Experiment: 3-Hydroxyhexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4889 and PP_4890 are separated by 56 nucleotides PP_4890 and PP_4891 are separated by 301 nucleotides
PP_4889: PP_4889 - Adenylosuccinate synthetase, at 5,557,960 to 5,559,252
_4889
PP_4890: PP_4890 - ATP phosphoribosyltransferase regulatory subunit, at 5,559,309 to 5,560,496
_4890
PP_4891: PP_4891 - integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex, at 5,560,798 to 5,561,667
_4891
Position (kb) 5559
5560
5561 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 5559.674 kb on - strand, within PP_4890 at 5559.674 kb on - strand, within PP_4890 at 5559.992 kb on - strand, within PP_4890 at 5560.103 kb on - strand, within PP_4890 at 5560.103 kb on - strand, within PP_4890 at 5560.103 kb on - strand, within PP_4890 at 5560.291 kb on - strand, within PP_4890 at 5560.349 kb on - strand, within PP_4890 at 5560.349 kb on - strand, within PP_4890 at 5560.450 kb on - strand at 5560.486 kb on - strand at 5560.498 kb on - strand at 5560.713 kb on - strand at 5560.713 kb on - strand at 5560.713 kb on - strand at 5560.713 kb on - strand at 5560.713 kb on - strand at 5560.752 kb on + strand at 5560.752 kb on + strand at 5560.886 kb on + strand, within PP_4891 at 5560.935 kb on - strand, within PP_4891 at 5560.935 kb on - strand, within PP_4891 at 5560.946 kb on + strand, within PP_4891 at 5560.946 kb on + strand, within PP_4891 at 5560.946 kb on + strand, within PP_4891 at 5560.946 kb on + strand, within PP_4891 at 5560.946 kb on + strand, within PP_4891 at 5560.947 kb on - strand, within PP_4891 at 5560.947 kb on - strand, within PP_4891 at 5560.947 kb on - strand, within PP_4891 at 5560.947 kb on - strand, within PP_4891 at 5560.950 kb on + strand, within PP_4891 at 5560.951 kb on - strand, within PP_4891 at 5560.951 kb on - strand, within PP_4891 at 5560.951 kb on - strand, within PP_4891 at 5561.000 kb on + strand, within PP_4891 at 5561.001 kb on - strand, within PP_4891 at 5561.278 kb on - strand, within PP_4891 at 5561.278 kb on - strand, within PP_4891 at 5561.366 kb on + strand, within PP_4891 at 5561.367 kb on - strand, within PP_4891 at 5561.367 kb on - strand, within PP_4891
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C) remove 5,559,674 - PP_4890 0.31 -3.5 5,559,674 - PP_4890 0.31 -3.1 5,559,992 - PP_4890 0.57 -2.4 5,560,103 - PP_4890 0.67 -4.8 5,560,103 - PP_4890 0.67 -3.6 5,560,103 - PP_4890 0.67 -3.9 5,560,291 - PP_4890 0.83 -0.8 5,560,349 - PP_4890 0.88 -2.2 5,560,349 - PP_4890 0.88 -3.2 5,560,450 - -2.9 5,560,486 - -0.1 5,560,498 - -0.4 5,560,713 - +0.2 5,560,713 - +0.1 5,560,713 - +0.5 5,560,713 - +0.1 5,560,713 - -0.2 5,560,752 + -0.5 5,560,752 + +0.2 5,560,886 + PP_4891 0.10 -0.5 5,560,935 - PP_4891 0.16 +0.5 5,560,935 - PP_4891 0.16 +0.7 5,560,946 + PP_4891 0.17 -0.9 5,560,946 + PP_4891 0.17 -0.3 5,560,946 + PP_4891 0.17 +1.2 5,560,946 + PP_4891 0.17 +0.2 5,560,946 + PP_4891 0.17 +0.9 5,560,947 - PP_4891 0.17 +0.9 5,560,947 - PP_4891 0.17 +1.1 5,560,947 - PP_4891 0.17 +0.2 5,560,947 - PP_4891 0.17 +1.5 5,560,950 + PP_4891 0.17 +0.5 5,560,951 - PP_4891 0.18 -1.7 5,560,951 - PP_4891 0.18 +1.3 5,560,951 - PP_4891 0.18 -0.5 5,561,000 + PP_4891 0.23 +0.6 5,561,001 - PP_4891 0.23 -0.1 5,561,278 - PP_4891 0.55 +1.4 5,561,278 - PP_4891 0.55 -1.3 5,561,366 + PP_4891 0.65 +0.2 5,561,367 - PP_4891 0.65 +0.9 5,561,367 - PP_4891 0.65 -1.9
Or see this region's nucleotide sequence