Strain Fitness in Pseudomonas putida KT2440 around PP_4782

Experiment: 3-Hydroxyhexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4781 and PP_4782 are separated by 265 nucleotidesPP_4782 and PP_4783 are separated by 13 nucleotidesPP_4783 and PP_4784 are separated by 16 nucleotides PP_4781: PP_4781 - Sensor histidine kinase, at 5,442,791 to 5,444,779 _4781 PP_4782: PP_4782 - Phosphomethylpyrimidine kinase, at 5,445,045 to 5,445,842 _4782 PP_4783: PP_4783 - Thiamine-phosphate synthase, at 5,445,856 to 5,446,479 _4783 PP_4784: PP_4784 - Glutamate-1-semialdehyde 2,1-aminomutase, at 5,446,496 to 5,447,779 _4784 Position (kb) 5445 5446Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5444.073 kb on + strand, within PP_4781at 5444.074 kb on - strand, within PP_4781at 5444.074 kb on - strand, within PP_4781at 5444.106 kb on + strand, within PP_4781at 5444.106 kb on + strand, within PP_4781at 5444.106 kb on + strand, within PP_4781at 5444.127 kb on + strand, within PP_4781at 5444.127 kb on + strand, within PP_4781at 5444.128 kb on - strand, within PP_4781at 5444.128 kb on - strand, within PP_4781at 5444.128 kb on - strand, within PP_4781at 5444.128 kb on - strand, within PP_4781at 5444.136 kb on + strand, within PP_4781at 5444.136 kb on + strand, within PP_4781at 5444.136 kb on + strand, within PP_4781at 5444.136 kb on + strand, within PP_4781at 5444.136 kb on + strand, within PP_4781at 5444.137 kb on - strand, within PP_4781at 5444.137 kb on - strand, within PP_4781at 5444.137 kb on - strand, within PP_4781at 5444.137 kb on - strand, within PP_4781at 5444.137 kb on - strand, within PP_4781at 5444.137 kb on - strand, within PP_4781at 5444.137 kb on - strand, within PP_4781at 5444.137 kb on - strand, within PP_4781at 5444.139 kb on + strandat 5444.139 kb on + strand, within PP_4781at 5444.139 kb on + strand, within PP_4781at 5444.140 kb on - strand, within PP_4781at 5444.140 kb on - strand, within PP_4781at 5444.140 kb on - strand, within PP_4781at 5444.140 kb on - strand, within PP_4781at 5444.145 kb on + strand, within PP_4781at 5444.145 kb on + strand, within PP_4781at 5444.169 kb on + strand, within PP_4781at 5444.169 kb on + strand, within PP_4781at 5444.170 kb on - strand, within PP_4781at 5444.170 kb on - strand, within PP_4781at 5444.170 kb on - strand, within PP_4781at 5444.185 kb on - strand, within PP_4781at 5444.185 kb on - strand, within PP_4781at 5444.202 kb on - strand, within PP_4781at 5444.211 kb on + strand, within PP_4781at 5444.212 kb on - strand, within PP_4781at 5444.229 kb on + strand, within PP_4781at 5444.229 kb on + strand, within PP_4781at 5444.230 kb on - strand, within PP_4781at 5444.230 kb on - strand, within PP_4781at 5444.320 kb on - strand, within PP_4781at 5444.320 kb on - strand, within PP_4781at 5444.364 kb on + strand, within PP_4781at 5444.364 kb on + strand, within PP_4781at 5444.364 kb on + strand, within PP_4781at 5444.364 kb on + strand, within PP_4781at 5444.365 kb on - strand, within PP_4781at 5444.365 kb on - strand, within PP_4781at 5444.365 kb on - strand, within PP_4781at 5444.431 kb on - strand, within PP_4781at 5444.454 kb on + strand, within PP_4781at 5444.455 kb on - strand, within PP_4781at 5444.671 kb on - strandat 5444.671 kb on - strandat 5444.772 kb on + strandat 5444.773 kb on - strandat 5444.773 kb on - strandat 5444.779 kb on + strandat 5444.779 kb on + strandat 5444.780 kb on - strandat 5444.780 kb on - strandat 5444.881 kb on + strandat 5444.882 kb on - strandat 5444.882 kb on - strandat 5444.882 kb on - strandat 5444.882 kb on - strandat 5444.969 kb on - strandat 5445.031 kb on + strandat 5445.032 kb on - strandat 5445.050 kb on + strandat 5445.050 kb on + strandat 5445.050 kb on + strandat 5445.051 kb on - strandat 5445.051 kb on - strandat 5445.051 kb on - strandat 5445.051 kb on - strandat 5445.054 kb on + strandat 5445.054 kb on + strandat 5445.055 kb on - strandat 5445.125 kb on + strand, within PP_4782at 5445.126 kb on - strand, within PP_4782at 5445.424 kb on - strand, within PP_4782at 5445.610 kb on - strand, within PP_4782at 5445.663 kb on + strand, within PP_4782at 5445.663 kb on + strand, within PP_4782at 5445.663 kb on + strand, within PP_4782at 5445.664 kb on - strand, within PP_4782at 5445.756 kb on + strand, within PP_4782at 5445.756 kb on + strand, within PP_4782at 5445.804 kb on + strandat 5445.804 kb on + strandat 5445.843 kb on + strandat 5445.874 kb on + strandat 5446.222 kb on + strand, within PP_4783at 5446.489 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C)
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5,444,073 + PP_4781 0.64 -0.2
5,444,074 - PP_4781 0.65 -0.9
5,444,074 - PP_4781 0.65 -0.7
5,444,106 + PP_4781 0.66 -0.9
5,444,106 + PP_4781 0.66 +0.4
5,444,106 + PP_4781 0.66 -0.3
5,444,127 + PP_4781 0.67 +0.0
5,444,127 + PP_4781 0.67 -0.0
5,444,128 - PP_4781 0.67 -1.3
5,444,128 - PP_4781 0.67 +0.7
5,444,128 - PP_4781 0.67 -0.1
5,444,128 - PP_4781 0.67 -0.3
5,444,136 + PP_4781 0.68 -0.2
5,444,136 + PP_4781 0.68 -0.1
5,444,136 + PP_4781 0.68 +1.6
5,444,136 + PP_4781 0.68 +1.1
5,444,136 + PP_4781 0.68 -0.7
5,444,137 - PP_4781 0.68 -0.8
5,444,137 - PP_4781 0.68 -0.6
5,444,137 - PP_4781 0.68 -0.2
5,444,137 - PP_4781 0.68 +2.1
5,444,137 - PP_4781 0.68 +0.6
5,444,137 - PP_4781 0.68 +0.4
5,444,137 - PP_4781 0.68 -0.4
5,444,137 - PP_4781 0.68 +0.1
5,444,139 + +0.5
5,444,139 + PP_4781 0.68 -0.8
5,444,139 + PP_4781 0.68 +0.6
5,444,140 - PP_4781 0.68 +0.2
5,444,140 - PP_4781 0.68 +1.2
5,444,140 - PP_4781 0.68 -0.8
5,444,140 - PP_4781 0.68 -0.3
5,444,145 + PP_4781 0.68 -0.4
5,444,145 + PP_4781 0.68 -0.0
5,444,169 + PP_4781 0.69 -1.1
5,444,169 + PP_4781 0.69 -0.6
5,444,170 - PP_4781 0.69 +2.1
5,444,170 - PP_4781 0.69 +0.8
5,444,170 - PP_4781 0.69 +0.1
5,444,185 - PP_4781 0.70 -0.2
5,444,185 - PP_4781 0.70 -0.2
5,444,202 - PP_4781 0.71 -0.1
5,444,211 + PP_4781 0.71 +0.9
5,444,212 - PP_4781 0.71 -0.1
5,444,229 + PP_4781 0.72 +0.1
5,444,229 + PP_4781 0.72 +0.2
5,444,230 - PP_4781 0.72 -0.5
5,444,230 - PP_4781 0.72 +0.5
5,444,320 - PP_4781 0.77 -1.1
5,444,320 - PP_4781 0.77 +0.2
5,444,364 + PP_4781 0.79 -0.0
5,444,364 + PP_4781 0.79 +0.1
5,444,364 + PP_4781 0.79 +0.5
5,444,364 + PP_4781 0.79 -0.2
5,444,365 - PP_4781 0.79 -0.4
5,444,365 - PP_4781 0.79 -0.3
5,444,365 - PP_4781 0.79 -0.5
5,444,431 - PP_4781 0.82 +0.1
5,444,454 + PP_4781 0.84 +0.5
5,444,455 - PP_4781 0.84 -0.8
5,444,671 - -0.5
5,444,671 - +0.6
5,444,772 + +0.1
5,444,773 - +0.9
5,444,773 - -0.1
5,444,779 + -1.3
5,444,779 + -0.2
5,444,780 - -0.2
5,444,780 - +0.5
5,444,881 + -0.2
5,444,882 - -0.5
5,444,882 - +0.2
5,444,882 - -1.5
5,444,882 - +0.0
5,444,969 - +0.6
5,445,031 + +0.5
5,445,032 - +1.5
5,445,050 + -0.1
5,445,050 + -1.6
5,445,050 + -1.0
5,445,051 - -1.5
5,445,051 - +0.2
5,445,051 - +2.5
5,445,051 - +0.2
5,445,054 + +1.1
5,445,054 + +2.5
5,445,055 - +0.5
5,445,125 + PP_4782 0.10 -1.2
5,445,126 - PP_4782 0.10 +0.9
5,445,424 - PP_4782 0.47 -1.2
5,445,610 - PP_4782 0.71 -0.9
5,445,663 + PP_4782 0.77 -3.3
5,445,663 + PP_4782 0.77 -0.0
5,445,663 + PP_4782 0.77 -1.3
5,445,664 - PP_4782 0.78 +0.9
5,445,756 + PP_4782 0.89 -1.4
5,445,756 + PP_4782 0.89 -3.5
5,445,804 + -2.9
5,445,804 + -2.2
5,445,843 + -0.1
5,445,874 + -1.3
5,446,222 + PP_4783 0.59 +0.2
5,446,489 + +1.2

Or see this region's nucleotide sequence