Strain Fitness in Pseudomonas putida KT2440 around PP_3999

Experiment: 3-Hydroxyhexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3998 and PP_3999 are separated by 106 nucleotidesPP_3999 and PP_4000 are separated by 0 nucleotides PP_3998: PP_3998 - glutathionyl-hydroquinone reductase, at 4,506,305 to 4,507,282 _3998 PP_3999: PP_3999 - Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase, at 4,507,389 to 4,508,780 _3999 PP_4000: PP_4000 - Serine--tRNA ligase, at 4,508,781 to 4,510,061 _4000 Position (kb) 4507 4508 4509Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4506.452 kb on + strand, within PP_3998at 4506.452 kb on + strand, within PP_3998at 4506.452 kb on + strand, within PP_3998at 4506.452 kb on + strand, within PP_3998at 4506.452 kb on + strand, within PP_3998at 4506.452 kb on + strand, within PP_3998at 4506.452 kb on + strand, within PP_3998at 4506.452 kb on + strand, within PP_3998at 4506.452 kb on + strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.453 kb on - strand, within PP_3998at 4506.620 kb on + strand, within PP_3998at 4506.620 kb on + strand, within PP_3998at 4506.621 kb on - strand, within PP_3998at 4506.635 kb on + strand, within PP_3998at 4506.635 kb on + strand, within PP_3998at 4506.636 kb on - strand, within PP_3998at 4506.636 kb on - strand, within PP_3998at 4506.636 kb on - strand, within PP_3998at 4506.656 kb on + strand, within PP_3998at 4506.657 kb on - strand, within PP_3998at 4506.657 kb on - strand, within PP_3998at 4506.681 kb on + strand, within PP_3998at 4506.682 kb on - strand, within PP_3998at 4506.682 kb on - strand, within PP_3998at 4506.682 kb on - strand, within PP_3998at 4506.741 kb on + strand, within PP_3998at 4506.775 kb on + strandat 4506.775 kb on + strand, within PP_3998at 4506.789 kb on - strand, within PP_3998at 4506.836 kb on + strand, within PP_3998at 4506.836 kb on + strand, within PP_3998at 4506.837 kb on - strand, within PP_3998at 4506.861 kb on - strand, within PP_3998at 4506.877 kb on + strand, within PP_3998at 4506.878 kb on - strand, within PP_3998at 4506.878 kb on - strand, within PP_3998at 4506.894 kb on - strand, within PP_3998at 4506.932 kb on + strand, within PP_3998at 4506.933 kb on - strand, within PP_3998at 4506.933 kb on - strand, within PP_3998at 4506.948 kb on + strand, within PP_3998at 4506.949 kb on - strand, within PP_3998at 4506.962 kb on + strand, within PP_3998at 4506.963 kb on - strand, within PP_3998at 4506.977 kb on + strand, within PP_3998at 4506.996 kb on + strand, within PP_3998at 4506.996 kb on + strand, within PP_3998at 4506.997 kb on - strand, within PP_3998at 4506.997 kb on - strand, within PP_3998at 4507.010 kb on - strand, within PP_3998at 4507.076 kb on + strand, within PP_3998at 4507.110 kb on - strand, within PP_3998at 4507.163 kb on + strand, within PP_3998at 4507.166 kb on + strand, within PP_3998at 4507.166 kb on + strand, within PP_3998at 4507.166 kb on + strand, within PP_3998at 4507.166 kb on + strand, within PP_3998at 4507.166 kb on + strand, within PP_3998at 4507.166 kb on + strand, within PP_3998at 4507.167 kb on - strand, within PP_3998at 4507.167 kb on - strand, within PP_3998at 4507.167 kb on - strand, within PP_3998at 4507.329 kb on + strandat 4507.330 kb on - strandat 4507.356 kb on + strandat 4507.356 kb on + strandat 4507.357 kb on - strandat 4507.357 kb on - strandat 4507.357 kb on - strandat 4507.571 kb on + strand, within PP_3999at 4507.636 kb on + strand, within PP_3999at 4507.636 kb on + strand, within PP_3999at 4507.636 kb on + strand, within PP_3999at 4507.636 kb on + strand, within PP_3999at 4507.637 kb on - strand, within PP_3999at 4507.637 kb on - strand, within PP_3999at 4507.735 kb on + strand, within PP_3999at 4507.736 kb on - strand, within PP_3999at 4507.766 kb on - strand, within PP_3999at 4507.977 kb on + strand, within PP_3999at 4507.977 kb on + strand, within PP_3999at 4507.977 kb on + strand, within PP_3999at 4507.978 kb on - strand, within PP_3999at 4507.981 kb on + strand, within PP_3999at 4507.981 kb on + strand, within PP_3999at 4507.981 kb on + strand, within PP_3999at 4507.981 kb on + strand, within PP_3999at 4507.981 kb on + strand, within PP_3999at 4507.982 kb on - strand, within PP_3999at 4507.982 kb on - strand, within PP_3999at 4507.982 kb on - strand, within PP_3999at 4508.009 kb on + strand, within PP_3999at 4508.009 kb on + strand, within PP_3999at 4508.009 kb on + strand, within PP_3999at 4508.009 kb on + strand, within PP_3999at 4508.009 kb on + strand, within PP_3999at 4508.010 kb on - strand, within PP_3999at 4508.010 kb on - strand, within PP_3999at 4508.010 kb on - strand, within PP_3999at 4508.010 kb on - strand, within PP_3999at 4508.042 kb on - strand, within PP_3999at 4508.125 kb on + strand, within PP_3999at 4508.126 kb on - strand, within PP_3999at 4508.276 kb on - strand, within PP_3999at 4508.329 kb on + strand, within PP_3999at 4508.413 kb on - strand, within PP_3999at 4508.453 kb on + strand, within PP_3999at 4508.454 kb on - strand, within PP_3999at 4508.454 kb on - strand, within PP_3999at 4508.454 kb on - strand, within PP_3999at 4508.587 kb on + strand, within PP_3999at 4508.774 kb on - strandat 4508.774 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C)
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4,506,452 + PP_3998 0.15 +0.8
4,506,452 + PP_3998 0.15 -0.2
4,506,452 + PP_3998 0.15 -0.3
4,506,452 + PP_3998 0.15 +0.7
4,506,452 + PP_3998 0.15 -0.6
4,506,452 + PP_3998 0.15 +0.0
4,506,452 + PP_3998 0.15 -1.1
4,506,452 + PP_3998 0.15 +0.1
4,506,452 + PP_3998 0.15 +0.4
4,506,453 - PP_3998 0.15 +1.0
4,506,453 - PP_3998 0.15 +0.5
4,506,453 - PP_3998 0.15 +0.2
4,506,453 - PP_3998 0.15 -1.5
4,506,453 - PP_3998 0.15 +1.3
4,506,453 - PP_3998 0.15 -0.5
4,506,453 - PP_3998 0.15 +0.0
4,506,453 - PP_3998 0.15 +0.3
4,506,453 - PP_3998 0.15 -0.7
4,506,453 - PP_3998 0.15 +0.1
4,506,620 + PP_3998 0.32 -0.3
4,506,620 + PP_3998 0.32 -0.0
4,506,621 - PP_3998 0.32 -0.3
4,506,635 + PP_3998 0.34 -0.1
4,506,635 + PP_3998 0.34 +0.1
4,506,636 - PP_3998 0.34 +0.5
4,506,636 - PP_3998 0.34 -0.3
4,506,636 - PP_3998 0.34 -0.4
4,506,656 + PP_3998 0.36 -0.0
4,506,657 - PP_3998 0.36 +0.3
4,506,657 - PP_3998 0.36 +0.1
4,506,681 + PP_3998 0.38 -0.1
4,506,682 - PP_3998 0.39 +0.8
4,506,682 - PP_3998 0.39 -0.2
4,506,682 - PP_3998 0.39 -0.1
4,506,741 + PP_3998 0.45 +0.8
4,506,775 + +0.3
4,506,775 + PP_3998 0.48 +0.8
4,506,789 - PP_3998 0.49 -1.1
4,506,836 + PP_3998 0.54 +0.2
4,506,836 + PP_3998 0.54 -0.2
4,506,837 - PP_3998 0.54 -0.1
4,506,861 - PP_3998 0.57 +0.5
4,506,877 + PP_3998 0.58 -0.1
4,506,878 - PP_3998 0.59 -0.7
4,506,878 - PP_3998 0.59 +1.2
4,506,894 - PP_3998 0.60 -0.3
4,506,932 + PP_3998 0.64 -0.5
4,506,933 - PP_3998 0.64 +0.2
4,506,933 - PP_3998 0.64 -0.8
4,506,948 + PP_3998 0.66 +0.6
4,506,949 - PP_3998 0.66 -0.4
4,506,962 + PP_3998 0.67 +0.5
4,506,963 - PP_3998 0.67 +0.4
4,506,977 + PP_3998 0.69 -0.8
4,506,996 + PP_3998 0.71 +0.1
4,506,996 + PP_3998 0.71 +0.8
4,506,997 - PP_3998 0.71 -0.7
4,506,997 - PP_3998 0.71 -0.1
4,507,010 - PP_3998 0.72 +0.0
4,507,076 + PP_3998 0.79 -0.9
4,507,110 - PP_3998 0.82 -0.4
4,507,163 + PP_3998 0.88 -0.3
4,507,166 + PP_3998 0.88 -0.4
4,507,166 + PP_3998 0.88 -0.8
4,507,166 + PP_3998 0.88 -0.3
4,507,166 + PP_3998 0.88 +0.3
4,507,166 + PP_3998 0.88 -0.1
4,507,166 + PP_3998 0.88 +0.3
4,507,167 - PP_3998 0.88 -1.0
4,507,167 - PP_3998 0.88 +0.3
4,507,167 - PP_3998 0.88 -0.1
4,507,329 + -0.7
4,507,330 - -0.1
4,507,356 + -0.6
4,507,356 + -0.8
4,507,357 - -0.5
4,507,357 - -0.0
4,507,357 - +0.2
4,507,571 + PP_3999 0.13 -0.5
4,507,636 + PP_3999 0.18 -0.8
4,507,636 + PP_3999 0.18 -0.2
4,507,636 + PP_3999 0.18 -1.5
4,507,636 + PP_3999 0.18 -0.7
4,507,637 - PP_3999 0.18 -1.4
4,507,637 - PP_3999 0.18 +0.8
4,507,735 + PP_3999 0.25 -1.7
4,507,736 - PP_3999 0.25 -3.8
4,507,766 - PP_3999 0.27 -0.8
4,507,977 + PP_3999 0.42 +0.0
4,507,977 + PP_3999 0.42 +0.0
4,507,977 + PP_3999 0.42 -1.5
4,507,978 - PP_3999 0.42 -1.2
4,507,981 + PP_3999 0.43 -1.0
4,507,981 + PP_3999 0.43 +1.3
4,507,981 + PP_3999 0.43 -3.8
4,507,981 + PP_3999 0.43 +2.3
4,507,981 + PP_3999 0.43 +0.0
4,507,982 - PP_3999 0.43 +0.3
4,507,982 - PP_3999 0.43 -2.9
4,507,982 - PP_3999 0.43 -0.7
4,508,009 + PP_3999 0.45 +2.3
4,508,009 + PP_3999 0.45 -0.7
4,508,009 + PP_3999 0.45 -0.7
4,508,009 + PP_3999 0.45 -2.2
4,508,009 + PP_3999 0.45 -2.0
4,508,010 - PP_3999 0.45 -0.2
4,508,010 - PP_3999 0.45 -1.2
4,508,010 - PP_3999 0.45 -2.1
4,508,010 - PP_3999 0.45 -1.0
4,508,042 - PP_3999 0.47 +0.3
4,508,125 + PP_3999 0.53 -0.7
4,508,126 - PP_3999 0.53 -2.2
4,508,276 - PP_3999 0.64 -1.6
4,508,329 + PP_3999 0.68 -0.5
4,508,413 - PP_3999 0.74 +0.0
4,508,453 + PP_3999 0.76 +1.3
4,508,454 - PP_3999 0.77 -2.0
4,508,454 - PP_3999 0.77 -4.5
4,508,454 - PP_3999 0.77 +0.3
4,508,587 + PP_3999 0.86 +0.0
4,508,774 - -0.2
4,508,774 - -0.7

Or see this region's nucleotide sequence