Experiment: 3-Hydroxyhexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3725 and PP_3726 are separated by 33 nucleotides PP_3726 and PP_3727 are separated by 239 nucleotides
PP_3725: PP_3725 - putative Acyl-CoA dehydrogenase, at 4,250,044 to 4,251,204
_3725
PP_3726: PP_3726 - Enoyl-CoA hydratase/isomerase family protein, at 4,251,238 to 4,252,032
_3726
PP_3727: PP_3727 - Amino-acid permease RocE, at 4,252,272 to 4,253,678
_3727
Position (kb) 4251
4252
4253 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4250.364 kb on - strand, within PP_3725 at 4250.567 kb on + strand, within PP_3725 at 4250.567 kb on + strand, within PP_3725 at 4250.567 kb on + strand, within PP_3725 at 4250.576 kb on + strand, within PP_3725 at 4250.577 kb on - strand at 4250.684 kb on + strand, within PP_3725 at 4250.684 kb on + strand, within PP_3725 at 4250.684 kb on + strand, within PP_3725 at 4250.685 kb on - strand, within PP_3725 at 4250.685 kb on - strand, within PP_3725 at 4250.685 kb on - strand, within PP_3725 at 4250.685 kb on - strand, within PP_3725 at 4250.685 kb on - strand at 4250.879 kb on + strand, within PP_3725 at 4250.879 kb on + strand, within PP_3725 at 4250.996 kb on + strand, within PP_3725 at 4250.996 kb on + strand, within PP_3725 at 4250.997 kb on - strand, within PP_3725 at 4251.041 kb on + strand, within PP_3725 at 4251.041 kb on + strand, within PP_3725 at 4251.041 kb on + strand, within PP_3725 at 4251.041 kb on + strand, within PP_3725 at 4251.042 kb on - strand, within PP_3725 at 4251.239 kb on + strand at 4251.379 kb on + strand, within PP_3726 at 4251.783 kb on - strand, within PP_3726 at 4252.119 kb on + strand at 4252.119 kb on + strand at 4252.120 kb on - strand at 4252.150 kb on - strand at 4252.150 kb on - strand at 4252.178 kb on - strand at 4252.178 kb on - strand at 4252.203 kb on + strand at 4252.330 kb on + strand at 4252.339 kb on + strand at 4252.340 kb on - strand at 4252.369 kb on + strand at 4252.456 kb on + strand, within PP_3727 at 4252.471 kb on + strand, within PP_3727 at 4252.471 kb on + strand, within PP_3727 at 4252.471 kb on + strand, within PP_3727 at 4252.742 kb on + strand, within PP_3727 at 4252.743 kb on - strand, within PP_3727 at 4252.756 kb on + strand, within PP_3727 at 4252.756 kb on + strand, within PP_3727 at 4252.756 kb on + strand, within PP_3727 at 4252.756 kb on + strand, within PP_3727 at 4252.756 kb on + strand, within PP_3727 at 4252.757 kb on - strand, within PP_3727 at 4252.757 kb on - strand, within PP_3727 at 4252.757 kb on - strand, within PP_3727 at 4252.924 kb on + strand, within PP_3727 at 4252.924 kb on + strand, within PP_3727 at 4252.924 kb on + strand, within PP_3727 at 4252.924 kb on + strand, within PP_3727 at 4252.924 kb on + strand, within PP_3727 at 4252.925 kb on - strand, within PP_3727 at 4252.925 kb on - strand, within PP_3727 at 4252.925 kb on - strand, within PP_3727
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C) remove 4,250,364 - PP_3725 0.28 -0.5 4,250,567 + PP_3725 0.45 -0.4 4,250,567 + PP_3725 0.45 -1.0 4,250,567 + PP_3725 0.45 +0.3 4,250,576 + PP_3725 0.46 -0.2 4,250,577 - +3.3 4,250,684 + PP_3725 0.55 -1.7 4,250,684 + PP_3725 0.55 -0.6 4,250,684 + PP_3725 0.55 -0.9 4,250,685 - PP_3725 0.55 -0.1 4,250,685 - PP_3725 0.55 +0.0 4,250,685 - PP_3725 0.55 +0.7 4,250,685 - PP_3725 0.55 +1.0 4,250,685 - +2.3 4,250,879 + PP_3725 0.72 +0.2 4,250,879 + PP_3725 0.72 +0.3 4,250,996 + PP_3725 0.82 -0.2 4,250,996 + PP_3725 0.82 -0.4 4,250,997 - PP_3725 0.82 +0.6 4,251,041 + PP_3725 0.86 -0.4 4,251,041 + PP_3725 0.86 -1.3 4,251,041 + PP_3725 0.86 -0.5 4,251,041 + PP_3725 0.86 +0.2 4,251,042 - PP_3725 0.86 +0.4 4,251,239 + +0.1 4,251,379 + PP_3726 0.18 -0.3 4,251,783 - PP_3726 0.69 -1.4 4,252,119 + -1.3 4,252,119 + -0.5 4,252,120 - -0.8 4,252,150 - -0.5 4,252,150 - +0.7 4,252,178 - +0.7 4,252,178 - -0.5 4,252,203 + -1.9 4,252,330 + +1.2 4,252,339 + -0.0 4,252,340 - -0.2 4,252,369 + -0.8 4,252,456 + PP_3727 0.13 +0.4 4,252,471 + PP_3727 0.14 +1.2 4,252,471 + PP_3727 0.14 +0.2 4,252,471 + PP_3727 0.14 +0.4 4,252,742 + PP_3727 0.33 -2.2 4,252,743 - PP_3727 0.33 +0.0 4,252,756 + PP_3727 0.34 -0.6 4,252,756 + PP_3727 0.34 +0.9 4,252,756 + PP_3727 0.34 -0.6 4,252,756 + PP_3727 0.34 -0.3 4,252,756 + PP_3727 0.34 +0.0 4,252,757 - PP_3727 0.34 +0.3 4,252,757 - PP_3727 0.34 -2.2 4,252,757 - PP_3727 0.34 +0.0 4,252,924 + PP_3727 0.46 -0.4 4,252,924 + PP_3727 0.46 -0.2 4,252,924 + PP_3727 0.46 +1.0 4,252,924 + PP_3727 0.46 +0.0 4,252,924 + PP_3727 0.46 -0.4 4,252,925 - PP_3727 0.46 -0.3 4,252,925 - PP_3727 0.46 -0.1 4,252,925 - PP_3727 0.46 -0.2
Or see this region's nucleotide sequence