Strain Fitness in Pseudomonas putida KT2440 around PP_2903

Experiment: 3-Hydroxyhexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2901 and PP_2902 are separated by 81 nucleotidesPP_2902 and PP_2903 overlap by 4 nucleotidesPP_2903 and PP_2904 are separated by 248 nucleotides PP_2901: PP_2901 - Acyl-homoserine lactone acylase, at 3,297,784 to 3,300,102 _2901 PP_2902: PP_2902 - UDP-2,3-diacylglucosamine hydrolase, at 3,300,184 to 3,300,906 _2902 PP_2903: PP_2903 - peptidyl-prolyl cis-trans isomerase B (rotamase B), at 3,300,903 to 3,301,403 _2903 PP_2904: PP_2904 - Glutamine--tRNA ligase, at 3,301,652 to 3,303,355 _2904 Position (kb) 3300 3301 3302Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3300.180 kb on - strandat 3301.292 kb on - strand, within PP_2903at 3301.292 kb on - strand, within PP_2903at 3301.292 kb on - strand, within PP_2903at 3301.596 kb on + strandat 3301.596 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C)
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3,300,180 - -1.1
3,301,292 - PP_2903 0.78 -4.0
3,301,292 - PP_2903 0.78 -2.1
3,301,292 - PP_2903 0.78 -2.2
3,301,596 + -0.2
3,301,596 + +0.1

Or see this region's nucleotide sequence