Strain Fitness in Pseudomonas putida KT2440 around PP_1778

Experiment: 3-Hydroxyhexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1777 and PP_1778 are separated by 2 nucleotidesPP_1778 and PP_1779 overlap by 4 nucleotides PP_1777: PP_1777 - phosphomannomutase, at 1,985,382 to 1,986,743 _1777 PP_1778: PP_1778 - Lipopolysaccharide ABC export system, permease protein, at 1,986,746 to 1,987,540 _1778 PP_1779: PP_1779 - Lipopolysaccharide ABC export system, ATP-binding protein, at 1,987,537 to 1,988,754 _1779 Position (kb) 1986 1987 1988Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1985.851 kb on - strand, within PP_1777at 1985.871 kb on + strand, within PP_1777at 1985.871 kb on + strand, within PP_1777at 1985.871 kb on + strand, within PP_1777at 1985.871 kb on + strand, within PP_1777at 1985.872 kb on - strand, within PP_1777at 1985.872 kb on - strand, within PP_1777at 1985.886 kb on - strand, within PP_1777at 1985.922 kb on - strand, within PP_1777at 1985.985 kb on - strand, within PP_1777at 1986.037 kb on + strand, within PP_1777at 1986.056 kb on + strand, within PP_1777at 1986.056 kb on + strand, within PP_1777at 1986.056 kb on + strand, within PP_1777at 1986.057 kb on - strand, within PP_1777at 1986.057 kb on - strand, within PP_1777at 1986.057 kb on - strand, within PP_1777at 1986.096 kb on - strand, within PP_1777at 1986.162 kb on + strand, within PP_1777at 1986.162 kb on + strand, within PP_1777at 1986.163 kb on - strand, within PP_1777at 1986.165 kb on + strand, within PP_1777at 1986.165 kb on + strand, within PP_1777at 1986.165 kb on + strand, within PP_1777at 1986.165 kb on + strand, within PP_1777at 1986.166 kb on - strand, within PP_1777at 1986.166 kb on - strand, within PP_1777at 1986.166 kb on - strand, within PP_1777at 1986.166 kb on - strand, within PP_1777at 1986.166 kb on - strand, within PP_1777at 1986.166 kb on - strand, within PP_1777at 1986.166 kb on - strand, within PP_1777at 1986.166 kb on - strand, within PP_1777at 1986.166 kb on - strand, within PP_1777at 1986.166 kb on - strand, within PP_1777at 1986.169 kb on + strand, within PP_1777at 1986.169 kb on + strand, within PP_1777at 1986.169 kb on + strand, within PP_1777at 1986.170 kb on - strand, within PP_1777at 1986.170 kb on - strand, within PP_1777at 1986.170 kb on - strand, within PP_1777at 1986.170 kb on - strand, within PP_1777at 1986.170 kb on - strand, within PP_1777at 1986.170 kb on - strand, within PP_1777at 1986.343 kb on + strand, within PP_1777at 1986.343 kb on + strand, within PP_1777at 1986.343 kb on + strand, within PP_1777at 1986.344 kb on - strand, within PP_1777at 1986.344 kb on - strand, within PP_1777at 1986.372 kb on + strand, within PP_1777at 1986.405 kb on - strand, within PP_1777at 1986.479 kb on + strand, within PP_1777at 1986.479 kb on + strand, within PP_1777at 1986.513 kb on + strand, within PP_1777at 1986.530 kb on + strand, within PP_1777at 1986.531 kb on - strand, within PP_1777at 1986.607 kb on + strandat 1986.608 kb on - strandat 1986.608 kb on - strandat 1986.608 kb on - strandat 1986.742 kb on - strandat 1986.766 kb on + strandat 1986.769 kb on - strandat 1986.791 kb on - strandat 1986.860 kb on - strand, within PP_1778at 1986.887 kb on + strand, within PP_1778at 1986.887 kb on + strandat 1986.887 kb on + strand, within PP_1778at 1986.887 kb on + strand, within PP_1778at 1986.887 kb on + strand, within PP_1778at 1986.888 kb on - strand, within PP_1778at 1986.888 kb on - strand, within PP_1778at 1986.909 kb on + strand, within PP_1778at 1986.910 kb on - strand, within PP_1778at 1986.940 kb on + strand, within PP_1778at 1986.940 kb on + strand, within PP_1778at 1986.944 kb on + strand, within PP_1778at 1986.950 kb on + strand, within PP_1778at 1986.960 kb on - strand, within PP_1778at 1987.046 kb on - strand, within PP_1778at 1987.180 kb on - strand, within PP_1778at 1987.236 kb on + strand, within PP_1778at 1987.237 kb on - strand, within PP_1778at 1987.281 kb on + strand, within PP_1778at 1987.282 kb on - strand, within PP_1778at 1987.413 kb on + strand, within PP_1778at 1987.414 kb on - strand, within PP_1778at 1987.533 kb on + strandat 1987.533 kb on + strandat 1987.534 kb on - strandat 1987.534 kb on - strandat 1987.534 kb on - strandat 1987.534 kb on - strandat 1987.534 kb on - strandat 1987.534 kb on - strandat 1987.534 kb on - strandat 1987.536 kb on + strandat 1987.536 kb on + strandat 1987.536 kb on + strandat 1987.536 kb on + strandat 1987.536 kb on + strandat 1987.537 kb on - strandat 1987.889 kb on + strand, within PP_1779at 1987.890 kb on - strand, within PP_1779at 1987.965 kb on + strand, within PP_1779at 1987.966 kb on - strand, within PP_1779at 1987.966 kb on - strand, within PP_1779at 1987.970 kb on - strand, within PP_1779at 1987.970 kb on - strand, within PP_1779at 1988.068 kb on + strand, within PP_1779at 1988.069 kb on - strand, within PP_1779at 1988.069 kb on - strand, within PP_1779at 1988.133 kb on - strand, within PP_1779at 1988.236 kb on + strand, within PP_1779at 1988.237 kb on - strand, within PP_1779at 1988.239 kb on + strand, within PP_1779at 1988.337 kb on + strand, within PP_1779at 1988.357 kb on - strand, within PP_1779at 1988.424 kb on - strand, within PP_1779at 1988.454 kb on - strand, within PP_1779at 1988.454 kb on - strand, within PP_1779at 1988.461 kb on + strand, within PP_1779at 1988.499 kb on + strand, within PP_1779

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C)
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1,985,851 - PP_1777 0.34 +1.0
1,985,871 + PP_1777 0.36 -0.7
1,985,871 + PP_1777 0.36 -0.1
1,985,871 + PP_1777 0.36 -0.8
1,985,871 + PP_1777 0.36 +0.2
1,985,872 - PP_1777 0.36 -0.9
1,985,872 - PP_1777 0.36 -0.8
1,985,886 - PP_1777 0.37 +1.9
1,985,922 - PP_1777 0.40 -1.0
1,985,985 - PP_1777 0.44 +1.1
1,986,037 + PP_1777 0.48 -0.8
1,986,056 + PP_1777 0.49 +3.6
1,986,056 + PP_1777 0.49 +0.5
1,986,056 + PP_1777 0.49 +0.5
1,986,057 - PP_1777 0.50 -0.0
1,986,057 - PP_1777 0.50 +1.3
1,986,057 - PP_1777 0.50 -0.0
1,986,096 - PP_1777 0.52 -0.0
1,986,162 + PP_1777 0.57 +0.1
1,986,162 + PP_1777 0.57 +0.1
1,986,163 - PP_1777 0.57 +0.9
1,986,165 + PP_1777 0.57 -0.1
1,986,165 + PP_1777 0.57 +0.4
1,986,165 + PP_1777 0.57 +0.0
1,986,165 + PP_1777 0.57 +0.7
1,986,166 - PP_1777 0.58 +0.3
1,986,166 - PP_1777 0.58 +0.1
1,986,166 - PP_1777 0.58 -0.4
1,986,166 - PP_1777 0.58 +0.7
1,986,166 - PP_1777 0.58 -0.7
1,986,166 - PP_1777 0.58 +1.1
1,986,166 - PP_1777 0.58 -0.9
1,986,166 - PP_1777 0.58 +0.1
1,986,166 - PP_1777 0.58 +0.7
1,986,166 - PP_1777 0.58 +0.2
1,986,169 + PP_1777 0.58 +0.3
1,986,169 + PP_1777 0.58 -0.3
1,986,169 + PP_1777 0.58 -0.3
1,986,170 - PP_1777 0.58 -1.3
1,986,170 - PP_1777 0.58 -0.0
1,986,170 - PP_1777 0.58 +2.3
1,986,170 - PP_1777 0.58 -0.0
1,986,170 - PP_1777 0.58 -1.5
1,986,170 - PP_1777 0.58 -0.9
1,986,343 + PP_1777 0.71 +1.5
1,986,343 + PP_1777 0.71 -0.4
1,986,343 + PP_1777 0.71 -1.4
1,986,344 - PP_1777 0.71 +0.1
1,986,344 - PP_1777 0.71 -1.2
1,986,372 + PP_1777 0.73 -1.4
1,986,405 - PP_1777 0.75 +1.7
1,986,479 + PP_1777 0.81 -0.7
1,986,479 + PP_1777 0.81 -0.1
1,986,513 + PP_1777 0.83 -1.2
1,986,530 + PP_1777 0.84 -0.7
1,986,531 - PP_1777 0.84 -0.9
1,986,607 + -0.6
1,986,608 - -0.2
1,986,608 - +1.6
1,986,608 - +0.6
1,986,742 - -1.9
1,986,766 + -2.1
1,986,769 - -0.7
1,986,791 - -0.5
1,986,860 - PP_1778 0.14 -2.6
1,986,887 + PP_1778 0.18 -2.3
1,986,887 + +2.3
1,986,887 + PP_1778 0.18 -0.5
1,986,887 + PP_1778 0.18 -1.0
1,986,887 + PP_1778 0.18 +0.3
1,986,888 - PP_1778 0.18 -0.5
1,986,888 - PP_1778 0.18 -0.0
1,986,909 + PP_1778 0.21 +2.3
1,986,910 - PP_1778 0.21 -2.5
1,986,940 + PP_1778 0.24 -1.9
1,986,940 + PP_1778 0.24 +0.7
1,986,944 + PP_1778 0.25 -0.0
1,986,950 + PP_1778 0.26 -1.0
1,986,960 - PP_1778 0.27 -0.5
1,987,046 - PP_1778 0.38 -1.9
1,987,180 - PP_1778 0.55 -2.6
1,987,236 + PP_1778 0.62 -1.9
1,987,237 - PP_1778 0.62 -0.1
1,987,281 + PP_1778 0.67 +0.7
1,987,282 - PP_1778 0.67 -2.4
1,987,413 + PP_1778 0.84 -3.3
1,987,414 - PP_1778 0.84 -1.9
1,987,533 + +2.3
1,987,533 + -0.0
1,987,534 - -0.0
1,987,534 - -0.0
1,987,534 - -0.9
1,987,534 - -1.7
1,987,534 - -2.9
1,987,534 - -1.2
1,987,534 - -4.2
1,987,536 + -2.2
1,987,536 + -2.1
1,987,536 + -2.8
1,987,536 + -1.3
1,987,536 + -1.3
1,987,537 - -1.2
1,987,889 + PP_1779 0.29 +1.3
1,987,890 - PP_1779 0.29 -1.4
1,987,965 + PP_1779 0.35 -2.5
1,987,966 - PP_1779 0.35 -2.2
1,987,966 - PP_1779 0.35 -0.9
1,987,970 - PP_1779 0.36 -2.9
1,987,970 - PP_1779 0.36 -0.5
1,988,068 + PP_1779 0.44 -1.2
1,988,069 - PP_1779 0.44 +2.3
1,988,069 - PP_1779 0.44 +0.6
1,988,133 - PP_1779 0.49 +1.3
1,988,236 + PP_1779 0.57 -0.9
1,988,237 - PP_1779 0.57 -1.9
1,988,239 + PP_1779 0.58 -1.9
1,988,337 + PP_1779 0.66 +1.3
1,988,357 - PP_1779 0.67 +0.3
1,988,424 - PP_1779 0.73 -1.5
1,988,454 - PP_1779 0.75 -0.5
1,988,454 - PP_1779 0.75 +1.3
1,988,461 + PP_1779 0.76 -0.7
1,988,499 + PP_1779 0.79 +0.3

Or see this region's nucleotide sequence