Strain Fitness in Pseudomonas putida KT2440 around PP_1217

Experiment: 3-Hydroxyhexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1215 and PP_1216 are separated by 109 nucleotidesPP_1216 and PP_1217 overlap by 4 nucleotidesPP_1217 and PP_1218 are separated by 125 nucleotidesPP_1218 and PP_1219 are separated by 2 nucleotides PP_1215: PP_1215 - Crossover junction endodeoxyribonuclease RuvC, at 1,393,016 to 1,393,540 _1215 PP_1216: PP_1216 - Holliday junction ATP-dependent DNA helicase RuvA, at 1,393,650 to 1,394,267 _1216 PP_1217: PP_1217 - Holliday junction ATP-dependent DNA helicase RuvB, at 1,394,264 to 1,395,310 _1217 PP_1218: PP_1218 - putative acyl-CoA thioesterase, at 1,395,436 to 1,395,888 _1218 PP_1219: PP_1219 - subunit of a proton-driven complex used for maintenance of outer membrane stability, at 1,395,891 to 1,396,586 _1219 Position (kb) 1394 1395 1396Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1393.538 kb on + strandat 1393.558 kb on - strandat 1393.577 kb on + strandat 1393.577 kb on + strandat 1393.577 kb on + strandat 1393.577 kb on + strandat 1393.578 kb on - strandat 1393.602 kb on + strandat 1393.602 kb on + strandat 1393.703 kb on + strandat 1393.704 kb on - strandat 1393.756 kb on - strand, within PP_1216at 1393.794 kb on - strand, within PP_1216at 1394.099 kb on - strand, within PP_1216at 1394.160 kb on + strand, within PP_1216at 1394.160 kb on + strand, within PP_1216at 1394.161 kb on - strand, within PP_1216at 1394.354 kb on + strandat 1394.354 kb on + strandat 1394.355 kb on - strandat 1394.355 kb on - strandat 1394.355 kb on - strandat 1394.705 kb on - strand, within PP_1217at 1394.744 kb on - strand, within PP_1217at 1394.747 kb on - strand, within PP_1217at 1394.814 kb on - strand, within PP_1217at 1394.891 kb on + strand, within PP_1217at 1394.961 kb on - strand, within PP_1217at 1395.148 kb on + strand, within PP_1217at 1395.148 kb on + strand, within PP_1217at 1395.149 kb on - strand, within PP_1217at 1395.149 kb on - strand, within PP_1217at 1395.149 kb on - strand, within PP_1217at 1395.149 kb on - strand, within PP_1217at 1395.149 kb on - strand, within PP_1217at 1395.173 kb on + strand, within PP_1217at 1395.191 kb on + strand, within PP_1217at 1395.191 kb on + strand, within PP_1217at 1395.191 kb on + strand, within PP_1217at 1395.192 kb on - strand, within PP_1217at 1395.192 kb on - strand, within PP_1217at 1395.192 kb on - strand, within PP_1217at 1395.192 kb on - strand, within PP_1217at 1395.236 kb on + strandat 1395.236 kb on + strandat 1395.237 kb on - strandat 1395.237 kb on - strandat 1395.237 kb on - strandat 1395.256 kb on + strandat 1395.256 kb on + strandat 1395.257 kb on - strandat 1395.257 kb on - strandat 1395.257 kb on - strandat 1395.377 kb on + strandat 1395.377 kb on + strandat 1395.423 kb on + strandat 1395.423 kb on + strandat 1395.430 kb on + strandat 1395.430 kb on + strandat 1395.495 kb on + strand, within PP_1218at 1395.517 kb on + strand, within PP_1218at 1395.517 kb on + strand, within PP_1218at 1395.520 kb on + strand, within PP_1218at 1395.520 kb on + strand, within PP_1218at 1395.725 kb on + strand, within PP_1218at 1395.821 kb on + strand, within PP_1218

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C)
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1,393,538 + +0.1
1,393,558 - +0.1
1,393,577 + +0.5
1,393,577 + +0.9
1,393,577 + +0.6
1,393,577 + +1.0
1,393,578 - +0.6
1,393,602 + -0.6
1,393,602 + +0.2
1,393,703 + +1.4
1,393,704 - -1.7
1,393,756 - PP_1216 0.17 +2.4
1,393,794 - PP_1216 0.23 +2.4
1,394,099 - PP_1216 0.73 +2.4
1,394,160 + PP_1216 0.83 +2.4
1,394,160 + PP_1216 0.83 +0.8
1,394,161 - PP_1216 0.83 -2.6
1,394,354 + +2.4
1,394,354 + +0.4
1,394,355 - -3.2
1,394,355 - +1.8
1,394,355 - +0.1
1,394,705 - PP_1217 0.42 -1.2
1,394,744 - PP_1217 0.46 +0.8
1,394,747 - PP_1217 0.46 +2.4
1,394,814 - PP_1217 0.53 -0.0
1,394,891 + PP_1217 0.60 +0.8
1,394,961 - PP_1217 0.67 +2.4
1,395,148 + PP_1217 0.84 +2.4
1,395,148 + PP_1217 0.84 +1.4
1,395,149 - PP_1217 0.85 +0.4
1,395,149 - PP_1217 0.85 +1.4
1,395,149 - PP_1217 0.85 +2.4
1,395,149 - PP_1217 0.85 +2.4
1,395,149 - PP_1217 0.85 +2.4
1,395,173 + PP_1217 0.87 +2.4
1,395,191 + PP_1217 0.89 +0.8
1,395,191 + PP_1217 0.89 +1.4
1,395,191 + PP_1217 0.89 +0.8
1,395,192 - PP_1217 0.89 +2.4
1,395,192 - PP_1217 0.89 -1.0
1,395,192 - PP_1217 0.89 +2.4
1,395,192 - PP_1217 0.89 +0.4
1,395,236 + +2.4
1,395,236 + +2.4
1,395,237 - +1.4
1,395,237 - +2.4
1,395,237 - +2.4
1,395,256 + -1.3
1,395,256 + +0.8
1,395,257 - +0.2
1,395,257 - -2.1
1,395,257 - -2.6
1,395,377 + +1.2
1,395,377 + -0.5
1,395,423 + +1.2
1,395,423 + +1.0
1,395,430 + -2.0
1,395,430 + -0.5
1,395,495 + PP_1218 0.13 -1.1
1,395,517 + PP_1218 0.18 -0.2
1,395,517 + PP_1218 0.18 +1.2
1,395,520 + PP_1218 0.19 +0.3
1,395,520 + PP_1218 0.19 -0.1
1,395,725 + PP_1218 0.64 +0.1
1,395,821 + PP_1218 0.85 +0.4

Or see this region's nucleotide sequence