Experiment: 3-Hydroxyhexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0854 and PP_0855 are separated by 39 nucleotides PP_0855 and PP_0856 are separated by 0 nucleotides PP_0856 and PP_0857 are separated by 116 nucleotides
PP_0854: PP_0854 - Histidine--tRNA ligase, at 988,149 to 989,438
_0854
PP_0855: PP_0855 - conserved protein of unknown function, at 989,478 to 990,119
_0855
PP_0856: PP_0856 - conserved lipoprotein of unknown function, at 990,120 to 991,262
_0856
PP_0857: PP_0857 - GTPase Der, at 991,379 to 992,842
_0857
Position (kb) 990
991
992 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 989.436 kb on + strand at 989.471 kb on + strand at 989.471 kb on + strand at 989.472 kb on - strand at 989.604 kb on + strand, within PP_0855 at 989.605 kb on - strand, within PP_0855 at 989.745 kb on + strand, within PP_0855 at 989.746 kb on - strand, within PP_0855 at 989.755 kb on - strand, within PP_0855 at 989.890 kb on + strand, within PP_0855 at 990.104 kb on + strand at 990.117 kb on + strand at 990.117 kb on + strand at 990.118 kb on - strand at 990.118 kb on - strand at 990.160 kb on + strand at 990.161 kb on - strand at 990.288 kb on + strand, within PP_0856 at 990.288 kb on + strand, within PP_0856 at 990.288 kb on + strand, within PP_0856 at 990.289 kb on - strand, within PP_0856 at 990.289 kb on - strand, within PP_0856 at 990.323 kb on + strand, within PP_0856 at 990.323 kb on + strand, within PP_0856 at 990.327 kb on + strand, within PP_0856 at 990.327 kb on + strand, within PP_0856 at 990.328 kb on - strand, within PP_0856 at 990.431 kb on - strand, within PP_0856 at 990.435 kb on + strand, within PP_0856 at 990.728 kb on - strand, within PP_0856 at 990.855 kb on + strand, within PP_0856 at 990.855 kb on + strand, within PP_0856 at 990.936 kb on + strand, within PP_0856 at 990.969 kb on + strand, within PP_0856 at 991.086 kb on + strand, within PP_0856 at 991.150 kb on + strand at 991.266 kb on + strand at 991.266 kb on + strand at 991.266 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C) remove 989,436 + +0.6 989,471 + +0.2 989,471 + -1.0 989,472 - +2.5 989,604 + PP_0855 0.20 -0.4 989,605 - PP_0855 0.20 +3.5 989,745 + PP_0855 0.42 -1.7 989,746 - PP_0855 0.42 +1.5 989,755 - PP_0855 0.43 -0.7 989,890 + PP_0855 0.64 -0.5 990,104 + -1.7 990,117 + +0.5 990,117 + -0.2 990,118 - +0.9 990,118 - -0.7 990,160 + -0.2 990,161 - +1.5 990,288 + PP_0856 0.15 +0.9 990,288 + PP_0856 0.15 +0.9 990,288 + PP_0856 0.15 -0.9 990,289 - PP_0856 0.15 +2.5 990,289 - PP_0856 0.15 +1.5 990,323 + PP_0856 0.18 +0.9 990,323 + PP_0856 0.18 -0.1 990,327 + PP_0856 0.18 +2.5 990,327 + PP_0856 0.18 -0.7 990,328 - PP_0856 0.18 -0.5 990,431 - PP_0856 0.27 +0.5 990,435 + PP_0856 0.28 +1.5 990,728 - PP_0856 0.53 +0.5 990,855 + PP_0856 0.64 +0.5 990,855 + PP_0856 0.64 +0.3 990,936 + PP_0856 0.71 -0.1 990,969 + PP_0856 0.74 -2.4 991,086 + PP_0856 0.85 -1.5 991,150 + -1.5 991,266 + -0.3 991,266 + -0.4 991,266 + +1.0
Or see this region's nucleotide sequence