Experiment: 3-Hydroxyhexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0718 and PP_0719 are separated by 176 nucleotides PP_0719 and PP_0720 are separated by 24 nucleotides PP_0720 and PP_0721 are separated by 79 nucleotides
PP_0718: PP_0718 - Sulfate transporter, at 834,366 to 836,078
_0718
PP_0719: PP_0719 - ribosome-associated potassium-dependent informational ATP/GTPase, at 836,255 to 837,355
_0719
PP_0720: PP_0720 - Peptidyl-tRNA hydrolase, at 837,380 to 837,964
_0720
PP_0721: PP_0721 - 50S ribosomal protein L25, at 838,044 to 838,697
_0721
Position (kb) 836
837
838 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 835.296 kb on + strand, within PP_0718 at 835.297 kb on - strand, within PP_0718 at 835.297 kb on - strand, within PP_0718 at 835.372 kb on - strand, within PP_0718 at 835.534 kb on + strand, within PP_0718 at 835.535 kb on - strand, within PP_0718 at 835.535 kb on - strand, within PP_0718 at 835.536 kb on + strand, within PP_0718 at 835.536 kb on + strand, within PP_0718 at 835.552 kb on + strand, within PP_0718 at 835.552 kb on + strand, within PP_0718 at 835.553 kb on - strand, within PP_0718 at 835.623 kb on + strand, within PP_0718 at 835.623 kb on + strand, within PP_0718 at 835.623 kb on + strand, within PP_0718 at 835.623 kb on + strand, within PP_0718 at 835.624 kb on - strand, within PP_0718 at 835.624 kb on - strand, within PP_0718 at 835.648 kb on + strand, within PP_0718 at 835.648 kb on + strand, within PP_0718 at 835.648 kb on + strand, within PP_0718 at 835.649 kb on - strand, within PP_0718 at 835.649 kb on - strand, within PP_0718 at 835.787 kb on - strand, within PP_0718 at 835.787 kb on - strand, within PP_0718 at 835.787 kb on - strand, within PP_0718 at 835.870 kb on + strand, within PP_0718 at 835.870 kb on + strand, within PP_0718 at 835.893 kb on - strand, within PP_0718 at 835.893 kb on - strand, within PP_0718 at 835.897 kb on + strand, within PP_0718 at 835.897 kb on + strand, within PP_0718 at 835.898 kb on - strand, within PP_0718 at 835.906 kb on + strand, within PP_0718 at 835.906 kb on + strand, within PP_0718 at 835.906 kb on + strand, within PP_0718 at 835.906 kb on + strand, within PP_0718 at 835.907 kb on - strand at 835.907 kb on - strand at 835.907 kb on - strand at 835.907 kb on - strand at 835.907 kb on - strand at 835.907 kb on - strand at 835.907 kb on - strand at 835.907 kb on - strand at 835.907 kb on - strand at 835.907 kb on - strand at 835.907 kb on - strand at 835.910 kb on + strand at 835.911 kb on - strand at 835.936 kb on + strand at 835.937 kb on - strand at 836.015 kb on - strand at 836.015 kb on - strand at 836.015 kb on - strand at 836.015 kb on - strand at 836.015 kb on - strand at 836.015 kb on - strand at 836.118 kb on + strand at 836.118 kb on + strand at 836.118 kb on + strand at 836.118 kb on + strand at 836.119 kb on - strand at 836.119 kb on - strand at 836.119 kb on - strand at 836.119 kb on - strand at 836.119 kb on - strand at 836.264 kb on - strand at 836.301 kb on + strand at 836.302 kb on - strand at 836.478 kb on - strand, within PP_0719 at 836.502 kb on + strand, within PP_0719 at 836.502 kb on + strand, within PP_0719 at 836.739 kb on + strand, within PP_0719 at 836.740 kb on - strand, within PP_0719 at 836.916 kb on - strand, within PP_0719 at 837.360 kb on - strand at 837.996 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C) remove 835,296 + PP_0718 0.54 +1.0 835,297 - PP_0718 0.54 +0.6 835,297 - PP_0718 0.54 -0.7 835,372 - PP_0718 0.59 +1.0 835,534 + PP_0718 0.68 +0.4 835,535 - PP_0718 0.68 +0.6 835,535 - PP_0718 0.68 +0.2 835,536 + PP_0718 0.68 +0.9 835,536 + PP_0718 0.68 -0.3 835,552 + PP_0718 0.69 +0.3 835,552 + PP_0718 0.69 -0.0 835,553 - PP_0718 0.69 +0.4 835,623 + PP_0718 0.73 +1.8 835,623 + PP_0718 0.73 -1.0 835,623 + PP_0718 0.73 -0.6 835,623 + PP_0718 0.73 -0.4 835,624 - PP_0718 0.73 -0.2 835,624 - PP_0718 0.73 +0.2 835,648 + PP_0718 0.75 -0.5 835,648 + PP_0718 0.75 +0.4 835,648 + PP_0718 0.75 -0.0 835,649 - PP_0718 0.75 -0.4 835,649 - PP_0718 0.75 -0.8 835,787 - PP_0718 0.83 +0.2 835,787 - PP_0718 0.83 -0.1 835,787 - PP_0718 0.83 -0.7 835,870 + PP_0718 0.88 +1.0 835,870 + PP_0718 0.88 -0.5 835,893 - PP_0718 0.89 +0.1 835,893 - PP_0718 0.89 +0.1 835,897 + PP_0718 0.89 +0.9 835,897 + PP_0718 0.89 +0.9 835,898 - PP_0718 0.89 -0.5 835,906 + PP_0718 0.90 +0.7 835,906 + PP_0718 0.90 -0.2 835,906 + PP_0718 0.90 -0.2 835,906 + PP_0718 0.90 +1.6 835,907 - -0.8 835,907 - +0.4 835,907 - -0.0 835,907 - +0.6 835,907 - -0.8 835,907 - +0.1 835,907 - -1.0 835,907 - -0.2 835,907 - +0.1 835,907 - -0.4 835,907 - +4.3 835,910 + -0.2 835,911 - +0.3 835,936 + -0.5 835,937 - -0.0 836,015 - +0.0 836,015 - -0.1 836,015 - +1.1 836,015 - -0.4 836,015 - +0.5 836,015 - -1.1 836,118 + +0.9 836,118 + -1.2 836,118 + -0.6 836,118 + -0.5 836,119 - +0.7 836,119 - -0.4 836,119 - +0.4 836,119 - +0.6 836,119 - +0.9 836,264 - -0.3 836,301 + +2.4 836,302 - +0.9 836,478 - PP_0719 0.20 -0.1 836,502 + PP_0719 0.22 +2.4 836,502 + PP_0719 0.22 +2.4 836,739 + PP_0719 0.44 +0.4 836,740 - PP_0719 0.44 +0.9 836,916 - PP_0719 0.60 +0.9 837,360 - -0.4 837,996 - +0.1
Or see this region's nucleotide sequence