Experiment: 3-Hydroxyhexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0434 and PP_0435 are separated by 3 nucleotides PP_0435 and PP_0436 are separated by 207 nucleotides
PP_0434: PP_0434 - Anhydro-N-acetylmuramic acid kinase, at 520,204 to 521,295
_0434
PP_0435: PP_0435 - Peptidase, M23/M37 family, at 521,299 to 522,726
_0435
PP_0436: PP_0436 - Tyrosine--tRNA ligase, at 522,934 to 524,133
_0436
Position (kb) 521
522
523 Strain fitness (log2 ratio) -2
-1
0
1
2 at 520.337 kb on - strand, within PP_0434 at 520.343 kb on + strand, within PP_0434 at 520.375 kb on + strand, within PP_0434 at 520.375 kb on + strand, within PP_0434 at 520.376 kb on - strand, within PP_0434 at 520.692 kb on - strand, within PP_0434 at 520.692 kb on - strand, within PP_0434 at 520.692 kb on - strand, within PP_0434 at 520.807 kb on + strand, within PP_0434 at 520.807 kb on + strand, within PP_0434 at 520.808 kb on - strand, within PP_0434 at 520.813 kb on - strand, within PP_0434 at 520.978 kb on - strand, within PP_0434 at 521.076 kb on + strand, within PP_0434 at 521.077 kb on - strand, within PP_0434 at 521.195 kb on + strand at 521.196 kb on - strand at 521.285 kb on + strand at 521.285 kb on + strand at 521.285 kb on + strand at 521.286 kb on - strand at 521.301 kb on - strand at 521.466 kb on - strand, within PP_0435 at 521.507 kb on + strand, within PP_0435 at 521.507 kb on + strand, within PP_0435 at 521.508 kb on - strand, within PP_0435 at 521.580 kb on - strand, within PP_0435 at 521.591 kb on + strand, within PP_0435 at 521.592 kb on - strand, within PP_0435 at 521.837 kb on + strand, within PP_0435 at 521.837 kb on + strand, within PP_0435 at 521.837 kb on + strand, within PP_0435 at 521.838 kb on - strand, within PP_0435 at 521.838 kb on - strand, within PP_0435 at 521.840 kb on + strand, within PP_0435 at 521.840 kb on + strand, within PP_0435 at 521.840 kb on + strand, within PP_0435 at 521.840 kb on + strand, within PP_0435 at 521.840 kb on + strand, within PP_0435 at 521.841 kb on - strand, within PP_0435 at 521.841 kb on - strand, within PP_0435 at 521.841 kb on - strand at 521.841 kb on - strand, within PP_0435 at 521.841 kb on - strand, within PP_0435 at 521.841 kb on - strand, within PP_0435 at 521.841 kb on - strand at 521.844 kb on + strand, within PP_0435 at 521.844 kb on + strand, within PP_0435 at 521.844 kb on + strand, within PP_0435 at 521.844 kb on + strand, within PP_0435 at 521.844 kb on + strand, within PP_0435 at 521.844 kb on + strand, within PP_0435 at 521.845 kb on - strand, within PP_0435 at 521.845 kb on - strand, within PP_0435 at 521.845 kb on - strand, within PP_0435 at 521.845 kb on - strand, within PP_0435 at 521.845 kb on - strand, within PP_0435 at 521.882 kb on + strand, within PP_0435 at 521.883 kb on - strand, within PP_0435 at 521.883 kb on - strand, within PP_0435 at 521.963 kb on + strand, within PP_0435 at 521.964 kb on - strand, within PP_0435 at 522.017 kb on + strand, within PP_0435 at 522.113 kb on + strand, within PP_0435 at 522.113 kb on + strand, within PP_0435 at 522.125 kb on - strand, within PP_0435 at 522.159 kb on - strand, within PP_0435 at 522.367 kb on - strand, within PP_0435 at 522.622 kb on + strand at 522.623 kb on - strand at 522.686 kb on + strand at 522.687 kb on - strand at 522.789 kb on + strand at 522.873 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C) remove 520,337 - PP_0434 0.12 -0.5 520,343 + PP_0434 0.13 -0.4 520,375 + PP_0434 0.16 -0.8 520,375 + PP_0434 0.16 -0.5 520,376 - PP_0434 0.16 -0.5 520,692 - PP_0434 0.45 -0.4 520,692 - PP_0434 0.45 -1.0 520,692 - PP_0434 0.45 -1.1 520,807 + PP_0434 0.55 +0.1 520,807 + PP_0434 0.55 +1.5 520,808 - PP_0434 0.55 -0.9 520,813 - PP_0434 0.56 -0.8 520,978 - PP_0434 0.71 -0.6 521,076 + PP_0434 0.80 -0.7 521,077 - PP_0434 0.80 -0.8 521,195 + -0.5 521,196 - -1.5 521,285 + -0.5 521,285 + -1.7 521,285 + -0.1 521,286 - -1.1 521,301 - -0.6 521,466 - PP_0435 0.12 -0.8 521,507 + PP_0435 0.15 -2.3 521,507 + PP_0435 0.15 -1.4 521,508 - PP_0435 0.15 +2.5 521,580 - PP_0435 0.20 -0.9 521,591 + PP_0435 0.20 -0.7 521,592 - PP_0435 0.21 +0.9 521,837 + PP_0435 0.38 -1.6 521,837 + PP_0435 0.38 -1.4 521,837 + PP_0435 0.38 -1.7 521,838 - PP_0435 0.38 -1.2 521,838 - PP_0435 0.38 +0.5 521,840 + PP_0435 0.38 +0.2 521,840 + PP_0435 0.38 -1.2 521,840 + PP_0435 0.38 -1.3 521,840 + PP_0435 0.38 +0.1 521,840 + PP_0435 0.38 -0.1 521,841 - PP_0435 0.38 -1.4 521,841 - PP_0435 0.38 -0.6 521,841 - +1.2 521,841 - PP_0435 0.38 -1.0 521,841 - PP_0435 0.38 -1.0 521,841 - PP_0435 0.38 -1.1 521,841 - +0.9 521,844 + PP_0435 0.38 -1.4 521,844 + PP_0435 0.38 -1.8 521,844 + PP_0435 0.38 -1.4 521,844 + PP_0435 0.38 -1.2 521,844 + PP_0435 0.38 -0.7 521,844 + PP_0435 0.38 -0.6 521,845 - PP_0435 0.38 +0.3 521,845 - PP_0435 0.38 -0.6 521,845 - PP_0435 0.38 -0.3 521,845 - PP_0435 0.38 -1.0 521,845 - PP_0435 0.38 +2.1 521,882 + PP_0435 0.41 -1.3 521,883 - PP_0435 0.41 -0.5 521,883 - PP_0435 0.41 -1.7 521,963 + PP_0435 0.46 -0.9 521,964 - PP_0435 0.47 -1.9 522,017 + PP_0435 0.50 -1.2 522,113 + PP_0435 0.57 -0.9 522,113 + PP_0435 0.57 -0.9 522,125 - PP_0435 0.58 -0.0 522,159 - PP_0435 0.60 -1.4 522,367 - PP_0435 0.75 -1.0 522,622 + -1.6 522,623 - -1.1 522,686 + -1.5 522,687 - -0.7 522,789 + -1.1 522,873 + +0.2
Or see this region's nucleotide sequence