Experiment: 3-Hydroxyhexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0391 and PP_0392 are separated by 74 nucleotides PP_0392 and PP_0393 overlap by 10 nucleotides PP_0393 and PP_0394 are separated by 109 nucleotides
PP_0391: PP_0391 - Glycerol-3-phosphate acyltransferase, at 476,752 to 477,321
_0391
PP_0392: PP_0392 - dihydroneopterin aldolase, at 477,396 to 477,752
_0392
PP_0393: PP_0393 - putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, at 477,743 to 478,252
_0393
PP_0394: PP_0394 - tRNA nucleotidyltransferase - 2',3'-cyclic phosphodiesterase - 2' nucleotidase and phosphatase, at 478,362 to 479,468
_0394
Position (kb) 477
478
479 Strain fitness (log2 ratio) -2
-1
0
1
2 at 476.827 kb on + strand, within PP_0391 at 476.927 kb on + strand, within PP_0391 at 476.927 kb on + strand, within PP_0391 at 476.928 kb on - strand, within PP_0391 at 476.975 kb on + strand, within PP_0391 at 476.976 kb on - strand, within PP_0391 at 477.035 kb on + strand, within PP_0391 at 477.067 kb on + strand, within PP_0391 at 477.068 kb on - strand, within PP_0391 at 477.068 kb on - strand, within PP_0391 at 477.121 kb on + strand, within PP_0391 at 477.121 kb on + strand, within PP_0391 at 477.122 kb on - strand, within PP_0391 at 477.122 kb on - strand, within PP_0391 at 477.152 kb on - strand, within PP_0391 at 477.175 kb on - strand, within PP_0391 at 477.190 kb on + strand, within PP_0391 at 477.191 kb on - strand, within PP_0391 at 477.191 kb on - strand, within PP_0391 at 477.191 kb on - strand, within PP_0391 at 477.761 kb on + strand at 477.762 kb on - strand at 477.987 kb on - strand, within PP_0393 at 478.034 kb on + strand, within PP_0393 at 478.034 kb on + strand, within PP_0393 at 478.034 kb on + strand, within PP_0393 at 478.035 kb on - strand, within PP_0393 at 478.035 kb on - strand, within PP_0393 at 478.035 kb on - strand, within PP_0393 at 478.052 kb on - strand, within PP_0393 at 478.069 kb on - strand, within PP_0393 at 478.069 kb on - strand, within PP_0393 at 478.201 kb on - strand, within PP_0393 at 478.327 kb on + strand at 478.327 kb on + strand at 478.328 kb on - strand at 478.328 kb on - strand at 478.357 kb on + strand at 478.363 kb on + strand at 478.376 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C) remove 476,827 + PP_0391 0.13 -0.1 476,927 + PP_0391 0.31 -0.7 476,927 + PP_0391 0.31 +0.0 476,928 - PP_0391 0.31 -0.5 476,975 + PP_0391 0.39 -1.1 476,976 - PP_0391 0.39 +0.0 477,035 + PP_0391 0.50 -0.1 477,067 + PP_0391 0.55 +1.6 477,068 - PP_0391 0.55 -1.7 477,068 - PP_0391 0.55 -0.3 477,121 + PP_0391 0.65 +0.0 477,121 + PP_0391 0.65 +0.1 477,122 - PP_0391 0.65 -0.5 477,122 - PP_0391 0.65 -0.1 477,152 - PP_0391 0.70 -0.2 477,175 - PP_0391 0.74 +0.2 477,190 + PP_0391 0.77 -0.7 477,191 - PP_0391 0.77 +0.2 477,191 - PP_0391 0.77 +0.9 477,191 - PP_0391 0.77 -0.6 477,761 + +1.7 477,762 - +2.5 477,987 - PP_0393 0.48 +1.5 478,034 + PP_0393 0.57 +2.5 478,034 + PP_0393 0.57 +2.5 478,034 + PP_0393 0.57 +2.5 478,035 - PP_0393 0.57 +0.2 478,035 - PP_0393 0.57 +0.9 478,035 - PP_0393 0.57 +2.5 478,052 - PP_0393 0.61 +0.2 478,069 - PP_0393 0.64 +2.5 478,069 - PP_0393 0.64 -2.5 478,201 - PP_0393 0.90 +2.5 478,327 + +0.5 478,327 + -0.7 478,328 - +0.5 478,328 - +1.1 478,357 + -0.2 478,363 + -0.4 478,376 - -0.6
Or see this region's nucleotide sequence