Experiment: 3-Hydroxyhexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0377 and PP_0378 overlap by 4 nucleotides PP_0378 and PP_0379 are separated by 163 nucleotides PP_0379 and PP_0380 are separated by 78 nucleotides PP_0380 and PP_0381 are separated by 159 nucleotides
PP_0377: PP_0377 - coenzyme PQQ synthesis protein D, at 457,752 to 458,027
_0377
PP_0378: PP_0378 - Pyrroloquinoline-quinone synthase, at 458,024 to 458,779
_0378
PP_0379: PP_0379 - Coenzyme PQQ synthesis protein B, at 458,943 to 459,854
_0379
PP_0380: PP_0380 - Coenzyme PQQ synthesis protein A, at 459,933 to 460,004
_0380
PP_0381: PP_0381 - Coenzyme PQQ synthesis protein F, at 460,164 to 462,464
_0381
Position (kb) 458
459
460 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 457.973 kb on - strand, within PP_0377 at 458.005 kb on - strand at 458.012 kb on + strand at 458.027 kb on + strand at 458.027 kb on + strand at 458.028 kb on - strand at 458.119 kb on + strand, within PP_0378 at 458.120 kb on - strand, within PP_0378 at 458.161 kb on + strand, within PP_0378 at 458.161 kb on + strand, within PP_0378 at 458.161 kb on + strand, within PP_0378 at 458.162 kb on - strand, within PP_0378 at 458.187 kb on + strand, within PP_0378 at 458.188 kb on - strand, within PP_0378 at 458.188 kb on - strand, within PP_0378 at 458.256 kb on + strand, within PP_0378 at 458.256 kb on + strand, within PP_0378 at 458.257 kb on - strand, within PP_0378 at 458.430 kb on - strand, within PP_0378 at 458.430 kb on - strand, within PP_0378 at 458.430 kb on - strand, within PP_0378 at 458.622 kb on + strand, within PP_0378 at 458.622 kb on + strand, within PP_0378 at 458.623 kb on - strand, within PP_0378 at 458.625 kb on + strand, within PP_0378 at 458.625 kb on + strand, within PP_0378 at 458.626 kb on - strand, within PP_0378 at 458.694 kb on + strand, within PP_0378 at 458.694 kb on + strand, within PP_0378 at 458.695 kb on - strand, within PP_0378 at 458.712 kb on + strand at 458.712 kb on + strand at 458.712 kb on + strand at 458.713 kb on - strand at 458.713 kb on - strand at 458.713 kb on - strand at 458.715 kb on + strand at 458.716 kb on - strand at 458.795 kb on - strand at 458.804 kb on - strand at 458.804 kb on - strand at 458.940 kb on + strand at 458.944 kb on + strand at 458.944 kb on + strand at 458.945 kb on - strand at 459.053 kb on + strand, within PP_0379 at 459.054 kb on - strand, within PP_0379 at 459.054 kb on - strand, within PP_0379 at 459.054 kb on - strand, within PP_0379 at 459.054 kb on - strand, within PP_0379 at 459.057 kb on + strand, within PP_0379 at 459.057 kb on + strand, within PP_0379 at 459.057 kb on + strand, within PP_0379 at 459.058 kb on - strand, within PP_0379 at 459.246 kb on + strand, within PP_0379 at 459.246 kb on + strand, within PP_0379 at 459.246 kb on + strand, within PP_0379 at 459.268 kb on + strand, within PP_0379 at 459.268 kb on + strand, within PP_0379 at 459.352 kb on + strand, within PP_0379 at 459.352 kb on + strand, within PP_0379 at 459.700 kb on - strand, within PP_0379 at 459.700 kb on - strand, within PP_0379 at 459.850 kb on + strand at 459.850 kb on + strand at 459.850 kb on + strand at 459.850 kb on + strand at 459.850 kb on + strand at 459.850 kb on + strand at 459.850 kb on + strand at 459.851 kb on - strand at 459.851 kb on - strand at 459.851 kb on - strand at 459.851 kb on - strand at 459.866 kb on - strand at 459.923 kb on + strand at 459.923 kb on + strand at 459.923 kb on + strand at 459.935 kb on - strand at 459.949 kb on + strand, within PP_0380 at 459.949 kb on + strand, within PP_0380 at 459.949 kb on + strand, within PP_0380 at 459.950 kb on - strand at 459.950 kb on - strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.986 kb on - strand, within PP_0380 at 460.010 kb on + strand at 460.010 kb on + strand at 460.010 kb on + strand at 460.011 kb on - strand at 460.044 kb on - strand at 460.044 kb on - strand at 460.044 kb on - strand at 460.046 kb on + strand at 460.047 kb on - strand at 460.095 kb on + strand at 460.100 kb on + strand at 460.100 kb on + strand at 460.100 kb on + strand at 460.101 kb on - strand at 460.126 kb on + strand at 460.130 kb on + strand at 460.161 kb on + strand at 460.161 kb on + strand at 460.161 kb on + strand at 460.161 kb on + strand at 460.162 kb on - strand at 460.162 kb on - strand at 460.218 kb on + strand at 460.219 kb on - strand at 460.219 kb on - strand at 460.289 kb on + strand at 460.570 kb on - strand, within PP_0381 at 460.730 kb on + strand, within PP_0381 at 460.731 kb on - strand, within PP_0381
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C) remove 457,973 - PP_0377 0.80 -2.5 458,005 - +0.2 458,012 + -1.6 458,027 + -1.8 458,027 + -3.0 458,028 - -0.1 458,119 + PP_0378 0.13 -1.5 458,120 - PP_0378 0.13 -2.2 458,161 + PP_0378 0.18 -1.6 458,161 + PP_0378 0.18 -1.8 458,161 + PP_0378 0.18 -0.3 458,162 - PP_0378 0.18 +0.5 458,187 + PP_0378 0.22 -1.5 458,188 - PP_0378 0.22 -1.9 458,188 - PP_0378 0.22 -2.6 458,256 + PP_0378 0.31 -1.4 458,256 + PP_0378 0.31 -1.8 458,257 - PP_0378 0.31 -3.5 458,430 - PP_0378 0.54 -0.9 458,430 - PP_0378 0.54 -2.7 458,430 - PP_0378 0.54 -0.8 458,622 + PP_0378 0.79 -2.8 458,622 + PP_0378 0.79 -0.9 458,623 - PP_0378 0.79 -0.6 458,625 + PP_0378 0.79 -2.4 458,625 + PP_0378 0.79 -1.6 458,626 - PP_0378 0.80 -1.1 458,694 + PP_0378 0.89 -1.2 458,694 + PP_0378 0.89 -1.2 458,695 - PP_0378 0.89 -1.7 458,712 + +0.2 458,712 + -1.4 458,712 + -2.0 458,713 - -2.2 458,713 - -0.5 458,713 - -0.9 458,715 + -2.2 458,716 - -1.6 458,795 - +0.8 458,804 - -0.3 458,804 - -0.0 458,940 + -0.6 458,944 + -1.4 458,944 + -1.2 458,945 - -0.6 459,053 + PP_0379 0.12 -2.8 459,054 - PP_0379 0.12 +1.8 459,054 - PP_0379 0.12 -1.3 459,054 - PP_0379 0.12 -0.6 459,054 - PP_0379 0.12 -1.2 459,057 + PP_0379 0.12 -1.8 459,057 + PP_0379 0.12 -2.2 459,057 + PP_0379 0.12 -2.3 459,058 - PP_0379 0.13 -2.2 459,246 + PP_0379 0.33 -0.4 459,246 + PP_0379 0.33 -1.9 459,246 + PP_0379 0.33 -1.1 459,268 + PP_0379 0.36 -2.5 459,268 + PP_0379 0.36 -2.0 459,352 + PP_0379 0.45 +0.2 459,352 + PP_0379 0.45 -2.6 459,700 - PP_0379 0.83 -0.3 459,700 - PP_0379 0.83 -2.2 459,850 + -1.1 459,850 + -0.9 459,850 + -0.9 459,850 + -0.6 459,850 + -0.9 459,850 + -2.9 459,850 + -2.0 459,851 - -0.0 459,851 - -1.1 459,851 - -1.8 459,851 - +2.5 459,866 - +0.3 459,923 + -2.1 459,923 + -1.6 459,923 + -1.1 459,935 - -0.3 459,949 + PP_0380 0.22 -2.3 459,949 + PP_0380 0.22 -2.4 459,949 + PP_0380 0.22 -2.3 459,950 - +1.5 459,950 - PP_0380 0.24 -0.0 459,985 + PP_0380 0.72 -0.2 459,985 + PP_0380 0.72 -0.6 459,985 + PP_0380 0.72 +0.2 459,985 + PP_0380 0.72 -0.5 459,985 + PP_0380 0.72 +1.5 459,985 + PP_0380 0.72 -0.3 459,986 - PP_0380 0.74 +1.5 460,010 + -2.3 460,010 + -1.6 460,010 + -1.5 460,011 - +0.4 460,044 - +0.3 460,044 - -0.5 460,044 - +0.1 460,046 + +0.8 460,047 - +0.8 460,095 + -0.0 460,100 + +0.3 460,100 + -0.3 460,100 + -2.3 460,101 - +0.6 460,126 + -1.0 460,130 + +1.1 460,161 + +1.4 460,161 + +0.1 460,161 + -0.6 460,161 + -0.7 460,162 - -0.1 460,162 - -0.4 460,218 + +0.6 460,219 - -2.0 460,219 - -1.4 460,289 + -1.2 460,570 - PP_0381 0.18 -0.9 460,730 + PP_0381 0.25 -2.7 460,731 - PP_0381 0.25 +1.4
Or see this region's nucleotide sequence