Experiment: 3-Hydroxyhexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0376 and PP_0377 are separated by 1 nucleotides PP_0377 and PP_0378 overlap by 4 nucleotides PP_0378 and PP_0379 are separated by 163 nucleotides
PP_0376: PP_0376 - Coenzyme PQQ synthesis protein E, at 456,620 to 457,750
_0376
PP_0377: PP_0377 - coenzyme PQQ synthesis protein D, at 457,752 to 458,027
_0377
PP_0378: PP_0378 - Pyrroloquinoline-quinone synthase, at 458,024 to 458,779
_0378
PP_0379: PP_0379 - Coenzyme PQQ synthesis protein B, at 458,943 to 459,854
_0379
Position (kb) 457
458
459 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 456.859 kb on - strand at 456.898 kb on + strand, within PP_0376 at 456.898 kb on + strand, within PP_0376 at 456.898 kb on + strand, within PP_0376 at 456.898 kb on + strand, within PP_0376 at 456.898 kb on + strand, within PP_0376 at 456.898 kb on + strand, within PP_0376 at 456.899 kb on - strand, within PP_0376 at 456.899 kb on - strand, within PP_0376 at 456.899 kb on - strand, within PP_0376 at 456.899 kb on - strand, within PP_0376 at 456.920 kb on + strand, within PP_0376 at 456.920 kb on + strand, within PP_0376 at 456.921 kb on - strand, within PP_0376 at 456.974 kb on - strand, within PP_0376 at 457.041 kb on + strand, within PP_0376 at 457.041 kb on + strand, within PP_0376 at 457.042 kb on - strand, within PP_0376 at 457.045 kb on - strand, within PP_0376 at 457.045 kb on - strand, within PP_0376 at 457.117 kb on + strand, within PP_0376 at 457.118 kb on - strand, within PP_0376 at 457.118 kb on - strand, within PP_0376 at 457.161 kb on - strand, within PP_0376 at 457.185 kb on + strand, within PP_0376 at 457.186 kb on - strand, within PP_0376 at 457.186 kb on - strand, within PP_0376 at 457.492 kb on - strand, within PP_0376 at 457.492 kb on - strand, within PP_0376 at 457.494 kb on + strand, within PP_0376 at 457.495 kb on - strand, within PP_0376 at 457.671 kb on + strand at 457.696 kb on - strand at 457.742 kb on - strand at 457.742 kb on - strand at 457.939 kb on + strand, within PP_0377 at 457.973 kb on - strand, within PP_0377 at 458.005 kb on - strand at 458.012 kb on + strand at 458.027 kb on + strand at 458.027 kb on + strand at 458.028 kb on - strand at 458.119 kb on + strand, within PP_0378 at 458.120 kb on - strand, within PP_0378 at 458.161 kb on + strand, within PP_0378 at 458.161 kb on + strand, within PP_0378 at 458.161 kb on + strand, within PP_0378 at 458.162 kb on - strand, within PP_0378 at 458.187 kb on + strand, within PP_0378 at 458.188 kb on - strand, within PP_0378 at 458.188 kb on - strand, within PP_0378 at 458.256 kb on + strand, within PP_0378 at 458.256 kb on + strand, within PP_0378 at 458.257 kb on - strand, within PP_0378 at 458.430 kb on - strand, within PP_0378 at 458.430 kb on - strand, within PP_0378 at 458.430 kb on - strand, within PP_0378 at 458.622 kb on + strand, within PP_0378 at 458.622 kb on + strand, within PP_0378 at 458.623 kb on - strand, within PP_0378 at 458.625 kb on + strand, within PP_0378 at 458.625 kb on + strand, within PP_0378 at 458.626 kb on - strand, within PP_0378 at 458.694 kb on + strand, within PP_0378 at 458.694 kb on + strand, within PP_0378 at 458.695 kb on - strand, within PP_0378 at 458.712 kb on + strand at 458.712 kb on + strand at 458.712 kb on + strand at 458.713 kb on - strand at 458.713 kb on - strand at 458.713 kb on - strand at 458.715 kb on + strand at 458.716 kb on - strand at 458.795 kb on - strand at 458.804 kb on - strand at 458.804 kb on - strand at 458.940 kb on + strand at 458.944 kb on + strand at 458.944 kb on + strand at 458.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C) remove 456,859 - -0.1 456,898 + PP_0376 0.25 -1.0 456,898 + PP_0376 0.25 +0.9 456,898 + PP_0376 0.25 -0.5 456,898 + PP_0376 0.25 -1.2 456,898 + PP_0376 0.25 -1.5 456,898 + PP_0376 0.25 -1.9 456,899 - PP_0376 0.25 -0.0 456,899 - PP_0376 0.25 -3.1 456,899 - PP_0376 0.25 -0.3 456,899 - PP_0376 0.25 -2.4 456,920 + PP_0376 0.27 -0.1 456,920 + PP_0376 0.27 -1.0 456,921 - PP_0376 0.27 -1.6 456,974 - PP_0376 0.31 -2.2 457,041 + PP_0376 0.37 -2.0 457,041 + PP_0376 0.37 -1.4 457,042 - PP_0376 0.37 -2.1 457,045 - PP_0376 0.38 -0.5 457,045 - PP_0376 0.38 -2.2 457,117 + PP_0376 0.44 +1.5 457,118 - PP_0376 0.44 -0.2 457,118 - PP_0376 0.44 -1.1 457,161 - PP_0376 0.48 -0.4 457,185 + PP_0376 0.50 -0.8 457,186 - PP_0376 0.50 -0.8 457,186 - PP_0376 0.50 -0.3 457,492 - PP_0376 0.77 -1.7 457,492 - PP_0376 0.77 -0.1 457,494 + PP_0376 0.77 +0.1 457,495 - PP_0376 0.77 -1.5 457,671 + +0.2 457,696 - -1.1 457,742 - -1.1 457,742 - -1.9 457,939 + PP_0377 0.68 -1.0 457,973 - PP_0377 0.80 -2.5 458,005 - +0.2 458,012 + -1.6 458,027 + -1.8 458,027 + -3.0 458,028 - -0.1 458,119 + PP_0378 0.13 -1.5 458,120 - PP_0378 0.13 -2.2 458,161 + PP_0378 0.18 -1.6 458,161 + PP_0378 0.18 -1.8 458,161 + PP_0378 0.18 -0.3 458,162 - PP_0378 0.18 +0.5 458,187 + PP_0378 0.22 -1.5 458,188 - PP_0378 0.22 -1.9 458,188 - PP_0378 0.22 -2.6 458,256 + PP_0378 0.31 -1.4 458,256 + PP_0378 0.31 -1.8 458,257 - PP_0378 0.31 -3.5 458,430 - PP_0378 0.54 -0.9 458,430 - PP_0378 0.54 -2.7 458,430 - PP_0378 0.54 -0.8 458,622 + PP_0378 0.79 -2.8 458,622 + PP_0378 0.79 -0.9 458,623 - PP_0378 0.79 -0.6 458,625 + PP_0378 0.79 -2.4 458,625 + PP_0378 0.79 -1.6 458,626 - PP_0378 0.80 -1.1 458,694 + PP_0378 0.89 -1.2 458,694 + PP_0378 0.89 -1.2 458,695 - PP_0378 0.89 -1.7 458,712 + +0.2 458,712 + -1.4 458,712 + -2.0 458,713 - -2.2 458,713 - -0.5 458,713 - -0.9 458,715 + -2.2 458,716 - -1.6 458,795 - +0.8 458,804 - -0.3 458,804 - -0.0 458,940 + -0.6 458,944 + -1.4 458,944 + -1.2 458,945 - -0.6
Or see this region's nucleotide sequence