Experiment: 3-Hydroxyhexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0291 and PP_0292 are separated by 27 nucleotides PP_0292 and PP_0293 are separated by 10 nucleotides PP_0293 and PP_0294 are separated by 117 nucleotides
PP_0291: PP_0291 - conserved protein of unknown function, at 351,227 to 351,487
_0291
PP_0292: PP_0292 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) <small>(from data)</small>, at 351,515 to 352,252
_0292
PP_0293: PP_0293 - Imidazole glycerol phosphate synthase subunit HisF, at 352,263 to 353,033
_0293
PP_0294: PP_0294 - Choline / carnitine / glycine betaine ABC transporter, ATPase component <small>(from data)</small>, at 353,151 to 354,329
_0294
Position (kb) 352
353
354 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 351.396 kb on - strand, within PP_0291 at 351.396 kb on - strand, within PP_0291 at 351.398 kb on + strand, within PP_0291 at 351.398 kb on + strand, within PP_0291 at 351.399 kb on - strand, within PP_0291 at 351.399 kb on - strand, within PP_0291 at 351.399 kb on - strand, within PP_0291 at 351.399 kb on - strand, within PP_0291 at 351.499 kb on + strand at 351.499 kb on + strand at 351.523 kb on + strand at 351.524 kb on - strand at 351.590 kb on - strand, within PP_0292 at 351.791 kb on + strand, within PP_0292 at 351.792 kb on - strand, within PP_0292 at 351.792 kb on - strand, within PP_0292 at 351.792 kb on - strand, within PP_0292 at 351.812 kb on + strand at 351.813 kb on - strand, within PP_0292 at 351.813 kb on - strand, within PP_0292 at 352.193 kb on + strand at 352.193 kb on + strand at 352.194 kb on - strand at 352.194 kb on - strand at 352.194 kb on - strand at 352.194 kb on - strand at 352.241 kb on + strand at 352.242 kb on - strand at 352.242 kb on - strand at 352.242 kb on - strand at 352.242 kb on - strand at 352.242 kb on - strand at 352.242 kb on - strand at 352.457 kb on + strand, within PP_0293 at 352.457 kb on + strand, within PP_0293 at 352.457 kb on + strand, within PP_0293 at 352.977 kb on + strand at 352.977 kb on + strand at 352.978 kb on - strand at 353.001 kb on + strand at 353.002 kb on - strand at 353.002 kb on - strand at 353.427 kb on - strand, within PP_0294 at 353.519 kb on + strand, within PP_0294 at 353.542 kb on + strand, within PP_0294 at 353.542 kb on + strand, within PP_0294 at 353.543 kb on - strand, within PP_0294 at 353.543 kb on - strand, within PP_0294 at 353.618 kb on + strand, within PP_0294 at 353.618 kb on + strand, within PP_0294
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C) remove 351,396 - PP_0291 0.65 -2.4 351,396 - PP_0291 0.65 -1.1 351,398 + PP_0291 0.66 +0.7 351,398 + PP_0291 0.66 -0.0 351,399 - PP_0291 0.66 -0.7 351,399 - PP_0291 0.66 -1.6 351,399 - PP_0291 0.66 -0.3 351,399 - PP_0291 0.66 -1.6 351,499 + -2.6 351,499 + -2.6 351,523 + -0.1 351,524 - -3.3 351,590 - PP_0292 0.10 -0.8 351,791 + PP_0292 0.37 -3.7 351,792 - PP_0292 0.38 -0.5 351,792 - PP_0292 0.38 -2.0 351,792 - PP_0292 0.38 -2.5 351,812 + +1.5 351,813 - PP_0292 0.40 -2.3 351,813 - PP_0292 0.40 -5.0 352,193 + -1.3 352,193 + -1.9 352,194 - -3.6 352,194 - -1.0 352,194 - -2.0 352,194 - -2.3 352,241 + -0.3 352,242 - -1.3 352,242 - -2.3 352,242 - -1.0 352,242 - -2.0 352,242 - -3.9 352,242 - +1.5 352,457 + PP_0293 0.25 -3.6 352,457 + PP_0293 0.25 +1.5 352,457 + PP_0293 0.25 -2.7 352,977 + -3.4 352,977 + -0.5 352,978 - +0.9 353,001 + -2.4 353,002 - -0.8 353,002 - -1.5 353,427 - PP_0294 0.23 +0.0 353,519 + PP_0294 0.31 +0.4 353,542 + PP_0294 0.33 +0.3 353,542 + PP_0294 0.33 +1.0 353,543 - PP_0294 0.33 -0.5 353,543 - PP_0294 0.33 +0.2 353,618 + PP_0294 0.40 +0.9 353,618 + PP_0294 0.40 -0.2
Or see this region's nucleotide sequence