Experiment: 3-Hydroxyhexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0118 and PP_0119 overlap by 4 nucleotides PP_0119 and PP_0120 are separated by 66 nucleotides PP_0120 and PP_0121 are separated by 49 nucleotides
PP_0118: PP_0118 - zinc import ATP-binding protein, at 123,860 to 124,633
_0118
PP_0119: PP_0119 - putative zinc uptake regulation protein ZUR, at 124,630 to 125,115
_0119
PP_0120: PP_0120 - putative zinc ABC transporter, at 125,182 to 126,090
_0120
PP_0121: PP_0121 - homoserine kinase, at 126,140 to 127,090
_0121
Position (kb) 125
126
127 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 124.187 kb on + strand, within PP_0118 at 124.187 kb on + strand, within PP_0118 at 124.188 kb on - strand, within PP_0118 at 124.271 kb on - strand, within PP_0118 at 124.271 kb on - strand, within PP_0118 at 124.343 kb on + strand, within PP_0118 at 124.344 kb on - strand, within PP_0118 at 124.419 kb on + strand, within PP_0118 at 124.419 kb on + strand, within PP_0118 at 124.419 kb on + strand, within PP_0118 at 124.420 kb on - strand, within PP_0118 at 124.448 kb on + strand, within PP_0118 at 124.482 kb on - strand, within PP_0118 at 124.482 kb on - strand, within PP_0118 at 124.650 kb on + strand at 124.651 kb on - strand at 124.853 kb on - strand, within PP_0119 at 124.889 kb on + strand, within PP_0119 at 124.889 kb on + strand, within PP_0119 at 125.065 kb on + strand, within PP_0119 at 125.065 kb on + strand, within PP_0119 at 125.065 kb on + strand, within PP_0119 at 125.066 kb on - strand, within PP_0119 at 125.066 kb on - strand, within PP_0119 at 125.144 kb on + strand at 125.145 kb on - strand at 125.145 kb on - strand at 125.145 kb on - strand at 125.145 kb on - strand at 125.145 kb on - strand at 125.147 kb on + strand at 125.147 kb on + strand at 125.147 kb on + strand at 125.147 kb on + strand at 125.148 kb on - strand at 125.153 kb on - strand at 125.174 kb on + strand at 125.256 kb on + strand at 125.256 kb on + strand at 125.347 kb on + strand, within PP_0120 at 125.398 kb on + strand, within PP_0120 at 125.452 kb on - strand, within PP_0120 at 125.452 kb on - strand, within PP_0120 at 125.452 kb on - strand, within PP_0120 at 125.572 kb on - strand, within PP_0120 at 125.572 kb on - strand, within PP_0120 at 125.727 kb on + strand, within PP_0120 at 125.727 kb on + strand, within PP_0120 at 125.728 kb on - strand, within PP_0120 at 125.728 kb on - strand, within PP_0120 at 125.807 kb on - strand, within PP_0120 at 126.031 kb on + strand at 126.032 kb on - strand at 126.088 kb on + strand at 126.088 kb on + strand at 126.088 kb on + strand at 126.088 kb on + strand at 126.089 kb on - strand at 126.089 kb on - strand at 126.089 kb on - strand at 126.089 kb on - strand at 126.089 kb on - strand at 126.089 kb on - strand at 126.141 kb on + strand at 126.141 kb on + strand at 126.345 kb on + strand at 126.629 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxyhexanoic (C) remove 124,187 + PP_0118 0.42 -0.7 124,187 + PP_0118 0.42 -0.5 124,188 - PP_0118 0.42 +2.6 124,271 - PP_0118 0.53 -1.2 124,271 - PP_0118 0.53 -1.1 124,343 + PP_0118 0.62 -1.1 124,344 - PP_0118 0.63 -1.3 124,419 + PP_0118 0.72 -1.7 124,419 + PP_0118 0.72 +0.0 124,419 + PP_0118 0.72 -2.8 124,420 - PP_0118 0.72 -2.0 124,448 + PP_0118 0.76 -1.9 124,482 - PP_0118 0.80 -0.5 124,482 - PP_0118 0.80 -1.2 124,650 + -0.9 124,651 - -0.3 124,853 - PP_0119 0.46 -0.0 124,889 + PP_0119 0.53 -1.5 124,889 + PP_0119 0.53 -0.2 125,065 + PP_0119 0.90 -0.6 125,065 + PP_0119 0.90 -0.3 125,065 + PP_0119 0.90 +0.3 125,066 - PP_0119 0.90 +0.6 125,066 - PP_0119 0.90 -0.2 125,144 + -1.0 125,145 - +0.3 125,145 - -0.2 125,145 - -0.6 125,145 - +0.1 125,145 - +1.3 125,147 + -0.2 125,147 + -0.1 125,147 + -1.7 125,147 + -0.8 125,148 - +0.5 125,153 - -0.3 125,174 + -0.4 125,256 + -0.6 125,256 + -0.7 125,347 + PP_0120 0.18 -0.7 125,398 + PP_0120 0.24 -1.5 125,452 - PP_0120 0.30 -0.6 125,452 - PP_0120 0.30 -0.8 125,452 - PP_0120 0.30 -0.6 125,572 - PP_0120 0.43 -0.7 125,572 - PP_0120 0.43 -1.9 125,727 + PP_0120 0.60 -1.0 125,727 + PP_0120 0.60 -2.4 125,728 - PP_0120 0.60 -0.5 125,728 - PP_0120 0.60 -1.9 125,807 - PP_0120 0.69 -1.7 126,031 + -1.2 126,032 - -0.8 126,088 + -0.1 126,088 + -0.1 126,088 + -1.3 126,088 + +0.6 126,089 - +0.8 126,089 - -0.8 126,089 - -0.1 126,089 - -0.0 126,089 - +1.2 126,089 - +0.2 126,141 + +0.8 126,141 + -0.1 126,345 + +1.6 126,629 + +1.6
Or see this region's nucleotide sequence