Experiment: rac-3-Hydroxypentanoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4578 and PP_4579 are separated by 130 nucleotides PP_4579 and PP_4580 are separated by 72 nucleotides PP_4580 and PP_4581 are separated by 9 nucleotides
PP_4578: PP_4578 - Major facilitator family transporter, at 5,197,297 to 5,198,583
_4578
PP_4579: PP_4579 - Transcriptional regulator, LysR family, at 5,198,714 to 5,199,625
_4579
PP_4580: PP_4580 - conserved protein of unknown function, at 5,199,698 to 5,200,219
_4580
PP_4581: PP_4581 - putative amidotransferase, at 5,200,229 to 5,201,002
_4581
Position (kb) 5198
5199
5200 Strain fitness (log2 ratio) -1
0
1
2 at 5197.715 kb on + strand, within PP_4578 at 5197.715 kb on + strand, within PP_4578 at 5197.715 kb on + strand, within PP_4578 at 5197.715 kb on + strand, within PP_4578 at 5197.715 kb on + strand, within PP_4578 at 5197.715 kb on + strand, within PP_4578 at 5197.716 kb on - strand, within PP_4578 at 5197.716 kb on - strand, within PP_4578 at 5197.716 kb on - strand, within PP_4578 at 5197.742 kb on + strand, within PP_4578 at 5197.742 kb on + strand, within PP_4578 at 5197.742 kb on + strand, within PP_4578 at 5197.743 kb on - strand, within PP_4578 at 5197.743 kb on - strand, within PP_4578 at 5197.814 kb on + strand, within PP_4578 at 5197.814 kb on + strand, within PP_4578 at 5197.814 kb on + strand, within PP_4578 at 5197.815 kb on - strand, within PP_4578 at 5197.817 kb on + strand, within PP_4578 at 5197.892 kb on + strand, within PP_4578 at 5197.940 kb on + strand, within PP_4578 at 5197.940 kb on + strand, within PP_4578 at 5198.060 kb on + strand, within PP_4578 at 5198.228 kb on + strand, within PP_4578 at 5198.229 kb on - strand, within PP_4578 at 5198.229 kb on - strand, within PP_4578 at 5198.293 kb on - strand, within PP_4578 at 5198.341 kb on + strand, within PP_4578 at 5198.342 kb on - strand, within PP_4578 at 5198.342 kb on - strand, within PP_4578 at 5198.418 kb on + strand, within PP_4578 at 5198.419 kb on - strand, within PP_4578 at 5198.490 kb on + strand at 5198.490 kb on + strand at 5198.550 kb on + strand at 5198.551 kb on - strand at 5198.603 kb on + strand at 5198.612 kb on - strand at 5198.905 kb on - strand, within PP_4579 at 5198.905 kb on - strand, within PP_4579 at 5198.905 kb on - strand, within PP_4579 at 5198.913 kb on - strand, within PP_4579 at 5199.007 kb on + strand, within PP_4579 at 5199.007 kb on + strand, within PP_4579 at 5199.008 kb on - strand, within PP_4579 at 5199.008 kb on - strand, within PP_4579 at 5199.139 kb on + strand, within PP_4579 at 5199.139 kb on + strand, within PP_4579 at 5199.139 kb on + strand, within PP_4579 at 5199.140 kb on - strand, within PP_4579 at 5199.140 kb on - strand, within PP_4579 at 5199.140 kb on - strand, within PP_4579 at 5199.245 kb on + strand, within PP_4579 at 5199.245 kb on + strand, within PP_4579 at 5199.246 kb on - strand, within PP_4579 at 5199.246 kb on - strand at 5199.246 kb on - strand, within PP_4579 at 5199.682 kb on - strand at 5199.688 kb on - strand at 5199.827 kb on + strand, within PP_4580 at 5199.843 kb on + strand, within PP_4580 at 5199.843 kb on + strand, within PP_4580 at 5199.844 kb on - strand, within PP_4580 at 5199.850 kb on - strand, within PP_4580 at 5199.890 kb on + strand, within PP_4580 at 5200.138 kb on - strand, within PP_4580 at 5200.138 kb on - strand, within PP_4580 at 5200.138 kb on - strand, within PP_4580 at 5200.206 kb on + strand at 5200.207 kb on - strand at 5200.231 kb on - strand at 5200.231 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rac-3-Hydroxypentanoic Acid (C) remove 5,197,715 + PP_4578 0.32 -0.7 5,197,715 + PP_4578 0.32 -0.3 5,197,715 + PP_4578 0.32 +0.3 5,197,715 + PP_4578 0.32 -0.0 5,197,715 + PP_4578 0.32 -0.5 5,197,715 + PP_4578 0.32 -0.0 5,197,716 - PP_4578 0.33 +0.5 5,197,716 - PP_4578 0.33 +0.2 5,197,716 - PP_4578 0.33 +0.4 5,197,742 + PP_4578 0.35 -0.4 5,197,742 + PP_4578 0.35 -0.6 5,197,742 + PP_4578 0.35 +0.0 5,197,743 - PP_4578 0.35 -0.3 5,197,743 - PP_4578 0.35 -0.2 5,197,814 + PP_4578 0.40 -1.0 5,197,814 + PP_4578 0.40 -0.3 5,197,814 + PP_4578 0.40 -0.2 5,197,815 - PP_4578 0.40 +0.4 5,197,817 + PP_4578 0.40 -0.3 5,197,892 + PP_4578 0.46 -0.1 5,197,940 + PP_4578 0.50 -0.1 5,197,940 + PP_4578 0.50 -0.2 5,198,060 + PP_4578 0.59 +1.1 5,198,228 + PP_4578 0.72 +1.6 5,198,229 - PP_4578 0.72 +0.9 5,198,229 - PP_4578 0.72 +0.0 5,198,293 - PP_4578 0.77 -0.6 5,198,341 + PP_4578 0.81 +0.9 5,198,342 - PP_4578 0.81 -1.0 5,198,342 - PP_4578 0.81 +0.3 5,198,418 + PP_4578 0.87 -0.3 5,198,419 - PP_4578 0.87 +0.7 5,198,490 + -1.1 5,198,490 + -0.1 5,198,550 + +0.3 5,198,551 - +1.2 5,198,603 + -1.0 5,198,612 - +0.4 5,198,905 - PP_4579 0.21 +0.4 5,198,905 - PP_4579 0.21 +0.7 5,198,905 - PP_4579 0.21 +0.2 5,198,913 - PP_4579 0.22 -0.6 5,199,007 + PP_4579 0.32 +2.1 5,199,007 + PP_4579 0.32 +0.2 5,199,008 - PP_4579 0.32 +0.4 5,199,008 - PP_4579 0.32 +1.5 5,199,139 + PP_4579 0.47 +0.7 5,199,139 + PP_4579 0.47 +0.3 5,199,139 + PP_4579 0.47 +0.0 5,199,140 - PP_4579 0.47 -0.0 5,199,140 - PP_4579 0.47 +0.2 5,199,140 - PP_4579 0.47 +0.4 5,199,245 + PP_4579 0.58 +0.4 5,199,245 + PP_4579 0.58 -0.1 5,199,246 - PP_4579 0.58 +1.4 5,199,246 - +0.9 5,199,246 - PP_4579 0.58 +0.6 5,199,682 - -0.6 5,199,688 - +0.6 5,199,827 + PP_4580 0.25 -0.0 5,199,843 + PP_4580 0.28 +0.0 5,199,843 + PP_4580 0.28 -1.6 5,199,844 - PP_4580 0.28 +0.1 5,199,850 - PP_4580 0.29 +0.5 5,199,890 + PP_4580 0.37 +0.9 5,200,138 - PP_4580 0.84 -0.8 5,200,138 - PP_4580 0.84 +0.1 5,200,138 - PP_4580 0.84 -0.5 5,200,206 + +0.6 5,200,207 - -0.1 5,200,231 - +0.5 5,200,231 - +0.0
Or see this region's nucleotide sequence