Strain Fitness in Pseudomonas putida KT2440 around PP_4783

Experiment: D-Glucaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4782 and PP_4783 are separated by 13 nucleotidesPP_4783 and PP_4784 are separated by 16 nucleotides PP_4782: PP_4782 - Phosphomethylpyrimidine kinase, at 5,445,045 to 5,445,842 _4782 PP_4783: PP_4783 - Thiamine-phosphate synthase, at 5,445,856 to 5,446,479 _4783 PP_4784: PP_4784 - Glutamate-1-semialdehyde 2,1-aminomutase, at 5,446,496 to 5,447,779 _4784 Position (kb) 5445 5446 5447Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5444.881 kb on + strandat 5444.882 kb on - strandat 5444.882 kb on - strandat 5444.882 kb on - strandat 5444.882 kb on - strandat 5444.969 kb on - strandat 5445.031 kb on + strandat 5445.032 kb on - strandat 5445.050 kb on + strandat 5445.050 kb on + strandat 5445.050 kb on + strandat 5445.051 kb on - strandat 5445.051 kb on - strandat 5445.051 kb on - strandat 5445.051 kb on - strandat 5445.054 kb on + strandat 5445.054 kb on + strandat 5445.055 kb on - strandat 5445.125 kb on + strand, within PP_4782at 5445.126 kb on - strand, within PP_4782at 5445.424 kb on - strand, within PP_4782at 5445.610 kb on - strand, within PP_4782at 5445.663 kb on + strand, within PP_4782at 5445.663 kb on + strand, within PP_4782at 5445.663 kb on + strand, within PP_4782at 5445.664 kb on - strand, within PP_4782at 5445.756 kb on + strand, within PP_4782at 5445.756 kb on + strand, within PP_4782at 5445.804 kb on + strandat 5445.804 kb on + strandat 5445.843 kb on + strandat 5445.874 kb on + strandat 5446.222 kb on + strand, within PP_4783at 5446.489 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucaric (C)
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5,444,881 + -0.5
5,444,882 - -0.8
5,444,882 - -0.2
5,444,882 - -0.2
5,444,882 - -0.7
5,444,969 - -0.7
5,445,031 + -0.1
5,445,032 - +0.2
5,445,050 + -0.9
5,445,050 + -3.1
5,445,050 + +1.3
5,445,051 - -1.2
5,445,051 - +0.5
5,445,051 - +2.8
5,445,051 - +0.5
5,445,054 + -0.6
5,445,054 + +1.8
5,445,055 - -0.2
5,445,125 + PP_4782 0.10 -0.9
5,445,126 - PP_4782 0.10 +0.2
5,445,424 - PP_4782 0.47 -1.0
5,445,610 - PP_4782 0.71 -0.7
5,445,663 + PP_4782 0.77 -3.1
5,445,663 + PP_4782 0.77 -1.7
5,445,663 + PP_4782 0.77 -2.6
5,445,664 - PP_4782 0.78 +1.2
5,445,756 + PP_4782 0.89 -3.2
5,445,756 + PP_4782 0.89 -3.2
5,445,804 + -1.7
5,445,804 + -3.9
5,445,843 + -0.2
5,445,874 + -2.0
5,446,222 + PP_4783 0.59 +0.5
5,446,489 + +0.5

Or see this region's nucleotide sequence