Experiment: D-Glucaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0493 and PP_0494 overlap by 4 nucleotides PP_0494 and PP_t75 are separated by 6 nucleotides PP_t75 and PP_0495 are separated by 106 nucleotides
PP_0493: PP_0493 - selenocysteine synthase, at 580,711 to 582,138
_0493
PP_0494: PP_0494 - selenocysteyl-tRNA-specific translation elongation factor, at 582,135 to 584,057
_0494
PP_t75: PP_t75 - tRNA-Sec, at 584,064 to 584,159
_t75
PP_0495: PP_0495 - type 1 L-asparaginase, at 584,266 to 585,255
_0495
Position (kb) 582
583
584
585 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 581.193 kb on - strand, within PP_0493 at 581.193 kb on - strand, within PP_0493 at 581.331 kb on + strand, within PP_0493 at 581.332 kb on - strand, within PP_0493 at 581.332 kb on - strand, within PP_0493 at 581.347 kb on + strand, within PP_0493 at 581.404 kb on + strand, within PP_0493 at 581.404 kb on + strand, within PP_0493 at 581.405 kb on - strand, within PP_0493 at 581.405 kb on - strand, within PP_0493 at 581.436 kb on + strand, within PP_0493 at 581.437 kb on - strand, within PP_0493 at 581.454 kb on + strand, within PP_0493 at 581.454 kb on + strand, within PP_0493 at 581.455 kb on - strand, within PP_0493 at 581.474 kb on + strand, within PP_0493 at 581.475 kb on - strand, within PP_0493 at 581.517 kb on + strand, within PP_0493 at 581.549 kb on + strand, within PP_0493 at 582.329 kb on + strand, within PP_0494 at 582.380 kb on - strand, within PP_0494 at 582.650 kb on + strand, within PP_0494 at 582.650 kb on + strand, within PP_0494 at 582.651 kb on - strand, within PP_0494 at 582.651 kb on - strand, within PP_0494 at 582.651 kb on - strand, within PP_0494 at 582.758 kb on + strand, within PP_0494 at 582.758 kb on + strand, within PP_0494 at 582.758 kb on + strand, within PP_0494 at 582.758 kb on + strand, within PP_0494 at 582.758 kb on + strand, within PP_0494 at 582.758 kb on + strand, within PP_0494 at 582.759 kb on - strand, within PP_0494 at 582.759 kb on - strand, within PP_0494 at 582.759 kb on - strand, within PP_0494 at 582.963 kb on + strand, within PP_0494 at 582.964 kb on - strand, within PP_0494 at 582.964 kb on - strand, within PP_0494 at 582.971 kb on - strand, within PP_0494 at 583.037 kb on - strand, within PP_0494 at 583.645 kb on + strand, within PP_0494 at 583.777 kb on + strand, within PP_0494 at 583.897 kb on + strand at 583.897 kb on + strand at 583.898 kb on - strand at 583.922 kb on + strand at 583.922 kb on + strand at 583.922 kb on + strand at 584.203 kb on - strand at 584.203 kb on - strand at 584.339 kb on - strand at 584.426 kb on + strand, within PP_0495 at 584.426 kb on + strand, within PP_0495 at 584.427 kb on - strand, within PP_0495 at 584.427 kb on - strand, within PP_0495 at 584.427 kb on - strand, within PP_0495 at 584.427 kb on - strand, within PP_0495 at 584.467 kb on - strand, within PP_0495 at 584.552 kb on + strand, within PP_0495 at 584.586 kb on - strand, within PP_0495 at 584.587 kb on + strand, within PP_0495 at 584.626 kb on + strand, within PP_0495 at 584.670 kb on - strand, within PP_0495 at 584.670 kb on - strand, within PP_0495 at 584.756 kb on - strand, within PP_0495 at 584.798 kb on + strand, within PP_0495 at 584.798 kb on + strand, within PP_0495 at 584.798 kb on + strand, within PP_0495 at 584.799 kb on - strand, within PP_0495 at 584.911 kb on + strand, within PP_0495 at 584.912 kb on - strand, within PP_0495 at 584.912 kb on - strand, within PP_0495 at 584.912 kb on - strand, within PP_0495 at 584.961 kb on - strand, within PP_0495
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucaric (C) remove 581,193 - PP_0493 0.34 -0.4 581,193 - PP_0493 0.34 -0.5 581,331 + PP_0493 0.43 +0.5 581,332 - PP_0493 0.43 -0.4 581,332 - PP_0493 0.43 -0.2 581,347 + PP_0493 0.45 +0.5 581,404 + PP_0493 0.49 -0.2 581,404 + PP_0493 0.49 +0.2 581,405 - PP_0493 0.49 -0.2 581,405 - PP_0493 0.49 -0.0 581,436 + PP_0493 0.51 +1.0 581,437 - PP_0493 0.51 +0.4 581,454 + PP_0493 0.52 -0.6 581,454 + PP_0493 0.52 +0.5 581,455 - PP_0493 0.52 -0.2 581,474 + PP_0493 0.53 -1.2 581,475 - PP_0493 0.54 +0.5 581,517 + PP_0493 0.56 +0.2 581,549 + PP_0493 0.59 +0.0 582,329 + PP_0494 0.10 +1.9 582,380 - PP_0494 0.13 +0.6 582,650 + PP_0494 0.27 +0.2 582,650 + PP_0494 0.27 +0.7 582,651 - PP_0494 0.27 +0.2 582,651 - PP_0494 0.27 +0.6 582,651 - PP_0494 0.27 -0.0 582,758 + PP_0494 0.32 +1.1 582,758 + PP_0494 0.32 +0.1 582,758 + PP_0494 0.32 +0.8 582,758 + PP_0494 0.32 +0.6 582,758 + PP_0494 0.32 -1.1 582,758 + PP_0494 0.32 -1.3 582,759 - PP_0494 0.32 +0.4 582,759 - PP_0494 0.32 +1.6 582,759 - PP_0494 0.32 +0.8 582,963 + PP_0494 0.43 +1.8 582,964 - PP_0494 0.43 +1.2 582,964 - PP_0494 0.43 -0.0 582,971 - PP_0494 0.43 -1.1 583,037 - PP_0494 0.47 +0.2 583,645 + PP_0494 0.79 -0.3 583,777 + PP_0494 0.85 -0.2 583,897 + +0.3 583,897 + +1.0 583,898 - -0.5 583,922 + +1.3 583,922 + +0.2 583,922 + +2.4 584,203 - +0.6 584,203 - -0.5 584,339 - +0.8 584,426 + PP_0495 0.16 -0.3 584,426 + PP_0495 0.16 +3.8 584,427 - PP_0495 0.16 +2.8 584,427 - PP_0495 0.16 +0.2 584,427 - PP_0495 0.16 +0.1 584,427 - PP_0495 0.16 -0.5 584,467 - PP_0495 0.20 +0.2 584,552 + PP_0495 0.29 -0.0 584,586 - PP_0495 0.32 +2.8 584,587 + PP_0495 0.32 +0.1 584,626 + PP_0495 0.36 +1.0 584,670 - PP_0495 0.41 -0.0 584,670 - PP_0495 0.41 +1.0 584,756 - PP_0495 0.49 +0.8 584,798 + PP_0495 0.54 -1.0 584,798 + PP_0495 0.54 +1.6 584,798 + PP_0495 0.54 +1.2 584,799 - PP_0495 0.54 +1.8 584,911 + PP_0495 0.65 +0.3 584,912 - PP_0495 0.65 +2.4 584,912 - PP_0495 0.65 +1.2 584,912 - PP_0495 0.65 +1.6 584,961 - PP_0495 0.70 +1.2
Or see this region's nucleotide sequence