Strain Fitness in Pseudomonas putida KT2440 around PP_5735

Experiment: Rhamnogalacturonan - from potato (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan - from potato (C)
6,143,701	-		PP_5388	0.82	+0.5
6,143,701	-		PP_5388	0.82	-0.1
6,143,701	-		PP_5388	0.82	+0.1
6,143,701	-		PP_5388	0.82	-0.7
6,143,701	-		PP_5388	0.82	+3.6
6,143,701	-		PP_5388	0.82	-1.2
6,143,759	+				-0.2
6,143,759	+				-0.4
6,143,760	-				+0.1
6,143,760	-				-0.2
6,143,768	+				+0.6
6,143,772	+				-0.5
6,143,772	+				+0.9
6,143,772	+				+0.4
6,143,772	+				-0.5
6,143,772	+				+0.1
6,143,773	-				-0.0
6,143,773	-				+1.6
6,143,821	-				-0.9
6,143,821	-				-1.1
6,143,847	+				-0.1
6,143,847	+				+0.5
6,143,847	+				-1.8
6,143,848	-				+0.6
6,143,848	-				+0.2
6,143,848	-				-0.7
6,143,848	-				+0.2
6,143,876	-				-0.9
6,143,905	+				-0.1
6,143,906	-				+2.0
6,143,943	-				-0.8
6,144,007	-				+1.5
6,144,007	-				+0.1
6,144,024	-		PP_5734	0.10	-0.4
6,144,072	+		PP_5734	0.20	-0.2
6,144,072	+		PP_5734	0.20	+0.0
6,144,073	-		PP_5734	0.20	+1.3
6,144,073	-		PP_5734	0.20	+0.1
6,144,130	+		PP_5734	0.32	-0.3
6,144,131	-		PP_5734	0.32	+0.4
6,144,131	-		PP_5734	0.32	-0.3
6,144,136	+		PP_5734	0.33	-0.6
6,144,150	+		PP_5734	0.36	-1.1
6,144,186	-		PP_5734	0.43	-1.1
6,144,186	-		PP_5734	0.43	-0.2
6,144,232	+		PP_5734	0.53	+0.2
6,144,232	+		PP_5734	0.53	-0.6
6,144,232	+		PP_5734	0.53	+0.4
6,144,247	+		PP_5734	0.56	-0.3
6,144,259	-		PP_5734	0.58	-0.4
6,144,285	+		PP_5734	0.63	-0.5
6,144,285	+		PP_5734	0.63	-0.4
6,144,285	+		PP_5734	0.63	+0.1
6,144,286	-		PP_5734	0.64	-1.5
6,144,286	-		PP_5734	0.64	+0.7
6,144,286	-		PP_5734	0.64	+0.3
6,144,318	+		PP_5734	0.70	-0.3
6,144,318	+		PP_5734	0.70	-1.4
6,144,318	+		PP_5734	0.70	+1.0
6,144,318	+		PP_5734	0.70	-1.3
6,144,318	+		PP_5734	0.70	+0.6
6,144,318	+		PP_5734	0.70	+0.4
6,144,319	-		PP_5734	0.70	-1.2
6,144,319	-		PP_5734	0.70	-0.6
6,144,319	-		PP_5734	0.70	-0.0
6,144,341	+		PP_5734	0.75	-1.0
6,144,341	+		PP_5734	0.75	+0.4
6,144,342	-		PP_5734	0.75	+0.1
6,144,342	-		PP_5734	0.75	+1.2
6,144,379	+		PP_5734	0.83	+0.1
6,144,382	+		PP_5734	0.83	+0.5
6,144,382	+		PP_5734	0.83	-0.1
6,144,382	+		PP_5734	0.83	-0.8
6,144,383	-		PP_5734	0.83	+0.4
6,144,383	-		PP_5734	0.83	+0.6
6,144,387	+		PP_5734	0.84	-0.4
6,144,387	+		PP_5734	0.84	-0.0
6,144,388	-		PP_5734	0.84	-0.5
6,144,401	+		PP_5734	0.87	-0.6
6,144,459	+				+2.3
6,144,459	+				+0.4
6,144,459	+				-0.7
6,144,491	+				-0.8
6,144,491	+				-0.1
6,144,492	-				+0.5
6,144,517	+				-0.4
6,144,551	+				+0.9
6,144,551	+				-1.2
6,144,551	+				-1.0
6,144,551	+				+0.3
6,144,551	+				+2.0
6,144,555	+				-0.4
6,144,555	+				+1.6
6,144,555	+				+0.3
6,144,555	+				-0.2
6,144,555	+				-0.4
6,144,555	+				-1.0
6,144,556	-				-2.2
6,144,556	-				-0.3
6,144,556	-				-0.7
6,144,556	-				+0.3
6,144,713	+		PP_5735	0.78	-0.7
6,144,714	-		PP_5735	0.79	-0.1
6,144,718	+		PP_5735	0.81	+1.9
6,144,718	+		PP_5735	0.81	-0.4
6,144,718	+		PP_5735	0.81	-0.1
6,144,719	-		PP_5735	0.81	+0.6
6,144,760	+				-1.1
6,144,760	+				+0.6
6,144,760	+				+0.9
6,144,760	+				-0.5
6,144,761	-				-1.0
6,144,761	-				+0.2
6,144,761	-				+1.3
6,144,774	+				+0.7
6,144,775	-				-0.6
6,144,775	-				+0.1
6,144,781	+				-0.9
6,144,781	+				+0.8
6,144,781	+				-1.0
6,144,782	-				-0.5
6,144,782	-				+0.4
6,144,788	+				+0.2
6,144,788	+				-1.1
6,144,788	+				+2.0
6,144,788	+				+0.3
6,144,789	-				-0.0
6,144,830	+				+1.0
6,144,830	+				+0.6
6,144,831	-				-0.6
6,144,831	-				+0.8
6,144,831	-				+0.6
6,144,837	-				+0.4
6,144,845	+				-0.7
6,144,847	+		PP_5389	0.10	-0.3
6,144,847	+		PP_5389	0.10	+0.3
6,144,847	+		PP_5389	0.10	+0.9
6,144,847	+		PP_5389	0.10	+0.9
6,144,847	+		PP_5389	0.10	-1.3
6,144,847	+		PP_5389	0.10	-0.8
6,144,848	-		PP_5389	0.10	+0.0
6,144,848	-		PP_5389	0.10	+0.1
6,144,848	-		PP_5389	0.10	-0.8
6,144,848	-		PP_5389	0.10	+0.2
6,144,856	+		PP_5389	0.12	-1.3
6,144,913	+		PP_5389	0.20	+0.4
6,144,913	+		PP_5389	0.20	-1.6
6,144,914	-		PP_5389	0.20	+0.5
6,144,914	-		PP_5389	0.20	+1.4
6,145,003	+		PP_5389	0.34	-1.4
6,145,004	-		PP_5389	0.34	-0.4
6,145,004	-		PP_5389	0.34	-0.0
6,145,004	-		PP_5389	0.34	-0.5
6,145,028	-		PP_5389	0.38	-0.6
6,145,069	+		PP_5389	0.44	+0.9
6,145,069	+		PP_5389	0.44	-1.2
6,145,069	+		PP_5389	0.44	+0.1
6,145,069	+		PP_5389	0.44	-0.3
6,145,069	+		PP_5389	0.44	-0.5
6,145,071	+		PP_5389	0.44	+0.6
6,145,071	+		PP_5389	0.44	-0.5
6,145,071	+		PP_5389	0.44	+0.9
6,145,072	-		PP_5389	0.44	+0.2
6,145,072	-		PP_5389	0.44	-0.6
6,145,072	-		PP_5389	0.44	+0.2
6,145,072	-		PP_5389	0.44	+0.2
6,145,072	-		PP_5389	0.44	-0.2
6,145,072	-		PP_5389	0.44	-0.2
6,145,072	-		PP_5389	0.44	+0.4
6,145,072	-		PP_5389	0.44	-0.2
6,145,072	-		PP_5389	0.44	-0.9
6,145,099	+		PP_5389	0.48	-0.5
6,145,100	-		PP_5389	0.48	-0.2
6,145,100	-		PP_5389	0.48	-0.3
6,145,119	+		PP_5389	0.51	-1.0
6,145,119	+		PP_5389	0.51	-0.9
6,145,119	+		PP_5389	0.51	-0.2
6,145,119	+		PP_5389	0.51	-0.3
6,145,120	-		PP_5389	0.52	-0.5
6,145,123	+		PP_5389	0.52	+0.4
6,145,123	+		PP_5389	0.52	+1.2
6,145,124	-		PP_5389	0.52	-0.1
6,145,124	-		PP_5389	0.52	-0.0
6,145,124	-		PP_5389	0.52	-0.3
6,145,255	+		PP_5389	0.72	+0.7
6,145,255	+		PP_5389	0.72	+0.4
6,145,256	-		PP_5389	0.72	-1.7
6,145,276	+		PP_5389	0.75	-0.5
6,145,277	-		PP_5389	0.75	-0.0
6,145,277	-		PP_5389	0.75	+0.1
6,145,277	-		PP_5389	0.75	+0.6
6,145,277	-		PP_5389	0.75	+0.1
6,145,277	-		PP_5389	0.75	+1.0
6,145,277	-		PP_5389	0.75	+0.0
6,145,462	+				-0.2
6,145,463	-				+1.4
6,145,569	+		PP_5390	0.48	-2.6
6,145,569	+		PP_5390	0.48	+0.7
6,145,569	+		PP_5390	0.48	-1.6
6,145,570	-		PP_5390	0.49	-0.8
6,145,570	-		PP_5390	0.49	+0.4
6,145,570	-		PP_5390	0.49	+0.8
6,145,617	+		PP_5390	0.66	-0.3
6,145,637	+		PP_5390	0.73	+0.6
6,145,638	-		PP_5390	0.73	+1.0
6,145,712	-				-0.5
6,145,712	-				+0.8