Strain Fitness in Pseudomonas putida KT2440 around PP_0397

Experiment: Rhamnogalacturonan - from potato (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0396 and PP_0397 are separated by 155 nucleotidesPP_0397 and PP_0398 are separated by 282 nucleotidesPP_0398 and PP_0399 are separated by 14 nucleotides PP_0396: PP_0396 - conserved protein of unknown function, at 481,089 to 482,360 _0396 PP_0397: PP_0397 - protein kinase, at 482,516 to 484,438 _0397 PP_0398: PP_0398 - Thiosulfate sulfurtransferase GlpE, at 484,721 to 485,053 _0398 PP_0399: PP_0399 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical, at 485,068 to 485,934 _0399 Position (kb) 482 483 484 485Strain fitness (log2 ratio) -1 0 1 2 3at 481.516 kb on + strand, within PP_0396at 481.516 kb on + strand, within PP_0396at 481.516 kb on + strand, within PP_0396at 481.516 kb on + strand, within PP_0396at 481.520 kb on + strand, within PP_0396at 481.521 kb on - strand, within PP_0396at 481.521 kb on - strand, within PP_0396at 481.537 kb on + strand, within PP_0396at 481.537 kb on + strand, within PP_0396at 481.538 kb on - strand, within PP_0396at 481.596 kb on + strand, within PP_0396at 481.597 kb on - strand, within PP_0396at 481.661 kb on - strand, within PP_0396at 481.661 kb on - strand, within PP_0396at 481.661 kb on - strand, within PP_0396at 481.661 kb on - strand, within PP_0396at 481.661 kb on - strand, within PP_0396at 481.700 kb on + strand, within PP_0396at 481.700 kb on + strand, within PP_0396at 481.700 kb on + strand, within PP_0396at 481.700 kb on + strand, within PP_0396at 481.701 kb on - strand, within PP_0396at 481.701 kb on - strand, within PP_0396at 481.701 kb on - strand, within PP_0396at 481.701 kb on - strand, within PP_0396at 481.701 kb on - strand, within PP_0396at 481.871 kb on + strand, within PP_0396at 481.872 kb on - strand, within PP_0396at 481.965 kb on + strand, within PP_0396at 482.201 kb on + strand, within PP_0396at 482.228 kb on - strand, within PP_0396at 482.273 kb on + strandat 482.274 kb on - strandat 482.347 kb on - strandat 482.347 kb on - strandat 482.349 kb on - strandat 482.353 kb on + strandat 482.353 kb on + strandat 482.354 kb on - strandat 482.504 kb on + strandat 482.505 kb on - strandat 482.518 kb on - strandat 482.578 kb on - strandat 482.722 kb on - strand, within PP_0397at 482.925 kb on + strand, within PP_0397at 482.925 kb on + strand, within PP_0397at 482.925 kb on + strand, within PP_0397at 482.925 kb on + strand, within PP_0397at 482.925 kb on + strand, within PP_0397at 482.926 kb on - strand, within PP_0397at 482.926 kb on - strand, within PP_0397at 482.934 kb on + strand, within PP_0397at 482.934 kb on + strand, within PP_0397at 482.934 kb on + strandat 482.934 kb on + strand, within PP_0397at 482.935 kb on - strand, within PP_0397at 482.935 kb on - strand, within PP_0397at 482.935 kb on - strand, within PP_0397at 482.935 kb on - strand, within PP_0397at 482.935 kb on - strand, within PP_0397at 482.968 kb on - strand, within PP_0397at 482.979 kb on + strand, within PP_0397at 482.980 kb on - strand, within PP_0397at 483.015 kb on + strand, within PP_0397at 483.016 kb on - strand, within PP_0397at 483.016 kb on - strand, within PP_0397at 483.016 kb on - strand, within PP_0397at 483.030 kb on + strand, within PP_0397at 483.030 kb on + strand, within PP_0397at 483.051 kb on + strand, within PP_0397at 483.052 kb on - strand, within PP_0397at 483.108 kb on + strand, within PP_0397at 483.108 kb on + strand, within PP_0397at 483.109 kb on - strand, within PP_0397at 483.109 kb on - strand, within PP_0397at 483.109 kb on - strand, within PP_0397at 483.109 kb on - strand, within PP_0397at 483.109 kb on - strand, within PP_0397at 483.109 kb on - strand, within PP_0397at 483.109 kb on - strand, within PP_0397at 483.234 kb on + strand, within PP_0397at 483.307 kb on - strand, within PP_0397at 483.310 kb on + strand, within PP_0397at 483.311 kb on - strand, within PP_0397at 483.373 kb on + strand, within PP_0397at 483.426 kb on + strand, within PP_0397at 483.427 kb on - strand, within PP_0397at 483.459 kb on + strand, within PP_0397at 483.459 kb on + strand, within PP_0397at 483.459 kb on + strand, within PP_0397at 483.477 kb on + strand, within PP_0397at 483.477 kb on + strand, within PP_0397at 483.477 kb on + strand, within PP_0397at 483.477 kb on + strand, within PP_0397at 483.478 kb on - strand, within PP_0397at 483.478 kb on - strand, within PP_0397at 483.478 kb on - strand, within PP_0397at 483.478 kb on - strand, within PP_0397at 483.478 kb on - strand, within PP_0397at 483.514 kb on + strand, within PP_0397at 483.565 kb on + strand, within PP_0397at 483.567 kb on + strand, within PP_0397at 483.600 kb on + strand, within PP_0397at 483.600 kb on + strand, within PP_0397at 483.600 kb on + strand, within PP_0397at 483.600 kb on + strand, within PP_0397at 483.601 kb on - strand, within PP_0397at 483.711 kb on + strand, within PP_0397at 483.711 kb on + strand, within PP_0397at 483.711 kb on + strand, within PP_0397at 483.711 kb on + strand, within PP_0397at 483.712 kb on - strand, within PP_0397at 483.715 kb on + strand, within PP_0397at 483.715 kb on + strand, within PP_0397at 483.715 kb on + strand, within PP_0397at 483.715 kb on + strand, within PP_0397at 483.715 kb on + strand, within PP_0397at 483.716 kb on - strand, within PP_0397at 483.716 kb on - strand, within PP_0397at 483.716 kb on - strand, within PP_0397at 483.716 kb on - strand, within PP_0397at 483.716 kb on - strand, within PP_0397at 483.716 kb on - strand, within PP_0397at 483.716 kb on - strand, within PP_0397at 483.716 kb on - strand, within PP_0397at 483.716 kb on - strand, within PP_0397at 483.716 kb on - strand, within PP_0397at 483.716 kb on - strand, within PP_0397at 483.718 kb on - strand, within PP_0397at 483.741 kb on + strand, within PP_0397at 483.839 kb on - strand, within PP_0397at 483.939 kb on + strand, within PP_0397at 484.041 kb on + strand, within PP_0397at 484.041 kb on + strand, within PP_0397at 484.120 kb on - strand, within PP_0397at 484.120 kb on - strand, within PP_0397at 484.167 kb on + strand, within PP_0397at 484.168 kb on - strand, within PP_0397at 484.235 kb on - strand, within PP_0397at 484.273 kb on + strandat 484.274 kb on - strandat 484.274 kb on - strandat 484.274 kb on - strandat 484.400 kb on - strandat 484.400 kb on - strandat 484.432 kb on + strandat 484.456 kb on + strandat 484.520 kb on + strandat 484.520 kb on + strandat 484.520 kb on + strandat 484.520 kb on + strandat 484.520 kb on + strandat 484.520 kb on + strandat 484.520 kb on + strandat 484.520 kb on + strandat 484.521 kb on - strandat 484.521 kb on - strandat 484.521 kb on - strandat 484.521 kb on - strandat 484.521 kb on - strandat 484.521 kb on - strandat 484.521 kb on - strandat 484.522 kb on + strandat 484.542 kb on - strandat 484.542 kb on - strandat 484.604 kb on - strandat 484.604 kb on - strandat 484.609 kb on + strandat 484.609 kb on + strandat 484.609 kb on + strandat 484.609 kb on + strandat 484.610 kb on - strandat 484.618 kb on - strandat 484.629 kb on - strandat 484.629 kb on - strandat 484.629 kb on - strandat 484.653 kb on - strandat 484.794 kb on + strand, within PP_0398at 484.817 kb on + strand, within PP_0398at 484.824 kb on + strand, within PP_0398at 484.825 kb on - strand, within PP_0398at 484.858 kb on - strand, within PP_0398at 485.060 kb on + strandat 485.060 kb on + strandat 485.060 kb on + strandat 485.060 kb on + strandat 485.060 kb on + strandat 485.061 kb on - strandat 485.061 kb on - strandat 485.061 kb on - strandat 485.061 kb on - strandat 485.061 kb on - strandat 485.088 kb on + strandat 485.088 kb on + strandat 485.089 kb on - strandat 485.089 kb on - strandat 485.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C)
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481,516 + PP_0396 0.34 +0.5
481,516 + PP_0396 0.34 -0.2
481,516 + PP_0396 0.34 +0.9
481,516 + PP_0396 0.34 +0.2
481,520 + PP_0396 0.34 +0.8
481,521 - PP_0396 0.34 +0.7
481,521 - PP_0396 0.34 +2.0
481,537 + PP_0396 0.35 +0.0
481,537 + PP_0396 0.35 +0.6
481,538 - PP_0396 0.35 +0.3
481,596 + PP_0396 0.40 +1.4
481,597 - PP_0396 0.40 +1.8
481,661 - PP_0396 0.45 +1.2
481,661 - PP_0396 0.45 +1.1
481,661 - PP_0396 0.45 +1.4
481,661 - PP_0396 0.45 +0.6
481,661 - PP_0396 0.45 +2.9
481,700 + PP_0396 0.48 +1.2
481,700 + PP_0396 0.48 +0.9
481,700 + PP_0396 0.48 +0.3
481,700 + PP_0396 0.48 +1.2
481,701 - PP_0396 0.48 -0.8
481,701 - PP_0396 0.48 -0.2
481,701 - PP_0396 0.48 +0.5
481,701 - PP_0396 0.48 +0.1
481,701 - PP_0396 0.48 +1.6
481,871 + PP_0396 0.61 -1.0
481,872 - PP_0396 0.62 +0.8
481,965 + PP_0396 0.69 +0.7
482,201 + PP_0396 0.87 +1.4
482,228 - PP_0396 0.90 +0.2
482,273 + +0.1
482,274 - +3.6
482,347 - +2.9
482,347 - +1.5
482,349 - +0.2
482,353 + +1.2
482,353 + +1.0
482,354 - +1.1
482,504 + +0.1
482,505 - -0.0
482,518 - -0.3
482,578 - +0.6
482,722 - PP_0397 0.11 -0.1
482,925 + PP_0397 0.21 +1.2
482,925 + PP_0397 0.21 -0.2
482,925 + PP_0397 0.21 +0.5
482,925 + PP_0397 0.21 +2.6
482,925 + PP_0397 0.21 +1.2
482,926 - PP_0397 0.21 +0.5
482,926 - PP_0397 0.21 +0.7
482,934 + PP_0397 0.22 +0.4
482,934 + PP_0397 0.22 +0.6
482,934 + +3.6
482,934 + PP_0397 0.22 +1.1
482,935 - PP_0397 0.22 +0.7
482,935 - PP_0397 0.22 +0.9
482,935 - PP_0397 0.22 +0.1
482,935 - PP_0397 0.22 +0.2
482,935 - PP_0397 0.22 +1.2
482,968 - PP_0397 0.24 +0.6
482,979 + PP_0397 0.24 +1.2
482,980 - PP_0397 0.24 +1.7
483,015 + PP_0397 0.26 -1.0
483,016 - PP_0397 0.26 -0.3
483,016 - PP_0397 0.26 +1.2
483,016 - PP_0397 0.26 +0.5
483,030 + PP_0397 0.27 +1.1
483,030 + PP_0397 0.27 +0.2
483,051 + PP_0397 0.28 -0.2
483,052 - PP_0397 0.28 -1.2
483,108 + PP_0397 0.31 +0.7
483,108 + PP_0397 0.31 +0.3
483,109 - PP_0397 0.31 +3.2
483,109 - PP_0397 0.31 +0.8
483,109 - PP_0397 0.31 +0.1
483,109 - PP_0397 0.31 -0.5
483,109 - PP_0397 0.31 +0.6
483,109 - PP_0397 0.31 +0.2
483,109 - PP_0397 0.31 +1.4
483,234 + PP_0397 0.37 +0.3
483,307 - PP_0397 0.41 +1.6
483,310 + PP_0397 0.41 +1.8
483,311 - PP_0397 0.41 +0.2
483,373 + PP_0397 0.45 +1.1
483,426 + PP_0397 0.47 +1.2
483,427 - PP_0397 0.47 +0.9
483,459 + PP_0397 0.49 +0.3
483,459 + PP_0397 0.49 +0.4
483,459 + PP_0397 0.49 +3.6
483,477 + PP_0397 0.50 -0.1
483,477 + PP_0397 0.50 -0.6
483,477 + PP_0397 0.50 +1.0
483,477 + PP_0397 0.50 +0.2
483,478 - PP_0397 0.50 -0.0
483,478 - PP_0397 0.50 +0.9
483,478 - PP_0397 0.50 +1.3
483,478 - PP_0397 0.50 +0.2
483,478 - PP_0397 0.50 +0.9
483,514 + PP_0397 0.52 +1.0
483,565 + PP_0397 0.55 +0.4
483,567 + PP_0397 0.55 +0.4
483,600 + PP_0397 0.56 +0.4
483,600 + PP_0397 0.56 +1.0
483,600 + PP_0397 0.56 +0.4
483,600 + PP_0397 0.56 +0.3
483,601 - PP_0397 0.56 +0.0
483,711 + PP_0397 0.62 +0.1
483,711 + PP_0397 0.62 +1.9
483,711 + PP_0397 0.62 +0.3
483,711 + PP_0397 0.62 -0.5
483,712 - PP_0397 0.62 +1.8
483,715 + PP_0397 0.62 +0.4
483,715 + PP_0397 0.62 -0.5
483,715 + PP_0397 0.62 +1.2
483,715 + PP_0397 0.62 +0.6
483,715 + PP_0397 0.62 -1.0
483,716 - PP_0397 0.62 -0.2
483,716 - PP_0397 0.62 +0.6
483,716 - PP_0397 0.62 +2.7
483,716 - PP_0397 0.62 +1.0
483,716 - PP_0397 0.62 +0.8
483,716 - PP_0397 0.62 -0.6
483,716 - PP_0397 0.62 +0.2
483,716 - PP_0397 0.62 +0.6
483,716 - PP_0397 0.62 -0.3
483,716 - PP_0397 0.62 +1.3
483,716 - PP_0397 0.62 +0.5
483,718 - PP_0397 0.63 -0.6
483,741 + PP_0397 0.64 +0.6
483,839 - PP_0397 0.69 +1.5
483,939 + PP_0397 0.74 +0.8
484,041 + PP_0397 0.79 +1.1
484,041 + PP_0397 0.79 +0.7
484,120 - PP_0397 0.83 +0.1
484,120 - PP_0397 0.83 -0.1
484,167 + PP_0397 0.86 -0.0
484,168 - PP_0397 0.86 +1.6
484,235 - PP_0397 0.89 +0.8
484,273 + -0.3
484,274 - +1.4
484,274 - +0.6
484,274 - +1.3
484,400 - +0.2
484,400 - +0.8
484,432 + +0.0
484,456 + -0.1
484,520 + +1.1
484,520 + +0.4
484,520 + +0.1
484,520 + +0.5
484,520 + +0.3
484,520 + +0.1
484,520 + +1.0
484,520 + +0.1
484,521 - +2.2
484,521 - +0.8
484,521 - +0.3
484,521 - -0.4
484,521 - +0.5
484,521 - +0.9
484,521 - -0.2
484,522 + +0.8
484,542 - +0.8
484,542 - +1.0
484,604 - +0.7
484,604 - +0.5
484,609 + +0.9
484,609 + +2.2
484,609 + +0.7
484,609 + +0.0
484,610 - +0.4
484,618 - +0.1
484,629 - +0.3
484,629 - +0.9
484,629 - -0.1
484,653 - +0.2
484,794 + PP_0398 0.22 -1.6
484,817 + PP_0398 0.29 -0.1
484,824 + PP_0398 0.31 -0.0
484,825 - PP_0398 0.31 +1.0
484,858 - PP_0398 0.41 +0.5
485,060 + +0.7
485,060 + +0.4
485,060 + +0.1
485,060 + +0.6
485,060 + +0.6
485,061 - -0.3
485,061 - -1.0
485,061 - +0.2
485,061 - +0.6
485,061 - +1.0
485,088 + -0.1
485,088 + -0.6
485,089 - +0.3
485,089 - -0.7
485,089 - -0.0

Or see this region's nucleotide sequence