Strain Fitness in Pseudomonas putida KT2440 around PP_4493

Experiment: Mucic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mucic (C)
5,104,155	-		PP_4492	0.32	-0.3
5,104,155	-		PP_4492	0.32	+0.0
5,104,240	+		PP_4492	0.39	-1.2
5,104,241	-		PP_4492	0.39	-0.1
5,104,388	+		PP_4492	0.51	+1.8
5,104,389	-		PP_4492	0.51	-0.0
5,104,389	-		PP_4492	0.51	+0.6
5,104,389	-		PP_4492	0.51	-0.3
5,104,421	+		PP_4492	0.54	-0.2
5,104,421	+		PP_4492	0.54	-0.6
5,104,422	-		PP_4492	0.54	-0.8
5,104,422	-		PP_4492	0.54	+0.6
5,104,492	+		PP_4492	0.60	+0.0
5,104,492	+		PP_4492	0.60	-0.3
5,104,492	+		PP_4492	0.60	-0.2
5,104,495	+		PP_4492	0.60	-0.1
5,104,495	+		PP_4492	0.60	-0.2
5,104,495	+		PP_4492	0.60	-0.6
5,104,495	+		PP_4492	0.60	+0.1
5,104,496	-		PP_4492	0.60	+0.4
5,104,496	-		PP_4492	0.60	+0.3
5,104,496	-		PP_4492	0.60	-0.2
5,104,496	-		PP_4492	0.60	+0.8
5,104,496	-		PP_4492	0.60	+0.5
5,104,496	-		PP_4492	0.60	+1.0
5,104,496	-		PP_4492	0.60	-0.2
5,104,496	-		PP_4492	0.60	+0.2
5,104,496	-		PP_4492	0.60	-0.5
5,104,496	-		PP_4492	0.60	-0.8
5,104,795	+		PP_4492	0.85	+1.8
5,104,796	-		PP_4492	0.85	+0.0
5,104,927	+				-0.4
5,104,927	+				+0.1
5,104,928	-				+0.1
5,104,928	-				-0.4
5,104,962	+				-0.8
5,104,962	+				-0.6
5,104,963	-				+0.1
5,104,963	-				+0.2
5,104,963	-				+1.3
5,104,963	-				-0.2
5,105,037	-				-0.3
5,105,104	+				-0.7
5,105,105	-				-1.2
5,105,105	-				+0.0
5,105,165	+				-1.4
5,105,235	+				-0.9
5,105,276	-				-0.0
5,105,276	-				+2.4
5,105,276	-				-1.0
5,105,276	-				-0.4
5,105,288	+				-0.2
5,105,289	-				-1.3
5,105,289	-				-1.0
5,105,289	-				-0.9
5,105,289	-				-2.5
5,105,637	+		PP_4493	0.18	-0.8
5,105,637	+		PP_4493	0.18	-1.3
5,105,637	+		PP_4493	0.18	-0.1
5,105,637	+		PP_4493	0.18	+0.2
5,105,947	+		PP_4493	0.28	-0.2
5,105,948	-		PP_4493	0.28	-0.6
5,105,948	-		PP_4493	0.28	-0.3
5,105,971	+		PP_4493	0.29	-0.3
5,105,972	-		PP_4493	0.29	-1.3
5,106,026	-		PP_4493	0.31	-0.6
5,106,037	+				+1.4
5,106,129	-		PP_4493	0.34	-0.7
5,106,136	+		PP_4493	0.35	-0.0
5,106,367	+		PP_4493	0.42	-0.5
5,106,367	+		PP_4493	0.42	+0.1
5,106,368	-		PP_4493	0.42	-1.7
5,106,368	-		PP_4493	0.42	+0.0
5,106,368	-		PP_4493	0.42	-0.8
5,106,368	-		PP_4493	0.42	-0.7
5,106,368	-		PP_4493	0.42	-0.9
5,106,368	-		PP_4493	0.42	-0.5
5,106,368	-		PP_4493	0.42	-0.8
5,106,373	+		PP_4493	0.42	-1.4
5,106,373	+		PP_4493	0.42	-1.5
5,106,373	+		PP_4493	0.42	+3.4
5,106,374	-		PP_4493	0.42	-0.6
5,106,440	+		PP_4493	0.45	-1.4
5,106,577	+		PP_4493	0.49	-0.9
5,106,592	+		PP_4493	0.50	-0.8
5,106,604	+		PP_4493	0.50	-0.8
5,106,604	+		PP_4493	0.50	-1.0
5,106,605	-		PP_4493	0.50	-0.6
5,106,779	-		PP_4493	0.56	-1.0
5,106,823	+		PP_4493	0.57	+0.0
5,106,823	+		PP_4493	0.57	-0.1
5,106,824	-		PP_4493	0.57	-1.5
5,106,824	-		PP_4493	0.57	+0.4
5,106,847	-		PP_4493	0.58	-1.9
5,106,920	+		PP_4493	0.61	-0.5
5,106,920	+		PP_4493	0.61	-0.5
5,106,921	-		PP_4493	0.61	+0.0
5,106,921	-		PP_4493	0.61	-0.7
5,106,929	+		PP_4493	0.61	-0.7
5,106,929	+		PP_4493	0.61	-0.5
5,106,929	+		PP_4493	0.61	-0.5
5,106,930	-		PP_4493	0.61	-0.7
5,106,930	-		PP_4493	0.61	-1.0
5,106,930	-		PP_4493	0.61	-1.5
5,106,930	-		PP_4493	0.61	-2.1
5,106,932	-		PP_4493	0.61	-0.8
5,107,243	+		PP_4493	0.71	+0.3
5,107,267	+		PP_4493	0.72	-1.8
5,107,267	+		PP_4493	0.72	-0.8
5,107,267	+		PP_4493	0.72	-1.3
5,107,267	+		PP_4493	0.72	-1.8
5,107,310	-		PP_4493	0.73	-1.5
5,107,338	+		PP_4493	0.74	-0.9
5,107,339	-		PP_4493	0.74	-1.7
5,107,339	-		PP_4493	0.74	-1.7
5,107,475	-		PP_4493	0.79	+0.9
5,107,606	+		PP_4493	0.83	-1.1
5,107,607	-		PP_4493	0.83	-0.2
5,107,607	-		PP_4493	0.83	+0.4
5,107,821	-				-0.2
5,107,972	+				-0.9
5,107,996	-				+0.7
5,108,012	-				-1.5
5,108,131	-				+0.4
5,108,137	+				-2.4
5,108,150	-				+0.2
5,108,191	+				+0.2
5,108,192	-				+0.8
5,108,192	-				-0.1
5,108,194	-				-0.7
5,108,260	-				+1.1
5,108,337	-				+2.4
5,108,337	-				-1.0
5,108,337	-				+0.6
5,108,391	+		PP_4494	0.14	-0.2
5,108,391	+		PP_4494	0.14	-0.5
5,108,392	-		PP_4494	0.14	-1.0
5,108,392	-		PP_4494	0.14	+0.6
5,108,448	+		PP_4494	0.21	-0.4
5,108,449	-		PP_4494	0.21	-0.1
5,108,449	-		PP_4494	0.21	-0.4
5,108,475	-		PP_4494	0.24	+0.2
5,108,537	+		PP_4494	0.31	-0.2
5,108,538	-		PP_4494	0.31	-1.1
5,108,550	+		PP_4494	0.32	-0.2
5,108,591	-		PP_4494	0.37	+0.4
5,108,591	-		PP_4494	0.37	-0.3
5,108,621	+		PP_4494	0.40	+0.2
5,108,621	+		PP_4494	0.40	-0.8
5,108,962	-		PP_4494	0.79	+0.2
5,108,997	+		PP_4494	0.83	+0.1
5,108,998	-		PP_4494	0.83	+0.5
5,108,998	-		PP_4494	0.83	-0.9
5,109,032	+		PP_4494	0.87	-0.0
5,109,032	+		PP_4494	0.87	+0.1
5,109,032	+		PP_4494	0.87	-0.3
5,109,032	+		PP_4494	0.87	-0.3
5,109,032	+		PP_4494	0.87	+0.3
5,109,032	+		PP_4494	0.87	-0.5
5,109,032	+		PP_4494	0.87	+0.0
5,109,032	+		PP_4494	0.87	-0.8
5,109,033	-		PP_4494	0.87	+0.2
5,109,033	-		PP_4494	0.87	+0.7
5,109,033	-		PP_4494	0.87	+0.8
5,109,068	+				-0.4
5,109,068	+				-1.0
5,109,068	+				+2.4
5,109,071	+				-0.0
5,109,071	+				+0.5
5,109,072	-				-0.6
5,109,080	+				-0.2
5,109,081	-				-0.3