Experiment: Mucic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3985 and PP_3986 are separated by 18 nucleotides PP_3986 and PP_3987 are separated by 75 nucleotides PP_3987 and PP_5651 are separated by 51 nucleotides
PP_3985: PP_3985 - transposase, at 4,493,708 to 4,495,240
_3985
PP_3986: PP_3986 - transposase, at 4,495,259 to 4,495,615
_3986
PP_3987: PP_3987 - Site-specific recombinase, phage integrase family, at 4,495,691 to 4,496,650
_3987
PP_5651: PP_5651 - conserved protein of unknown function, at 4,496,702 to 4,497,949
_5651
Position (kb) 4495
4496
4497 Strain fitness (log2 ratio) -1
0
1
2
3 at 4495.668 kb on + strand at 4495.701 kb on + strand at 4495.820 kb on + strand, within PP_3987 at 4495.938 kb on + strand, within PP_3987 at 4495.939 kb on - strand, within PP_3987 at 4496.002 kb on - strand, within PP_3987 at 4496.012 kb on + strand, within PP_3987 at 4496.015 kb on - strand, within PP_3987 at 4496.015 kb on - strand, within PP_3987 at 4496.099 kb on + strand, within PP_3987 at 4496.174 kb on + strand, within PP_3987 at 4496.234 kb on - strand, within PP_3987 at 4496.234 kb on - strand, within PP_3987 at 4496.237 kb on + strand, within PP_3987 at 4496.237 kb on + strand, within PP_3987 at 4496.266 kb on + strand, within PP_3987 at 4496.266 kb on + strand, within PP_3987 at 4496.267 kb on - strand, within PP_3987 at 4496.267 kb on - strand, within PP_3987 at 4496.325 kb on + strand, within PP_3987 at 4496.325 kb on + strand, within PP_3987 at 4496.325 kb on + strand, within PP_3987 at 4496.376 kb on + strand, within PP_3987 at 4496.376 kb on + strand, within PP_3987 at 4496.376 kb on + strand, within PP_3987 at 4496.487 kb on + strand, within PP_3987 at 4496.487 kb on + strand, within PP_3987 at 4496.523 kb on + strand, within PP_3987 at 4496.524 kb on - strand, within PP_3987 at 4496.575 kb on - strand at 4496.610 kb on + strand at 4496.611 kb on - strand at 4496.611 kb on - strand at 4496.612 kb on + strand at 4496.613 kb on - strand at 4496.613 kb on - strand at 4496.614 kb on + strand at 4496.615 kb on - strand at 4496.634 kb on + strand at 4496.704 kb on - strand at 4496.712 kb on - strand at 4496.731 kb on + strand at 4496.761 kb on - strand at 4496.792 kb on + strand at 4496.793 kb on - strand at 4496.860 kb on + strand, within PP_5651 at 4496.903 kb on - strand, within PP_5651 at 4496.962 kb on + strand, within PP_5651 at 4496.962 kb on + strand, within PP_5651 at 4497.062 kb on - strand, within PP_5651 at 4497.082 kb on + strand, within PP_5651 at 4497.102 kb on - strand, within PP_5651 at 4497.145 kb on + strand, within PP_5651 at 4497.327 kb on - strand, within PP_5651 at 4497.400 kb on + strand, within PP_5651 at 4497.455 kb on + strand, within PP_5651 at 4497.456 kb on - strand, within PP_5651 at 4497.508 kb on + strand, within PP_5651
Per-strain Table
Position Strand Gene LocusTag Fraction Mucic (C) remove 4,495,668 + -0.5 4,495,701 + +0.2 4,495,820 + PP_3987 0.13 +0.4 4,495,938 + PP_3987 0.26 +0.3 4,495,939 - PP_3987 0.26 +0.3 4,496,002 - PP_3987 0.32 +0.4 4,496,012 + PP_3987 0.33 +0.2 4,496,015 - PP_3987 0.34 +2.6 4,496,015 - PP_3987 0.34 -0.5 4,496,099 + PP_3987 0.42 +0.4 4,496,174 + PP_3987 0.50 +0.5 4,496,234 - PP_3987 0.57 -0.3 4,496,234 - PP_3987 0.57 +1.4 4,496,237 + PP_3987 0.57 -0.1 4,496,237 + PP_3987 0.57 -0.2 4,496,266 + PP_3987 0.60 +0.1 4,496,266 + PP_3987 0.60 -0.5 4,496,267 - PP_3987 0.60 +0.3 4,496,267 - PP_3987 0.60 +0.2 4,496,325 + PP_3987 0.66 +0.5 4,496,325 + PP_3987 0.66 +0.7 4,496,325 + PP_3987 0.66 +0.0 4,496,376 + PP_3987 0.71 +1.0 4,496,376 + PP_3987 0.71 -0.0 4,496,376 + PP_3987 0.71 +0.3 4,496,487 + PP_3987 0.83 +0.3 4,496,487 + PP_3987 0.83 +0.2 4,496,523 + PP_3987 0.87 +0.4 4,496,524 - PP_3987 0.87 +0.2 4,496,575 - +0.1 4,496,610 + +0.2 4,496,611 - -0.1 4,496,611 - +0.4 4,496,612 + -0.7 4,496,613 - -1.3 4,496,613 - -0.1 4,496,614 + +0.2 4,496,615 - +0.3 4,496,634 + +0.2 4,496,704 - -0.3 4,496,712 - -1.5 4,496,731 + +0.4 4,496,761 - -0.1 4,496,792 + +0.1 4,496,793 - +0.6 4,496,860 + PP_5651 0.13 -0.1 4,496,903 - PP_5651 0.16 +0.9 4,496,962 + PP_5651 0.21 -0.2 4,496,962 + PP_5651 0.21 +3.3 4,497,062 - PP_5651 0.29 +0.7 4,497,082 + PP_5651 0.30 +0.1 4,497,102 - PP_5651 0.32 -0.6 4,497,145 + PP_5651 0.35 +0.0 4,497,327 - PP_5651 0.50 -0.6 4,497,400 + PP_5651 0.56 -0.0 4,497,455 + PP_5651 0.60 +0.0 4,497,456 - PP_5651 0.60 +0.3 4,497,508 + PP_5651 0.65 -0.5
Or see this region's nucleotide sequence