Experiment: D-Glucuronic gamma lactone (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5203 and PP_5204 are separated by 19 nucleotides PP_5204 and PP_5205 are separated by 34 nucleotides PP_5205 and PP_5206 are separated by 95 nucleotides PP_5206 and PP_5207 overlap by 4 nucleotides
PP_5203: PP_5203 - 5-formyltetrahydrofolate cyclo-ligase, at 5,934,980 to 5,935,588
_5203
PP_5204: PP_5204 - conserved protein of unknown function, at 5,935,608 to 5,935,904
_5204
PP_5205: PP_5205 - conserved protein of unknown function, at 5,935,939 to 5,936,388
_5205
PP_5206: PP_5206 - putative translation-related protein, at 5,936,484 to 5,937,443
_5206
PP_5207: PP_5207 - ribosome-associated ATPase, at 5,937,440 to 5,940,160
_5207
Position (kb) 5936
5937
5938 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5935.572 kb on - strand at 5935.607 kb on - strand at 5935.645 kb on + strand, within PP_5204 at 5935.646 kb on - strand, within PP_5204 at 5935.646 kb on - strand, within PP_5204 at 5935.691 kb on + strand, within PP_5204 at 5935.749 kb on - strand, within PP_5204 at 5935.791 kb on + strand, within PP_5204 at 5935.791 kb on + strand, within PP_5204 at 5935.831 kb on - strand, within PP_5204 at 5935.910 kb on + strand at 5935.911 kb on - strand at 5936.032 kb on + strand, within PP_5205 at 5936.032 kb on + strand, within PP_5205 at 5936.032 kb on + strand, within PP_5205 at 5936.032 kb on + strand, within PP_5205 at 5936.033 kb on - strand, within PP_5205 at 5936.033 kb on - strand, within PP_5205 at 5936.033 kb on - strand, within PP_5205 at 5936.033 kb on - strand, within PP_5205 at 5936.086 kb on + strand, within PP_5205 at 5936.087 kb on - strand, within PP_5205 at 5936.183 kb on - strand, within PP_5205 at 5936.243 kb on + strand, within PP_5205 at 5936.243 kb on + strand, within PP_5205 at 5936.243 kb on + strand, within PP_5205 at 5936.243 kb on + strand, within PP_5205 at 5936.244 kb on - strand, within PP_5205 at 5936.244 kb on - strand, within PP_5205 at 5936.391 kb on - strand at 5936.398 kb on + strand at 5936.399 kb on - strand at 5936.501 kb on + strand at 5936.557 kb on - strand at 5936.707 kb on + strand, within PP_5206 at 5936.787 kb on + strand, within PP_5206 at 5936.944 kb on + strand, within PP_5206 at 5936.945 kb on - strand, within PP_5206 at 5937.147 kb on + strand, within PP_5206 at 5937.148 kb on - strand, within PP_5206 at 5937.148 kb on - strand, within PP_5206 at 5937.148 kb on - strand, within PP_5206 at 5937.148 kb on - strand, within PP_5206 at 5937.148 kb on - strand, within PP_5206 at 5937.160 kb on - strand, within PP_5206 at 5937.193 kb on + strand, within PP_5206 at 5937.193 kb on + strand, within PP_5206 at 5937.193 kb on + strand, within PP_5206 at 5937.399 kb on + strand at 5937.400 kb on - strand at 5937.403 kb on + strand at 5937.403 kb on + strand at 5937.403 kb on + strand at 5937.403 kb on + strand at 5937.403 kb on + strand at 5937.403 kb on + strand at 5937.404 kb on - strand at 5937.404 kb on - strand at 5937.404 kb on - strand at 5937.496 kb on - strand at 5937.511 kb on - strand at 5937.610 kb on - strand at 5937.925 kb on + strand, within PP_5207 at 5938.040 kb on + strand, within PP_5207 at 5938.041 kb on - strand, within PP_5207 at 5938.162 kb on + strand, within PP_5207 at 5938.169 kb on + strand, within PP_5207 at 5938.169 kb on + strand, within PP_5207
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic gamma lactone (C) remove 5,935,572 - -1.0 5,935,607 - +0.6 5,935,645 + PP_5204 0.12 -0.3 5,935,646 - PP_5204 0.13 -0.0 5,935,646 - PP_5204 0.13 +0.6 5,935,691 + PP_5204 0.28 +2.3 5,935,749 - PP_5204 0.47 +1.5 5,935,791 + PP_5204 0.62 -0.1 5,935,791 + PP_5204 0.62 +0.2 5,935,831 - PP_5204 0.75 +1.1 5,935,910 + +0.9 5,935,911 - -0.6 5,936,032 + PP_5205 0.21 +0.5 5,936,032 + PP_5205 0.21 -0.9 5,936,032 + PP_5205 0.21 +0.1 5,936,032 + PP_5205 0.21 +0.3 5,936,033 - PP_5205 0.21 +2.5 5,936,033 - PP_5205 0.21 -1.8 5,936,033 - PP_5205 0.21 +0.6 5,936,033 - PP_5205 0.21 +0.0 5,936,086 + PP_5205 0.33 +1.7 5,936,087 - PP_5205 0.33 +0.1 5,936,183 - PP_5205 0.54 -0.0 5,936,243 + PP_5205 0.68 +0.2 5,936,243 + PP_5205 0.68 +1.7 5,936,243 + PP_5205 0.68 +0.3 5,936,243 + PP_5205 0.68 +1.2 5,936,244 - PP_5205 0.68 -0.5 5,936,244 - PP_5205 0.68 -0.0 5,936,391 - +0.4 5,936,398 + +1.7 5,936,399 - +0.1 5,936,501 + -0.5 5,936,557 - -0.3 5,936,707 + PP_5206 0.23 +0.4 5,936,787 + PP_5206 0.32 +1.1 5,936,944 + PP_5206 0.48 +0.1 5,936,945 - PP_5206 0.48 +0.2 5,937,147 + PP_5206 0.69 -0.1 5,937,148 - PP_5206 0.69 -0.0 5,937,148 - PP_5206 0.69 +0.5 5,937,148 - PP_5206 0.69 +1.4 5,937,148 - PP_5206 0.69 -0.0 5,937,148 - PP_5206 0.69 +0.2 5,937,160 - PP_5206 0.70 +0.6 5,937,193 + PP_5206 0.74 +1.8 5,937,193 + PP_5206 0.74 +0.5 5,937,193 + PP_5206 0.74 +0.9 5,937,399 + +1.0 5,937,400 - -1.3 5,937,403 + -1.5 5,937,403 + -0.2 5,937,403 + +0.1 5,937,403 + +0.9 5,937,403 + +1.2 5,937,403 + +0.2 5,937,404 - +0.2 5,937,404 - -0.4 5,937,404 - -0.1 5,937,496 - -1.2 5,937,511 - -1.2 5,937,610 - +0.2 5,937,925 + PP_5207 0.18 -1.6 5,938,040 + PP_5207 0.22 -0.1 5,938,041 - PP_5207 0.22 -0.0 5,938,162 + PP_5207 0.27 +1.1 5,938,169 + PP_5207 0.27 -0.5 5,938,169 + PP_5207 0.27 +2.5
Or see this region's nucleotide sequence