Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1011 and PP_1012 are separated by 78 nucleotides PP_1012 and PP_1013 overlap by 20 nucleotides PP_1013 and PP_1014 are separated by 215 nucleotides
PP_1011: PP_1011 - glucokinase, at 1,153,099 to 1,154,058
_1011
PP_1012: PP_1012 - DNA-binding response regulator, at 1,154,137 to 1,154,862
_1012
PP_1013: PP_1013 - Sensor histidine kinase, at 1,154,843 to 1,156,297
_1013
PP_1014: PP_1014 - aldose-ketose isomerase, at 1,156,513 to 1,157,763
_1014
Position (kb)
1154
1155
1156
1157 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1153.873 kb on + strand, within PP_1011 at 1153.873 kb on + strand, within PP_1011 at 1153.873 kb on + strand, within PP_1011 at 1153.874 kb on - strand, within PP_1011 at 1153.874 kb on - strand, within PP_1011 at 1153.874 kb on - strand, within PP_1011 at 1153.874 kb on - strand, within PP_1011 at 1153.874 kb on - strand, within PP_1011 at 1153.875 kb on + strand, within PP_1011 at 1153.876 kb on - strand, within PP_1011 at 1153.876 kb on - strand, within PP_1011 at 1153.876 kb on - strand, within PP_1011 at 1153.956 kb on + strand, within PP_1011 at 1153.956 kb on + strand, within PP_1011 at 1153.956 kb on + strand, within PP_1011 at 1153.966 kb on + strand at 1154.113 kb on + strand at 1154.113 kb on + strand at 1154.113 kb on + strand at 1154.113 kb on + strand at 1154.114 kb on - strand at 1154.207 kb on - strand at 1154.207 kb on - strand at 1154.349 kb on - strand, within PP_1012 at 1154.376 kb on - strand, within PP_1012 at 1154.376 kb on - strand, within PP_1012 at 1154.379 kb on + strand, within PP_1012 at 1154.379 kb on + strand, within PP_1012 at 1154.379 kb on + strand, within PP_1012 at 1154.379 kb on + strand, within PP_1012 at 1154.379 kb on + strand, within PP_1012 at 1154.380 kb on - strand, within PP_1012 at 1154.380 kb on - strand, within PP_1012 at 1154.450 kb on - strand, within PP_1012 at 1154.827 kb on + strand at 1154.828 kb on - strand at 1154.956 kb on + strand at 1154.956 kb on + strand at 1154.956 kb on + strand at 1154.957 kb on - strand at 1154.957 kb on - strand at 1154.957 kb on - strand at 1154.957 kb on - strand at 1154.957 kb on - strand at 1155.048 kb on - strand, within PP_1013 at 1155.330 kb on - strand, within PP_1013 at 1155.364 kb on - strand, within PP_1013 at 1155.404 kb on + strand, within PP_1013 at 1155.404 kb on + strand, within PP_1013 at 1155.405 kb on - strand, within PP_1013 at 1155.405 kb on - strand, within PP_1013 at 1155.431 kb on + strand, within PP_1013 at 1155.668 kb on - strand, within PP_1013 at 1155.677 kb on + strand, within PP_1013 at 1155.890 kb on - strand, within PP_1013 at 1155.921 kb on - strand, within PP_1013 at 1155.969 kb on - strand, within PP_1013 at 1156.032 kb on - strand, within PP_1013 at 1156.176 kb on - strand at 1156.214 kb on - strand at 1156.275 kb on - strand at 1156.289 kb on - strand at 1156.345 kb on - strand at 1156.372 kb on - strand at 1156.531 kb on + strand at 1156.531 kb on + strand at 1156.531 kb on + strand at 1156.532 kb on - strand at 1156.756 kb on + strand, within PP_1014 at 1156.756 kb on + strand, within PP_1014 at 1156.862 kb on - strand, within PP_1014 at 1156.862 kb on - strand, within PP_1014 at 1156.926 kb on + strand, within PP_1014 at 1156.926 kb on + strand, within PP_1014 at 1156.926 kb on + strand, within PP_1014 at 1156.927 kb on - strand, within PP_1014 at 1156.927 kb on - strand, within PP_1014 at 1156.927 kb on - strand, within PP_1014 at 1156.927 kb on - strand, within PP_1014 at 1156.927 kb on - strand, within PP_1014 at 1157.148 kb on + strand, within PP_1014 at 1157.218 kb on + strand, within PP_1014 at 1157.218 kb on + strand, within PP_1014 at 1157.219 kb on - strand, within PP_1014 at 1157.219 kb on - strand, within PP_1014 at 1157.254 kb on + strand, within PP_1014 at 1157.255 kb on - strand, within PP_1014 at 1157.262 kb on + strand, within PP_1014 at 1157.262 kb on + strand, within PP_1014 at 1157.263 kb on + strand, within PP_1014 at 1157.263 kb on - strand, within PP_1014 at 1157.263 kb on - strand, within PP_1014
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 1,153,873 + PP_1011 0.81 -0.4 1,153,873 + PP_1011 0.81 -0.2 1,153,873 + PP_1011 0.81 +0.4 1,153,874 - PP_1011 0.81 -0.4 1,153,874 - PP_1011 0.81 -0.0 1,153,874 - PP_1011 0.81 -0.1 1,153,874 - PP_1011 0.81 +2.5 1,153,874 - PP_1011 0.81 +0.9 1,153,875 + PP_1011 0.81 -0.7 1,153,876 - PP_1011 0.81 +0.6 1,153,876 - PP_1011 0.81 -0.8 1,153,876 - PP_1011 0.81 -0.5 1,153,956 + PP_1011 0.89 -1.7 1,153,956 + PP_1011 0.89 -0.9 1,153,956 + PP_1011 0.89 -0.7 1,153,966 + +0.0 1,154,113 + -0.3 1,154,113 + -0.4 1,154,113 + +0.7 1,154,113 + -0.1 1,154,114 - -1.4 1,154,207 - -0.2 1,154,207 - +2.5 1,154,349 - PP_1012 0.29 +0.4 1,154,376 - PP_1012 0.33 -0.8 1,154,376 - PP_1012 0.33 -0.3 1,154,379 + PP_1012 0.33 -0.4 1,154,379 + PP_1012 0.33 -0.5 1,154,379 + PP_1012 0.33 -1.8 1,154,379 + PP_1012 0.33 +0.5 1,154,379 + PP_1012 0.33 -0.5 1,154,380 - PP_1012 0.33 -0.3 1,154,380 - PP_1012 0.33 +1.7 1,154,450 - PP_1012 0.43 -1.6 1,154,827 + -1.6 1,154,828 - -0.2 1,154,956 + +0.2 1,154,956 + -2.2 1,154,956 + -2.0 1,154,957 - -0.6 1,154,957 - -2.0 1,154,957 - -3.1 1,154,957 - -1.2 1,154,957 - -0.9 1,155,048 - PP_1013 0.14 -0.8 1,155,330 - PP_1013 0.33 -2.1 1,155,364 - PP_1013 0.36 -3.1 1,155,404 + PP_1013 0.39 -0.4 1,155,404 + PP_1013 0.39 -0.5 1,155,405 - PP_1013 0.39 -2.8 1,155,405 - PP_1013 0.39 -1.3 1,155,431 + PP_1013 0.40 -2.2 1,155,668 - PP_1013 0.57 -1.8 1,155,677 + PP_1013 0.57 -1.9 1,155,890 - PP_1013 0.72 -1.8 1,155,921 - PP_1013 0.74 -1.4 1,155,969 - PP_1013 0.77 -0.2 1,156,032 - PP_1013 0.82 -2.6 1,156,176 - -0.5 1,156,214 - -0.7 1,156,275 - -2.4 1,156,289 - -1.2 1,156,345 - -1.3 1,156,372 - -0.7 1,156,531 + +0.8 1,156,531 + -1.6 1,156,531 + +2.5 1,156,532 - -2.1 1,156,756 + PP_1014 0.19 -0.0 1,156,756 + PP_1014 0.19 -0.7 1,156,862 - PP_1014 0.28 -1.7 1,156,862 - PP_1014 0.28 -1.0 1,156,926 + PP_1014 0.33 +0.6 1,156,926 + PP_1014 0.33 -1.3 1,156,926 + PP_1014 0.33 -0.9 1,156,927 - PP_1014 0.33 -1.1 1,156,927 - PP_1014 0.33 -0.6 1,156,927 - PP_1014 0.33 +0.2 1,156,927 - PP_1014 0.33 -0.1 1,156,927 - PP_1014 0.33 +0.5 1,157,148 + PP_1014 0.51 +0.0 1,157,218 + PP_1014 0.56 +0.2 1,157,218 + PP_1014 0.56 +1.4 1,157,219 - PP_1014 0.56 +2.5 1,157,219 - PP_1014 0.56 -0.0 1,157,254 + PP_1014 0.59 +0.4 1,157,255 - PP_1014 0.59 -0.4 1,157,262 + PP_1014 0.60 -0.5 1,157,262 + PP_1014 0.60 -0.9 1,157,263 + PP_1014 0.60 +0.9 1,157,263 - PP_1014 0.60 -1.2 1,157,263 - PP_1014 0.60 -0.2
Or see this region's nucleotide sequence