Strain Fitness in Pseudomonas putida KT2440 around PP_0395

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0394 and PP_0395 are separated by 55 nucleotidesPP_0395 and PP_0396 overlap by 4 nucleotides PP_0394: PP_0394 - tRNA nucleotidyltransferase - 2',3'-cyclic phosphodiesterase - 2' nucleotidase and phosphatase, at 478,362 to 479,468 _0394 PP_0395: PP_0395 - putative type IV piliation protein, at 479,524 to 481,092 _0395 PP_0396: PP_0396 - conserved protein of unknown function, at 481,089 to 482,360 _0396 Position (kb) 479 480 481 482Strain fitness (log2 ratio) -2 -1 0 1 2at 479.482 kb on + strandat 479.561 kb on + strandat 479.562 kb on - strandat 479.577 kb on + strandat 479.577 kb on + strandat 479.578 kb on - strandat 479.607 kb on + strandat 479.608 kb on - strandat 479.677 kb on + strandat 479.677 kb on + strandat 479.678 kb on - strandat 479.678 kb on - strandat 479.805 kb on - strand, within PP_0395at 479.991 kb on + strand, within PP_0395at 479.991 kb on + strand, within PP_0395at 479.992 kb on - strand, within PP_0395at 479.992 kb on - strand, within PP_0395at 480.078 kb on - strand, within PP_0395at 480.116 kb on + strand, within PP_0395at 480.116 kb on + strand, within PP_0395at 480.117 kb on - strand, within PP_0395at 480.119 kb on + strand, within PP_0395at 480.209 kb on + strand, within PP_0395at 480.209 kb on + strand, within PP_0395at 480.230 kb on + strand, within PP_0395at 480.285 kb on - strand, within PP_0395at 480.291 kb on - strand, within PP_0395at 480.291 kb on - strand, within PP_0395at 480.291 kb on - strand, within PP_0395at 480.319 kb on + strand, within PP_0395at 480.319 kb on + strandat 480.319 kb on + strand, within PP_0395at 480.320 kb on - strand, within PP_0395at 480.320 kb on - strand, within PP_0395at 480.320 kb on - strand, within PP_0395at 480.369 kb on - strand, within PP_0395at 480.369 kb on - strand, within PP_0395at 480.525 kb on + strand, within PP_0395at 480.526 kb on - strand, within PP_0395at 480.526 kb on - strand, within PP_0395at 480.526 kb on - strand, within PP_0395at 480.542 kb on + strand, within PP_0395at 480.543 kb on - strand, within PP_0395at 480.543 kb on - strand, within PP_0395at 480.543 kb on - strand, within PP_0395at 480.557 kb on + strand, within PP_0395at 480.557 kb on + strand, within PP_0395at 480.557 kb on + strand, within PP_0395at 480.558 kb on - strand, within PP_0395at 480.558 kb on - strand, within PP_0395at 480.558 kb on - strand, within PP_0395at 480.558 kb on - strand, within PP_0395at 480.635 kb on + strand, within PP_0395at 480.636 kb on - strand, within PP_0395at 480.636 kb on - strand, within PP_0395at 480.636 kb on - strand, within PP_0395at 480.698 kb on + strand, within PP_0395at 480.698 kb on + strand, within PP_0395at 480.699 kb on - strand, within PP_0395at 480.699 kb on - strand, within PP_0395at 480.720 kb on + strand, within PP_0395at 480.728 kb on + strand, within PP_0395at 480.728 kb on + strand, within PP_0395at 480.728 kb on + strand, within PP_0395at 480.793 kb on - strand, within PP_0395at 480.793 kb on - strand, within PP_0395at 480.793 kb on - strand, within PP_0395at 480.793 kb on - strand, within PP_0395at 480.793 kb on - strand, within PP_0395at 480.821 kb on + strand, within PP_0395at 480.848 kb on + strand, within PP_0395at 480.848 kb on + strand, within PP_0395at 480.849 kb on - strand, within PP_0395at 480.881 kb on + strand, within PP_0395at 480.923 kb on + strand, within PP_0395at 480.924 kb on - strand, within PP_0395at 480.924 kb on - strand, within PP_0395at 481.020 kb on - strandat 481.020 kb on - strandat 481.020 kb on - strandat 481.098 kb on + strandat 481.136 kb on + strandat 481.137 kb on - strandat 481.137 kb on - strandat 481.201 kb on + strandat 481.201 kb on + strandat 481.202 kb on - strandat 481.246 kb on + strand, within PP_0396at 481.246 kb on + strand, within PP_0396at 481.246 kb on + strand, within PP_0396at 481.246 kb on + strand, within PP_0396at 481.247 kb on - strand, within PP_0396at 481.252 kb on + strand, within PP_0396at 481.252 kb on + strand, within PP_0396at 481.252 kb on + strand, within PP_0396at 481.252 kb on + strand, within PP_0396at 481.253 kb on - strand, within PP_0396at 481.253 kb on - strand, within PP_0396at 481.253 kb on - strand, within PP_0396at 481.253 kb on - strand, within PP_0396at 481.255 kb on + strand, within PP_0396at 481.255 kb on + strand, within PP_0396at 481.255 kb on + strand, within PP_0396at 481.255 kb on + strand, within PP_0396at 481.256 kb on - strand, within PP_0396at 481.256 kb on - strand, within PP_0396at 481.256 kb on - strand, within PP_0396at 481.348 kb on + strand, within PP_0396at 481.348 kb on + strand, within PP_0396at 481.348 kb on + strand, within PP_0396at 481.349 kb on - strand, within PP_0396at 481.349 kb on - strand, within PP_0396at 481.349 kb on - strandat 481.349 kb on - strand, within PP_0396at 481.349 kb on - strand, within PP_0396at 481.349 kb on - strand, within PP_0396at 481.349 kb on - strand, within PP_0396at 481.349 kb on - strand, within PP_0396at 481.404 kb on + strand, within PP_0396at 481.405 kb on - strand, within PP_0396at 481.516 kb on + strand, within PP_0396at 481.516 kb on + strand, within PP_0396at 481.516 kb on + strand, within PP_0396at 481.516 kb on + strand, within PP_0396at 481.520 kb on + strand, within PP_0396at 481.521 kb on - strand, within PP_0396at 481.521 kb on - strand, within PP_0396at 481.537 kb on + strand, within PP_0396at 481.537 kb on + strand, within PP_0396at 481.538 kb on - strand, within PP_0396at 481.596 kb on + strand, within PP_0396at 481.597 kb on - strand, within PP_0396at 481.661 kb on - strand, within PP_0396at 481.661 kb on - strand, within PP_0396at 481.661 kb on - strand, within PP_0396at 481.661 kb on - strand, within PP_0396at 481.661 kb on - strand, within PP_0396at 481.700 kb on + strand, within PP_0396at 481.700 kb on + strand, within PP_0396at 481.700 kb on + strand, within PP_0396at 481.700 kb on + strand, within PP_0396at 481.701 kb on - strand, within PP_0396at 481.701 kb on - strand, within PP_0396at 481.701 kb on - strand, within PP_0396at 481.701 kb on - strand, within PP_0396at 481.701 kb on - strand, within PP_0396at 481.871 kb on + strand, within PP_0396at 481.872 kb on - strand, within PP_0396at 481.965 kb on + strand, within PP_0396

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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479,482 + -0.1
479,561 + +0.6
479,562 - -0.1
479,577 + -0.6
479,577 + +0.5
479,578 - -1.9
479,607 + +0.3
479,608 - -0.3
479,677 + +0.1
479,677 + +0.3
479,678 - +0.2
479,678 - -0.9
479,805 - PP_0395 0.18 +2.0
479,991 + PP_0395 0.30 +0.8
479,991 + PP_0395 0.30 -0.6
479,992 - PP_0395 0.30 +0.0
479,992 - PP_0395 0.30 +0.6
480,078 - PP_0395 0.35 +0.8
480,116 + PP_0395 0.38 +0.8
480,116 + PP_0395 0.38 +1.2
480,117 - PP_0395 0.38 +1.3
480,119 + PP_0395 0.38 +0.2
480,209 + PP_0395 0.44 +0.8
480,209 + PP_0395 0.44 -0.2
480,230 + PP_0395 0.45 +1.8
480,285 - PP_0395 0.49 +0.3
480,291 - PP_0395 0.49 +0.6
480,291 - PP_0395 0.49 +0.4
480,291 - PP_0395 0.49 +0.2
480,319 + PP_0395 0.51 +1.0
480,319 + +2.6
480,319 + PP_0395 0.51 -1.7
480,320 - PP_0395 0.51 +1.0
480,320 - PP_0395 0.51 +1.3
480,320 - PP_0395 0.51 +1.0
480,369 - PP_0395 0.54 -0.3
480,369 - PP_0395 0.54 +1.0
480,525 + PP_0395 0.64 +0.4
480,526 - PP_0395 0.64 +1.3
480,526 - PP_0395 0.64 +1.0
480,526 - PP_0395 0.64 -0.2
480,542 + PP_0395 0.65 -0.1
480,543 - PP_0395 0.65 -0.7
480,543 - PP_0395 0.65 -0.0
480,543 - PP_0395 0.65 -0.5
480,557 + PP_0395 0.66 +1.5
480,557 + PP_0395 0.66 +0.2
480,557 + PP_0395 0.66 +0.9
480,558 - PP_0395 0.66 -0.1
480,558 - PP_0395 0.66 +0.3
480,558 - PP_0395 0.66 -0.6
480,558 - PP_0395 0.66 +0.8
480,635 + PP_0395 0.71 +0.2
480,636 - PP_0395 0.71 -1.1
480,636 - PP_0395 0.71 -0.6
480,636 - PP_0395 0.71 +1.1
480,698 + PP_0395 0.75 -0.1
480,698 + PP_0395 0.75 +0.2
480,699 - PP_0395 0.75 -0.9
480,699 - PP_0395 0.75 +1.6
480,720 + PP_0395 0.76 +0.2
480,728 + PP_0395 0.77 +1.0
480,728 + PP_0395 0.77 +0.6
480,728 + PP_0395 0.77 +0.2
480,793 - PP_0395 0.81 +0.1
480,793 - PP_0395 0.81 +0.2
480,793 - PP_0395 0.81 +0.6
480,793 - PP_0395 0.81 +0.6
480,793 - PP_0395 0.81 +0.3
480,821 + PP_0395 0.83 -0.1
480,848 + PP_0395 0.84 +1.0
480,848 + PP_0395 0.84 +0.2
480,849 - PP_0395 0.84 -0.0
480,881 + PP_0395 0.86 -0.7
480,923 + PP_0395 0.89 +1.0
480,924 - PP_0395 0.89 -0.9
480,924 - PP_0395 0.89 -0.5
481,020 - +0.0
481,020 - -0.2
481,020 - +0.6
481,098 + -0.5
481,136 + -0.0
481,137 - +0.7
481,137 - -0.6
481,201 + +0.1
481,201 + +0.4
481,202 - +0.0
481,246 + PP_0396 0.12 -0.6
481,246 + PP_0396 0.12 -1.0
481,246 + PP_0396 0.12 +1.4
481,246 + PP_0396 0.12 +0.6
481,247 - PP_0396 0.12 +0.1
481,252 + PP_0396 0.13 +1.4
481,252 + PP_0396 0.13 +0.0
481,252 + PP_0396 0.13 -0.1
481,252 + PP_0396 0.13 -0.2
481,253 - PP_0396 0.13 +0.3
481,253 - PP_0396 0.13 +1.9
481,253 - PP_0396 0.13 +0.6
481,253 - PP_0396 0.13 +1.0
481,255 + PP_0396 0.13 +0.7
481,255 + PP_0396 0.13 -1.6
481,255 + PP_0396 0.13 -0.2
481,255 + PP_0396 0.13 +0.0
481,256 - PP_0396 0.13 -1.0
481,256 - PP_0396 0.13 -0.0
481,256 - PP_0396 0.13 -0.1
481,348 + PP_0396 0.20 +0.3
481,348 + PP_0396 0.20 +0.5
481,348 + PP_0396 0.20 +0.4
481,349 - PP_0396 0.20 +1.6
481,349 - PP_0396 0.20 -2.2
481,349 - +2.6
481,349 - PP_0396 0.20 -0.6
481,349 - PP_0396 0.20 +0.8
481,349 - PP_0396 0.20 +0.5
481,349 - PP_0396 0.20 +0.1
481,349 - PP_0396 0.20 +0.2
481,404 + PP_0396 0.25 +0.4
481,405 - PP_0396 0.25 -0.7
481,516 + PP_0396 0.34 +0.3
481,516 + PP_0396 0.34 +0.7
481,516 + PP_0396 0.34 +0.6
481,516 + PP_0396 0.34 +0.3
481,520 + PP_0396 0.34 +0.8
481,521 - PP_0396 0.34 +0.2
481,521 - PP_0396 0.34 +0.6
481,537 + PP_0396 0.35 -0.1
481,537 + PP_0396 0.35 +0.4
481,538 - PP_0396 0.35 -0.3
481,596 + PP_0396 0.40 +0.4
481,597 - PP_0396 0.40 +1.8
481,661 - PP_0396 0.45 -0.8
481,661 - PP_0396 0.45 +0.1
481,661 - PP_0396 0.45 -2.0
481,661 - PP_0396 0.45 -0.4
481,661 - PP_0396 0.45 +1.3
481,700 + PP_0396 0.48 +0.4
481,700 + PP_0396 0.48 +0.0
481,700 + PP_0396 0.48 +0.2
481,700 + PP_0396 0.48 +1.1
481,701 - PP_0396 0.48 -0.5
481,701 - PP_0396 0.48 +1.5
481,701 - PP_0396 0.48 -0.7
481,701 - PP_0396 0.48 +0.7
481,701 - PP_0396 0.48 +1.3
481,871 + PP_0396 0.61 -0.9
481,872 - PP_0396 0.62 -0.7
481,965 + PP_0396 0.69 +0.1

Or see this region's nucleotide sequence