Experiment: Ethyl decanoate and D-Glucose (C)s
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0296 and PP_0297 are separated by 452 nucleotides PP_0297 and PP_5441 are separated by 129 nucleotides PP_5441 and PP_0298 are separated by 171 nucleotides
PP_0296: PP_0296 - choline / betaine / carnitine ABC transporter - substrate binding protein, at 355,256 to 356,203
_0296
PP_0297: PP_0297 - L-serine dehydratase, at 356,656 to 358,032
_0297
PP_5441: PP_5441 - protein of unknown function, at 358,162 to 358,362
_5441
PP_0298: PP_0298 - AraC-family transcriptional regulator, at 358,534 to 359,640
_0298
Position (kb) 356
357
358
359 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 355.771 kb on - strand, within PP_0296 at 355.805 kb on + strand, within PP_0296 at 355.805 kb on + strand, within PP_0296 at 355.805 kb on + strand, within PP_0296 at 355.805 kb on + strand, within PP_0296 at 355.863 kb on + strand, within PP_0296 at 355.863 kb on + strand, within PP_0296 at 355.863 kb on + strand, within PP_0296 at 355.864 kb on - strand, within PP_0296 at 355.899 kb on - strand, within PP_0296 at 355.998 kb on + strand, within PP_0296 at 355.998 kb on + strand, within PP_0296 at 355.998 kb on + strand, within PP_0296 at 355.999 kb on - strand, within PP_0296 at 355.999 kb on - strand, within PP_0296 at 355.999 kb on - strand, within PP_0296 at 356.037 kb on + strand, within PP_0296 at 356.114 kb on + strand at 356.114 kb on + strand at 356.114 kb on + strand at 356.114 kb on + strand at 356.114 kb on + strand at 356.220 kb on + strand at 356.221 kb on - strand at 356.222 kb on - strand at 356.307 kb on + strand at 356.308 kb on - strand at 356.363 kb on + strand at 356.518 kb on - strand at 356.784 kb on - strand at 356.806 kb on + strand, within PP_0297 at 356.807 kb on - strand, within PP_0297 at 357.020 kb on - strand, within PP_0297 at 357.041 kb on + strand, within PP_0297 at 357.041 kb on + strand, within PP_0297 at 357.042 kb on - strand, within PP_0297 at 357.042 kb on - strand, within PP_0297 at 357.042 kb on - strand, within PP_0297 at 357.082 kb on + strand, within PP_0297 at 357.082 kb on + strand, within PP_0297 at 357.082 kb on + strand, within PP_0297 at 357.082 kb on + strand, within PP_0297 at 357.083 kb on - strand, within PP_0297 at 357.083 kb on - strand, within PP_0297 at 357.083 kb on - strand, within PP_0297 at 357.085 kb on + strand, within PP_0297 at 357.085 kb on + strand, within PP_0297 at 357.086 kb on - strand, within PP_0297 at 357.086 kb on - strand, within PP_0297 at 357.086 kb on - strand, within PP_0297 at 357.337 kb on + strand, within PP_0297 at 357.337 kb on + strand at 357.338 kb on - strand, within PP_0297 at 357.338 kb on - strand, within PP_0297 at 357.338 kb on - strand, within PP_0297 at 357.562 kb on + strand, within PP_0297 at 357.562 kb on + strand, within PP_0297 at 357.562 kb on + strand, within PP_0297 at 357.562 kb on + strand, within PP_0297 at 357.562 kb on + strand, within PP_0297 at 357.563 kb on - strand, within PP_0297 at 357.563 kb on - strand, within PP_0297 at 357.563 kb on - strand, within PP_0297 at 357.565 kb on + strand, within PP_0297 at 357.565 kb on + strand, within PP_0297 at 357.565 kb on + strand, within PP_0297 at 357.566 kb on - strand, within PP_0297 at 357.566 kb on - strand, within PP_0297 at 357.566 kb on - strand, within PP_0297 at 357.610 kb on + strand, within PP_0297 at 357.938 kb on + strand at 357.969 kb on + strand at 357.970 kb on - strand at 357.982 kb on + strand at 357.982 kb on + strand at 357.982 kb on + strand at 357.983 kb on - strand at 358.079 kb on + strand at 358.080 kb on - strand at 358.102 kb on - strand at 358.102 kb on - strand at 358.161 kb on + strand at 358.161 kb on + strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.172 kb on - strand at 358.172 kb on - strand at 358.245 kb on + strand, within PP_5441 at 358.245 kb on + strand, within PP_5441 at 358.245 kb on + strand, within PP_5441 at 358.246 kb on - strand, within PP_5441 at 358.287 kb on - strand, within PP_5441 at 358.287 kb on - strand, within PP_5441 at 358.373 kb on - strand at 358.448 kb on + strand at 358.449 kb on - strand at 358.475 kb on + strand at 358.476 kb on - strand at 358.485 kb on + strand at 358.485 kb on + strand at 358.485 kb on + strand at 358.485 kb on + strand at 358.485 kb on + strand at 358.486 kb on - strand at 358.601 kb on + strand at 358.601 kb on + strand at 358.601 kb on + strand at 358.601 kb on + strand at 358.602 kb on - strand at 358.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethyl decanoate and D-Glucose (C)s remove 355,771 - PP_0296 0.54 -0.3 355,805 + PP_0296 0.58 +0.0 355,805 + PP_0296 0.58 +0.3 355,805 + PP_0296 0.58 -1.0 355,805 + PP_0296 0.58 +0.4 355,863 + PP_0296 0.64 -0.3 355,863 + PP_0296 0.64 -0.8 355,863 + PP_0296 0.64 +0.5 355,864 - PP_0296 0.64 +0.2 355,899 - PP_0296 0.68 -0.1 355,998 + PP_0296 0.78 +0.1 355,998 + PP_0296 0.78 +0.6 355,998 + PP_0296 0.78 +0.7 355,999 - PP_0296 0.78 -0.2 355,999 - PP_0296 0.78 -0.5 355,999 - PP_0296 0.78 +0.2 356,037 + PP_0296 0.82 -0.4 356,114 + +0.8 356,114 + +1.8 356,114 + +0.1 356,114 + -0.3 356,114 + +0.1 356,220 + +0.8 356,221 - +0.2 356,222 - -0.4 356,307 + +0.3 356,308 - -0.9 356,363 + +1.8 356,518 - -0.3 356,784 - -1.2 356,806 + PP_0297 0.11 -0.2 356,807 - PP_0297 0.11 -0.3 357,020 - PP_0297 0.26 +0.7 357,041 + PP_0297 0.28 -0.6 357,041 + PP_0297 0.28 +0.1 357,042 - PP_0297 0.28 +0.0 357,042 - PP_0297 0.28 -0.5 357,042 - PP_0297 0.28 +0.6 357,082 + PP_0297 0.31 -0.6 357,082 + PP_0297 0.31 -0.8 357,082 + PP_0297 0.31 +0.1 357,082 + PP_0297 0.31 -0.6 357,083 - PP_0297 0.31 +0.5 357,083 - PP_0297 0.31 +0.4 357,083 - PP_0297 0.31 -0.1 357,085 + PP_0297 0.31 -0.3 357,085 + PP_0297 0.31 -0.1 357,086 - PP_0297 0.31 -1.3 357,086 - PP_0297 0.31 -0.4 357,086 - PP_0297 0.31 -0.5 357,337 + PP_0297 0.49 +0.0 357,337 + +2.8 357,338 - PP_0297 0.50 -1.6 357,338 - PP_0297 0.50 -0.5 357,338 - PP_0297 0.50 +0.0 357,562 + PP_0297 0.66 +0.9 357,562 + PP_0297 0.66 -0.6 357,562 + PP_0297 0.66 -0.4 357,562 + PP_0297 0.66 +0.9 357,562 + PP_0297 0.66 -0.2 357,563 - PP_0297 0.66 -0.4 357,563 - PP_0297 0.66 -0.3 357,563 - PP_0297 0.66 -0.3 357,565 + PP_0297 0.66 +0.4 357,565 + PP_0297 0.66 -1.9 357,565 + PP_0297 0.66 -0.7 357,566 - PP_0297 0.66 -2.0 357,566 - PP_0297 0.66 -2.5 357,566 - PP_0297 0.66 +0.7 357,610 + PP_0297 0.69 -0.8 357,938 + +1.2 357,969 + +1.8 357,970 - -0.2 357,982 + +1.3 357,982 + +1.8 357,982 + -0.4 357,983 - -1.3 358,079 + +1.0 358,080 - +0.4 358,102 - +0.1 358,102 - +0.3 358,161 + +1.0 358,161 + +1.2 358,162 - +0.2 358,162 - +2.8 358,162 - +0.0 358,162 - +1.6 358,172 - +0.2 358,172 - +0.3 358,245 + PP_5441 0.41 +1.2 358,245 + PP_5441 0.41 +0.8 358,245 + PP_5441 0.41 -0.4 358,246 - PP_5441 0.42 +0.2 358,287 - PP_5441 0.62 +0.5 358,287 - PP_5441 0.62 -0.8 358,373 - +0.7 358,448 + +0.2 358,449 - -1.1 358,475 + +0.8 358,476 - -1.0 358,485 + -0.3 358,485 + +0.5 358,485 + -0.1 358,485 + +2.8 358,485 + -1.2 358,486 - -0.6 358,601 + -0.6 358,601 + +0.1 358,601 + -0.9 358,601 + +0.0 358,602 - +0.6 358,602 - +0.0
Or see this region's nucleotide sequence