Strain Fitness in Pseudomonas putida KT2440 around PP_5307

Experiment: Ethyl decanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5306 and PP_5307 are separated by 3 nucleotidesPP_5307 and PP_5308 overlap by 4 nucleotidesPP_5308 and PP_5309 are separated by 94 nucleotides PP_5306: PP_5306 - Biopolymer transport protein ExbB, at 6,053,657 to 6,054,619 _5306 PP_5307: PP_5307 - TonB-gated outer membrane transporter - gating inner membrane protein, at 6,054,623 to 6,055,051 _5307 PP_5308: PP_5308 - Protein TonB, at 6,055,048 to 6,055,779 _5308 PP_5309: PP_5309 - oxidative and nitrosative stress transcriptional dual regulator, at 6,055,874 to 6,056,800 _5309 Position (kb) 6054 6055 6056Strain fitness (log2 ratio) -1 0 1 2at 6055.078 kb on + strandat 6055.841 kb on + strandat 6055.842 kb on - strandat 6055.873 kb on + strandat 6055.873 kb on + strandat 6055.873 kb on + strandat 6055.874 kb on - strandat 6055.891 kb on - strandat 6055.895 kb on + strandat 6056.038 kb on - strand, within PP_5309

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethyl decanoate (C)
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6,055,078 + -0.0
6,055,841 + -0.8
6,055,842 - -0.1
6,055,873 + +0.9
6,055,873 + +0.6
6,055,873 + +0.4
6,055,874 - +2.5
6,055,891 - +2.5
6,055,895 + +2.5
6,056,038 - PP_5309 0.18 +2.5

Or see this region's nucleotide sequence