Strain Fitness in Pseudomonas putida KT2440 around PP_5306

Experiment: Ethyl decanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5305 and PP_5306 are separated by 190 nucleotidesPP_5306 and PP_5307 are separated by 3 nucleotidesPP_5307 and PP_5308 overlap by 4 nucleotides PP_5305: PP_5305 - Epimerase/dehydratase-related protein, at 6,052,609 to 6,053,466 _5305 PP_5306: PP_5306 - Biopolymer transport protein ExbB, at 6,053,657 to 6,054,619 _5306 PP_5307: PP_5307 - TonB-gated outer membrane transporter - gating inner membrane protein, at 6,054,623 to 6,055,051 _5307 PP_5308: PP_5308 - Protein TonB, at 6,055,048 to 6,055,779 _5308 Position (kb) 6053 6054 6055Strain fitness (log2 ratio) -1 0 1at 6052.659 kb on - strandat 6052.660 kb on + strandat 6052.660 kb on + strandat 6052.660 kb on + strandat 6052.661 kb on - strandat 6052.661 kb on - strandat 6052.710 kb on + strand, within PP_5305at 6052.760 kb on + strand, within PP_5305at 6052.760 kb on + strand, within PP_5305at 6052.760 kb on + strand, within PP_5305at 6052.761 kb on - strand, within PP_5305at 6052.761 kb on - strand, within PP_5305at 6052.820 kb on + strand, within PP_5305at 6052.820 kb on + strand, within PP_5305at 6052.820 kb on + strand, within PP_5305at 6052.821 kb on - strand, within PP_5305at 6052.821 kb on - strand, within PP_5305at 6052.821 kb on - strand, within PP_5305at 6052.821 kb on - strand, within PP_5305at 6052.821 kb on - strand, within PP_5305at 6052.911 kb on - strand, within PP_5305at 6052.911 kb on - strand, within PP_5305at 6052.982 kb on + strand, within PP_5305at 6052.982 kb on + strand, within PP_5305at 6052.982 kb on + strand, within PP_5305at 6052.982 kb on + strand, within PP_5305at 6052.982 kb on + strand, within PP_5305at 6052.983 kb on - strand, within PP_5305at 6052.983 kb on - strand, within PP_5305at 6052.983 kb on - strand, within PP_5305at 6052.986 kb on + strand, within PP_5305at 6052.987 kb on - strand, within PP_5305at 6052.987 kb on - strand, within PP_5305at 6053.066 kb on + strand, within PP_5305at 6053.123 kb on + strand, within PP_5305at 6053.123 kb on + strand, within PP_5305at 6053.213 kb on + strandat 6053.213 kb on + strand, within PP_5305at 6053.213 kb on + strand, within PP_5305at 6053.214 kb on - strand, within PP_5305at 6053.214 kb on - strand, within PP_5305at 6053.214 kb on - strand, within PP_5305at 6053.214 kb on - strand, within PP_5305at 6053.262 kb on - strand, within PP_5305at 6053.270 kb on + strand, within PP_5305at 6053.270 kb on + strand, within PP_5305at 6053.271 kb on - strand, within PP_5305at 6053.471 kb on - strandat 6053.528 kb on + strandat 6053.542 kb on + strandat 6055.078 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethyl decanoate (C)
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6,052,659 - -0.3
6,052,660 + -0.5
6,052,660 + -0.6
6,052,660 + +0.8
6,052,661 - -0.4
6,052,661 - +0.2
6,052,710 + PP_5305 0.12 -0.6
6,052,760 + PP_5305 0.18 +0.5
6,052,760 + PP_5305 0.18 -0.0
6,052,760 + PP_5305 0.18 -0.3
6,052,761 - PP_5305 0.18 +0.2
6,052,761 - PP_5305 0.18 -0.3
6,052,820 + PP_5305 0.25 +0.1
6,052,820 + PP_5305 0.25 -0.3
6,052,820 + PP_5305 0.25 -0.2
6,052,821 - PP_5305 0.25 -0.0
6,052,821 - PP_5305 0.25 +0.6
6,052,821 - PP_5305 0.25 +0.1
6,052,821 - PP_5305 0.25 -0.3
6,052,821 - PP_5305 0.25 +0.6
6,052,911 - PP_5305 0.35 +0.3
6,052,911 - PP_5305 0.35 +0.2
6,052,982 + PP_5305 0.43 -0.6
6,052,982 + PP_5305 0.43 +0.7
6,052,982 + PP_5305 0.43 +0.2
6,052,982 + PP_5305 0.43 +1.2
6,052,982 + PP_5305 0.43 +0.7
6,052,983 - PP_5305 0.44 -1.4
6,052,983 - PP_5305 0.44 +0.5
6,052,983 - PP_5305 0.44 +1.3
6,052,986 + PP_5305 0.44 -0.2
6,052,987 - PP_5305 0.44 -1.0
6,052,987 - PP_5305 0.44 -0.2
6,053,066 + PP_5305 0.53 -0.6
6,053,123 + PP_5305 0.60 +1.1
6,053,123 + PP_5305 0.60 +0.8
6,053,213 + +0.9
6,053,213 + PP_5305 0.70 -0.4
6,053,213 + PP_5305 0.70 -1.3
6,053,214 - PP_5305 0.71 -1.0
6,053,214 - PP_5305 0.71 +0.8
6,053,214 - PP_5305 0.71 -0.6
6,053,214 - PP_5305 0.71 -0.6
6,053,262 - PP_5305 0.76 +1.3
6,053,270 + PP_5305 0.77 -0.9
6,053,270 + PP_5305 0.77 +0.8
6,053,271 - PP_5305 0.77 -0.6
6,053,471 - -1.7
6,053,528 + +0.9
6,053,542 + +0.2
6,055,078 + -0.0

Or see this region's nucleotide sequence