Experiment: Ethyl decanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5305 and PP_5306 are separated by 190 nucleotides PP_5306 and PP_5307 are separated by 3 nucleotides PP_5307 and PP_5308 overlap by 4 nucleotides
PP_5305: PP_5305 - Epimerase/dehydratase-related protein, at 6,052,609 to 6,053,466
_5305
PP_5306: PP_5306 - Biopolymer transport protein ExbB, at 6,053,657 to 6,054,619
_5306
PP_5307: PP_5307 - TonB-gated outer membrane transporter - gating inner membrane protein, at 6,054,623 to 6,055,051
_5307
PP_5308: PP_5308 - Protein TonB, at 6,055,048 to 6,055,779
_5308
Position (kb)
6053
6054
6055 Strain fitness (log2 ratio)
-1
0
1 at 6052.659 kb on - strand at 6052.660 kb on + strand at 6052.660 kb on + strand at 6052.660 kb on + strand at 6052.661 kb on - strand at 6052.661 kb on - strand at 6052.710 kb on + strand, within PP_5305 at 6052.760 kb on + strand, within PP_5305 at 6052.760 kb on + strand, within PP_5305 at 6052.760 kb on + strand, within PP_5305 at 6052.761 kb on - strand, within PP_5305 at 6052.761 kb on - strand, within PP_5305 at 6052.820 kb on + strand, within PP_5305 at 6052.820 kb on + strand, within PP_5305 at 6052.820 kb on + strand, within PP_5305 at 6052.821 kb on - strand, within PP_5305 at 6052.821 kb on - strand, within PP_5305 at 6052.821 kb on - strand, within PP_5305 at 6052.821 kb on - strand, within PP_5305 at 6052.821 kb on - strand, within PP_5305 at 6052.911 kb on - strand, within PP_5305 at 6052.911 kb on - strand, within PP_5305 at 6052.982 kb on + strand, within PP_5305 at 6052.982 kb on + strand, within PP_5305 at 6052.982 kb on + strand, within PP_5305 at 6052.982 kb on + strand, within PP_5305 at 6052.982 kb on + strand, within PP_5305 at 6052.983 kb on - strand, within PP_5305 at 6052.983 kb on - strand, within PP_5305 at 6052.983 kb on - strand, within PP_5305 at 6052.986 kb on + strand, within PP_5305 at 6052.987 kb on - strand, within PP_5305 at 6052.987 kb on - strand, within PP_5305 at 6053.066 kb on + strand, within PP_5305 at 6053.123 kb on + strand, within PP_5305 at 6053.123 kb on + strand, within PP_5305 at 6053.213 kb on + strand at 6053.213 kb on + strand, within PP_5305 at 6053.213 kb on + strand, within PP_5305 at 6053.214 kb on - strand, within PP_5305 at 6053.214 kb on - strand, within PP_5305 at 6053.214 kb on - strand, within PP_5305 at 6053.214 kb on - strand, within PP_5305 at 6053.262 kb on - strand, within PP_5305 at 6053.270 kb on + strand, within PP_5305 at 6053.270 kb on + strand, within PP_5305 at 6053.271 kb on - strand, within PP_5305 at 6053.471 kb on - strand at 6053.528 kb on + strand at 6053.542 kb on + strand at 6055.078 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethyl decanoate (C) remove 6,052,659 - -0.3 6,052,660 + -0.5 6,052,660 + -0.6 6,052,660 + +0.8 6,052,661 - -0.4 6,052,661 - +0.2 6,052,710 + PP_5305 0.12 -0.6 6,052,760 + PP_5305 0.18 +0.5 6,052,760 + PP_5305 0.18 -0.0 6,052,760 + PP_5305 0.18 -0.3 6,052,761 - PP_5305 0.18 +0.2 6,052,761 - PP_5305 0.18 -0.3 6,052,820 + PP_5305 0.25 +0.1 6,052,820 + PP_5305 0.25 -0.3 6,052,820 + PP_5305 0.25 -0.2 6,052,821 - PP_5305 0.25 -0.0 6,052,821 - PP_5305 0.25 +0.6 6,052,821 - PP_5305 0.25 +0.1 6,052,821 - PP_5305 0.25 -0.3 6,052,821 - PP_5305 0.25 +0.6 6,052,911 - PP_5305 0.35 +0.3 6,052,911 - PP_5305 0.35 +0.2 6,052,982 + PP_5305 0.43 -0.6 6,052,982 + PP_5305 0.43 +0.7 6,052,982 + PP_5305 0.43 +0.2 6,052,982 + PP_5305 0.43 +1.2 6,052,982 + PP_5305 0.43 +0.7 6,052,983 - PP_5305 0.44 -1.4 6,052,983 - PP_5305 0.44 +0.5 6,052,983 - PP_5305 0.44 +1.3 6,052,986 + PP_5305 0.44 -0.2 6,052,987 - PP_5305 0.44 -1.0 6,052,987 - PP_5305 0.44 -0.2 6,053,066 + PP_5305 0.53 -0.6 6,053,123 + PP_5305 0.60 +1.1 6,053,123 + PP_5305 0.60 +0.8 6,053,213 + +0.9 6,053,213 + PP_5305 0.70 -0.4 6,053,213 + PP_5305 0.70 -1.3 6,053,214 - PP_5305 0.71 -1.0 6,053,214 - PP_5305 0.71 +0.8 6,053,214 - PP_5305 0.71 -0.6 6,053,214 - PP_5305 0.71 -0.6 6,053,262 - PP_5305 0.76 +1.3 6,053,270 + PP_5305 0.77 -0.9 6,053,270 + PP_5305 0.77 +0.8 6,053,271 - PP_5305 0.77 -0.6 6,053,471 - -1.7 6,053,528 + +0.9 6,053,542 + +0.2 6,055,078 + -0.0
Or see this region's nucleotide sequence