Strain Fitness in Pseudomonas putida KT2440 around PP_4544

Experiment: Ethyl decanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4543 and PP_4544 are separated by 178 nucleotidesPP_4544 and PP_4545 are separated by 200 nucleotides PP_4543: PP_4543 - conserved protein of unknown function, at 5,159,843 to 5,161,054 _4543 PP_4544: PP_4544 - conserved exported protein of unknown function, at 5,161,233 to 5,162,477 _4544 PP_4545: PP_4545 - beta-ketodecanoyl-(Acyl-carrier-protein) synthase, at 5,162,678 to 5,163,850 _4545 Position (kb) 5161 5162 5163Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5160.282 kb on + strand, within PP_4543at 5160.282 kb on + strand, within PP_4543at 5160.283 kb on - strand, within PP_4543at 5160.283 kb on - strand, within PP_4543at 5160.294 kb on + strand, within PP_4543at 5160.294 kb on + strand, within PP_4543at 5160.294 kb on + strand, within PP_4543at 5160.294 kb on + strand, within PP_4543at 5160.295 kb on - strand, within PP_4543at 5160.299 kb on + strand, within PP_4543at 5160.299 kb on + strand, within PP_4543at 5160.299 kb on + strand, within PP_4543at 5160.299 kb on + strand, within PP_4543at 5160.299 kb on + strand, within PP_4543at 5160.299 kb on + strand, within PP_4543at 5160.299 kb on + strand, within PP_4543at 5160.299 kb on + strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.300 kb on - strand, within PP_4543at 5160.580 kb on - strand, within PP_4543at 5160.580 kb on - strand, within PP_4543at 5160.685 kb on - strand, within PP_4543at 5160.738 kb on + strand, within PP_4543at 5160.738 kb on + strand, within PP_4543at 5160.739 kb on - strand, within PP_4543at 5160.739 kb on - strand, within PP_4543at 5160.739 kb on - strand, within PP_4543at 5160.739 kb on - strandat 5160.739 kb on - strand, within PP_4543at 5160.785 kb on + strand, within PP_4543at 5160.786 kb on - strand, within PP_4543at 5161.001 kb on + strandat 5161.002 kb on - strandat 5161.055 kb on + strandat 5161.055 kb on + strandat 5161.055 kb on + strandat 5161.056 kb on - strandat 5161.063 kb on + strandat 5161.063 kb on + strandat 5161.064 kb on - strandat 5161.068 kb on - strandat 5161.082 kb on + strandat 5161.082 kb on + strandat 5161.093 kb on + strandat 5161.093 kb on + strandat 5161.094 kb on - strandat 5161.094 kb on - strandat 5161.094 kb on - strandat 5161.117 kb on - strandat 5161.141 kb on + strandat 5161.152 kb on + strandat 5161.232 kb on + strandat 5161.232 kb on + strandat 5161.233 kb on - strandat 5161.233 kb on - strandat 5161.233 kb on - strandat 5161.233 kb on - strandat 5161.233 kb on - strandat 5161.253 kb on + strandat 5161.261 kb on + strandat 5161.261 kb on + strandat 5161.368 kb on + strand, within PP_4544at 5161.509 kb on + strand, within PP_4544at 5161.570 kb on + strand, within PP_4544at 5161.571 kb on - strand, within PP_4544at 5161.590 kb on + strand, within PP_4544at 5161.591 kb on - strand, within PP_4544at 5161.591 kb on - strand, within PP_4544at 5161.591 kb on - strandat 5161.683 kb on + strand, within PP_4544at 5161.683 kb on + strand, within PP_4544at 5161.683 kb on + strand, within PP_4544at 5161.684 kb on - strand, within PP_4544at 5161.684 kb on - strand, within PP_4544at 5161.684 kb on - strand, within PP_4544at 5161.719 kb on + strand, within PP_4544at 5161.719 kb on + strand, within PP_4544at 5161.848 kb on + strand, within PP_4544at 5161.848 kb on + strand, within PP_4544at 5161.848 kb on + strand, within PP_4544at 5161.848 kb on + strand, within PP_4544at 5161.849 kb on - strand, within PP_4544at 5161.849 kb on - strand, within PP_4544at 5161.849 kb on - strand, within PP_4544at 5161.896 kb on + strand, within PP_4544at 5161.897 kb on - strand, within PP_4544at 5161.897 kb on - strand, within PP_4544at 5161.935 kb on + strand, within PP_4544at 5161.936 kb on - strand, within PP_4544at 5161.936 kb on - strand, within PP_4544at 5161.957 kb on - strand, within PP_4544at 5161.957 kb on - strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.151 kb on + strand, within PP_4544at 5162.160 kb on + strand, within PP_4544at 5162.160 kb on + strandat 5162.161 kb on - strand, within PP_4544at 5162.247 kb on + strand, within PP_4544at 5162.247 kb on + strand, within PP_4544at 5162.317 kb on - strand, within PP_4544at 5162.352 kb on + strand, within PP_4544at 5162.476 kb on - strandat 5162.597 kb on - strandat 5162.625 kb on + strandat 5162.625 kb on + strandat 5162.626 kb on - strandat 5162.701 kb on + strandat 5162.701 kb on + strandat 5162.701 kb on + strandat 5162.769 kb on + strandat 5162.770 kb on - strandat 5162.806 kb on + strand, within PP_4545at 5162.807 kb on - strand, within PP_4545at 5163.020 kb on + strand, within PP_4545at 5163.020 kb on + strand, within PP_4545at 5163.021 kb on - strand, within PP_4545at 5163.021 kb on - strand, within PP_4545at 5163.021 kb on - strand, within PP_4545at 5163.291 kb on - strand, within PP_4545at 5163.295 kb on + strand, within PP_4545at 5163.296 kb on - strand, within PP_4545

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ethyl decanoate (C)
remove
5,160,282 + PP_4543 0.36 -0.6
5,160,282 + PP_4543 0.36 +3.0
5,160,283 - PP_4543 0.36 +0.9
5,160,283 - PP_4543 0.36 -0.1
5,160,294 + PP_4543 0.37 -0.4
5,160,294 + PP_4543 0.37 +1.1
5,160,294 + PP_4543 0.37 -0.7
5,160,294 + PP_4543 0.37 +0.3
5,160,295 - PP_4543 0.37 +0.1
5,160,299 + PP_4543 0.38 -0.1
5,160,299 + PP_4543 0.38 -0.2
5,160,299 + PP_4543 0.38 +1.2
5,160,299 + PP_4543 0.38 +0.3
5,160,299 + PP_4543 0.38 +0.1
5,160,299 + PP_4543 0.38 -1.3
5,160,299 + PP_4543 0.38 +1.1
5,160,299 + PP_4543 0.38 +0.7
5,160,300 - PP_4543 0.38 +0.0
5,160,300 - PP_4543 0.38 +1.6
5,160,300 - PP_4543 0.38 +2.0
5,160,300 - PP_4543 0.38 +0.3
5,160,300 - PP_4543 0.38 -1.6
5,160,300 - PP_4543 0.38 -1.3
5,160,300 - PP_4543 0.38 -0.2
5,160,300 - PP_4543 0.38 +0.3
5,160,300 - PP_4543 0.38 -1.3
5,160,580 - PP_4543 0.61 +0.1
5,160,580 - PP_4543 0.61 -0.6
5,160,685 - PP_4543 0.69 -0.8
5,160,738 + PP_4543 0.74 -0.1
5,160,738 + PP_4543 0.74 +0.4
5,160,739 - PP_4543 0.74 -0.0
5,160,739 - PP_4543 0.74 -0.2
5,160,739 - PP_4543 0.74 +0.5
5,160,739 - +0.7
5,160,739 - PP_4543 0.74 -1.6
5,160,785 + PP_4543 0.78 +0.3
5,160,786 - PP_4543 0.78 -0.1
5,161,001 + -0.1
5,161,002 - +0.3
5,161,055 + +2.0
5,161,055 + -0.4
5,161,055 + +0.1
5,161,056 - +0.2
5,161,063 + +1.0
5,161,063 + -0.1
5,161,064 - -1.6
5,161,068 - -0.2
5,161,082 + -0.0
5,161,082 + -0.3
5,161,093 + +0.6
5,161,093 + +0.5
5,161,094 - +0.4
5,161,094 - +1.5
5,161,094 - -0.1
5,161,117 - -0.1
5,161,141 + -0.9
5,161,152 + -0.8
5,161,232 + +0.3
5,161,232 + +0.3
5,161,233 - -0.6
5,161,233 - +1.4
5,161,233 - +0.4
5,161,233 - -0.3
5,161,233 - +1.4
5,161,253 + -0.0
5,161,261 + -0.5
5,161,261 + +0.0
5,161,368 + PP_4544 0.11 +0.2
5,161,509 + PP_4544 0.22 +1.5
5,161,570 + PP_4544 0.27 -0.8
5,161,571 - PP_4544 0.27 -0.5
5,161,590 + PP_4544 0.29 -0.8
5,161,591 - PP_4544 0.29 -0.3
5,161,591 - PP_4544 0.29 -0.0
5,161,591 - +1.4
5,161,683 + PP_4544 0.36 +1.2
5,161,683 + PP_4544 0.36 +0.3
5,161,683 + PP_4544 0.36 +1.0
5,161,684 - PP_4544 0.36 +0.5
5,161,684 - PP_4544 0.36 +0.3
5,161,684 - PP_4544 0.36 +0.1
5,161,719 + PP_4544 0.39 -0.4
5,161,719 + PP_4544 0.39 +0.5
5,161,848 + PP_4544 0.49 +0.6
5,161,848 + PP_4544 0.49 +0.1
5,161,848 + PP_4544 0.49 -3.1
5,161,848 + PP_4544 0.49 -0.2
5,161,849 - PP_4544 0.49 -0.2
5,161,849 - PP_4544 0.49 -1.3
5,161,849 - PP_4544 0.49 -1.1
5,161,896 + PP_4544 0.53 -0.6
5,161,897 - PP_4544 0.53 +1.8
5,161,897 - PP_4544 0.53 +1.3
5,161,935 + PP_4544 0.56 +1.4
5,161,936 - PP_4544 0.56 -0.8
5,161,936 - PP_4544 0.56 +0.4
5,161,957 - PP_4544 0.58 +0.0
5,161,957 - PP_4544 0.58 +0.3
5,162,025 + PP_4544 0.64 +0.1
5,162,025 + PP_4544 0.64 +0.8
5,162,025 + PP_4544 0.64 +1.3
5,162,025 + PP_4544 0.64 +0.1
5,162,025 + PP_4544 0.64 -0.2
5,162,025 + PP_4544 0.64 -0.5
5,162,025 + PP_4544 0.64 -0.1
5,162,026 - PP_4544 0.64 -0.0
5,162,026 - PP_4544 0.64 -0.1
5,162,026 - PP_4544 0.64 +1.5
5,162,026 - PP_4544 0.64 +0.3
5,162,026 - PP_4544 0.64 -0.2
5,162,026 - PP_4544 0.64 +0.0
5,162,026 - PP_4544 0.64 -0.8
5,162,026 - PP_4544 0.64 +1.4
5,162,026 - PP_4544 0.64 -1.4
5,162,151 + PP_4544 0.74 -0.6
5,162,160 + PP_4544 0.74 -0.5
5,162,160 + +0.1
5,162,161 - PP_4544 0.75 +0.5
5,162,247 + PP_4544 0.81 +1.5
5,162,247 + PP_4544 0.81 +0.1
5,162,317 - PP_4544 0.87 -0.2
5,162,352 + PP_4544 0.90 +0.7
5,162,476 - +1.3
5,162,597 - -1.0
5,162,625 + -0.7
5,162,625 + +0.3
5,162,626 - -0.4
5,162,701 + -1.6
5,162,701 + +2.4
5,162,701 + -0.3
5,162,769 + -1.1
5,162,770 - -0.4
5,162,806 + PP_4545 0.11 -0.1
5,162,807 - PP_4545 0.11 -0.9
5,163,020 + PP_4545 0.29 -3.0
5,163,020 + PP_4545 0.29 -1.1
5,163,021 - PP_4545 0.29 -1.4
5,163,021 - PP_4545 0.29 +0.4
5,163,021 - PP_4545 0.29 -2.0
5,163,291 - PP_4545 0.52 -1.7
5,163,295 + PP_4545 0.53 -0.2
5,163,296 - PP_4545 0.53 -1.4

Or see this region's nucleotide sequence