Experiment: Ethyl decanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1797 and PP_1798 overlap by 4 nucleotides PP_1798 and PP_1799 are separated by 438 nucleotides
PP_1797: PP_1797 - HlyD family secretion protein, at 2,018,726 to 2,020,051
_1797
PP_1798: PP_1798 - Outer membrane efflux protein, at 2,020,048 to 2,021,463
_1798
PP_1799: PP_1799 - GDP-mannose 4,6-dehydratase, at 2,021,902 to 2,022,969
_1799
Position (kb)
2020
2021
2022 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2019.071 kb on - strand, within PP_1797 at 2019.071 kb on - strand, within PP_1797 at 2019.126 kb on + strand, within PP_1797 at 2019.127 kb on - strand, within PP_1797 at 2019.136 kb on + strand, within PP_1797 at 2019.312 kb on - strand, within PP_1797 at 2019.439 kb on + strand, within PP_1797 at 2019.439 kb on + strand, within PP_1797 at 2019.440 kb on - strand at 2019.440 kb on - strand, within PP_1797 at 2019.674 kb on - strand, within PP_1797 at 2019.823 kb on + strand, within PP_1797 at 2019.824 kb on - strand, within PP_1797 at 2019.824 kb on - strand, within PP_1797 at 2019.878 kb on + strand, within PP_1797 at 2019.878 kb on + strand, within PP_1797 at 2019.878 kb on + strand, within PP_1797 at 2019.878 kb on + strand, within PP_1797 at 2019.878 kb on + strand, within PP_1797 at 2019.878 kb on + strand, within PP_1797 at 2019.879 kb on - strand, within PP_1797 at 2019.879 kb on - strand, within PP_1797 at 2019.881 kb on + strand, within PP_1797 at 2019.881 kb on + strand, within PP_1797 at 2019.881 kb on + strand, within PP_1797 at 2019.881 kb on + strand, within PP_1797 at 2019.881 kb on + strand, within PP_1797 at 2019.881 kb on + strand, within PP_1797 at 2019.998 kb on + strand at 2019.998 kb on + strand at 2020.110 kb on + strand at 2020.165 kb on + strand at 2020.165 kb on + strand at 2020.165 kb on + strand at 2020.166 kb on - strand at 2020.166 kb on - strand at 2020.189 kb on + strand at 2020.354 kb on + strand, within PP_1798 at 2020.354 kb on + strand, within PP_1798 at 2020.355 kb on - strand, within PP_1798 at 2020.355 kb on - strand, within PP_1798 at 2020.355 kb on - strand, within PP_1798 at 2020.357 kb on - strand, within PP_1798 at 2020.357 kb on - strand, within PP_1798 at 2020.357 kb on - strand, within PP_1798 at 2020.369 kb on + strand, within PP_1798 at 2020.397 kb on - strand, within PP_1798 at 2020.420 kb on + strand, within PP_1798 at 2020.485 kb on + strand, within PP_1798 at 2020.485 kb on + strand, within PP_1798 at 2020.486 kb on - strand, within PP_1798 at 2020.507 kb on + strand, within PP_1798 at 2020.508 kb on - strand, within PP_1798 at 2020.700 kb on + strand, within PP_1798 at 2020.760 kb on + strand, within PP_1798 at 2020.761 kb on - strand, within PP_1798 at 2020.894 kb on - strand, within PP_1798 at 2020.906 kb on + strand, within PP_1798 at 2020.922 kb on + strand, within PP_1798 at 2020.954 kb on + strand, within PP_1798 at 2020.954 kb on + strand, within PP_1798 at 2020.955 kb on - strand, within PP_1798 at 2020.955 kb on - strand, within PP_1798 at 2020.962 kb on + strand, within PP_1798 at 2020.962 kb on + strand, within PP_1798 at 2020.963 kb on - strand, within PP_1798 at 2020.987 kb on + strand, within PP_1798 at 2020.987 kb on + strand, within PP_1798 at 2020.987 kb on + strand, within PP_1798 at 2020.987 kb on + strand, within PP_1798 at 2020.988 kb on - strand, within PP_1798 at 2020.988 kb on - strand, within PP_1798 at 2021.020 kb on + strand, within PP_1798 at 2021.020 kb on + strand, within PP_1798 at 2021.021 kb on - strand, within PP_1798 at 2021.021 kb on - strand, within PP_1798 at 2021.059 kb on + strand, within PP_1798 at 2021.060 kb on - strand, within PP_1798 at 2021.060 kb on - strand, within PP_1798 at 2021.060 kb on - strand, within PP_1798 at 2021.060 kb on - strand, within PP_1798 at 2021.172 kb on + strand, within PP_1798 at 2021.262 kb on + strand, within PP_1798 at 2021.262 kb on + strand, within PP_1798 at 2021.262 kb on + strand, within PP_1798 at 2021.263 kb on - strand, within PP_1798 at 2021.263 kb on - strand, within PP_1798 at 2021.263 kb on - strand, within PP_1798 at 2021.263 kb on - strand, within PP_1798 at 2021.315 kb on - strand, within PP_1798 at 2021.315 kb on - strand, within PP_1798 at 2021.315 kb on - strand, within PP_1798 at 2021.323 kb on - strand at 2021.325 kb on + strand at 2021.325 kb on + strand at 2021.326 kb on - strand at 2021.326 kb on - strand at 2021.523 kb on + strand at 2021.634 kb on + strand at 2021.634 kb on + strand at 2021.635 kb on - strand at 2021.635 kb on - strand at 2021.635 kb on - strand at 2021.642 kb on + strand at 2021.643 kb on - strand at 2021.643 kb on - strand at 2021.658 kb on + strand at 2021.658 kb on + strand at 2021.658 kb on + strand at 2021.659 kb on - strand at 2021.659 kb on - strand at 2021.659 kb on - strand at 2021.695 kb on + strand at 2021.695 kb on + strand at 2021.696 kb on - strand at 2021.696 kb on - strand at 2021.696 kb on - strand at 2021.755 kb on + strand at 2021.818 kb on + strand at 2021.819 kb on - strand at 2021.832 kb on + strand at 2021.832 kb on + strand at 2021.832 kb on + strand at 2021.832 kb on + strand at 2021.832 kb on + strand at 2021.833 kb on - strand at 2021.833 kb on - strand at 2021.833 kb on - strand at 2021.833 kb on - strand at 2021.833 kb on - strand at 2021.833 kb on - strand at 2021.833 kb on - strand at 2021.836 kb on + strand at 2021.836 kb on + strand at 2021.836 kb on + strand at 2021.836 kb on + strand at 2021.836 kb on + strand at 2021.836 kb on + strand at 2021.836 kb on + strand at 2021.837 kb on - strand at 2021.837 kb on - strand at 2021.837 kb on - strand at 2021.837 kb on - strand at 2021.837 kb on - strand at 2021.837 kb on - strand at 2021.837 kb on - strand at 2021.837 kb on - strand at 2021.837 kb on - strand at 2021.837 kb on - strand at 2021.837 kb on - strand at 2021.838 kb on + strand at 2021.838 kb on + strand at 2021.838 kb on + strand at 2021.838 kb on + strand at 2021.838 kb on + strand at 2021.838 kb on + strand at 2021.838 kb on + strand at 2021.838 kb on + strand at 2021.839 kb on - strand at 2021.839 kb on - strand at 2021.839 kb on - strand at 2021.839 kb on - strand at 2021.839 kb on - strand at 2021.839 kb on - strand at 2021.839 kb on - strand at 2021.839 kb on - strand at 2021.851 kb on - strand at 2021.859 kb on + strand at 2021.859 kb on + strand at 2021.860 kb on - strand at 2021.860 kb on - strand at 2021.860 kb on - strand at 2021.860 kb on - strand at 2021.893 kb on + strand at 2021.894 kb on - strand at 2021.930 kb on + strand at 2021.930 kb on + strand at 2021.930 kb on + strand at 2021.931 kb on - strand at 2021.981 kb on - strand at 2022.010 kb on + strand, within PP_1799 at 2022.010 kb on + strand, within PP_1799 at 2022.010 kb on + strand, within PP_1799 at 2022.011 kb on - strand, within PP_1799 at 2022.011 kb on - strand, within PP_1799 at 2022.011 kb on - strand, within PP_1799 at 2022.019 kb on + strand, within PP_1799 at 2022.019 kb on + strand, within PP_1799 at 2022.028 kb on + strand, within PP_1799 at 2022.028 kb on + strand, within PP_1799 at 2022.028 kb on + strand, within PP_1799 at 2022.028 kb on + strand, within PP_1799 at 2022.028 kb on + strand, within PP_1799 at 2022.029 kb on - strand, within PP_1799 at 2022.029 kb on - strand, within PP_1799 at 2022.029 kb on - strand, within PP_1799 at 2022.036 kb on + strand, within PP_1799 at 2022.036 kb on + strand, within PP_1799 at 2022.049 kb on - strand, within PP_1799 at 2022.049 kb on - strand, within PP_1799 at 2022.072 kb on - strand, within PP_1799 at 2022.072 kb on - strand, within PP_1799 at 2022.072 kb on - strand, within PP_1799 at 2022.109 kb on + strand, within PP_1799 at 2022.109 kb on + strand, within PP_1799 at 2022.110 kb on - strand, within PP_1799 at 2022.170 kb on + strand at 2022.170 kb on + strand, within PP_1799 at 2022.171 kb on - strand, within PP_1799 at 2022.171 kb on - strand, within PP_1799 at 2022.172 kb on + strand, within PP_1799 at 2022.172 kb on + strand, within PP_1799 at 2022.172 kb on + strand, within PP_1799 at 2022.172 kb on + strand, within PP_1799 at 2022.172 kb on + strand, within PP_1799 at 2022.173 kb on - strand, within PP_1799 at 2022.173 kb on - strand, within PP_1799 at 2022.173 kb on - strand, within PP_1799 at 2022.173 kb on - strand, within PP_1799 at 2022.173 kb on - strand, within PP_1799 at 2022.173 kb on - strand, within PP_1799 at 2022.173 kb on - strand, within PP_1799 at 2022.301 kb on + strand, within PP_1799 at 2022.301 kb on + strand, within PP_1799 at 2022.301 kb on + strand, within PP_1799 at 2022.301 kb on + strand, within PP_1799 at 2022.302 kb on - strand, within PP_1799 at 2022.360 kb on + strand, within PP_1799 at 2022.385 kb on + strand, within PP_1799 at 2022.386 kb on - strand, within PP_1799 at 2022.403 kb on + strand, within PP_1799 at 2022.404 kb on - strand, within PP_1799 at 2022.427 kb on + strand, within PP_1799 at 2022.440 kb on - strand, within PP_1799 at 2022.462 kb on + strand, within PP_1799 at 2022.462 kb on + strand, within PP_1799
Per-strain Table
Position Strand Gene LocusTag Fraction Ethyl decanoate (C) remove 2,019,071 - PP_1797 0.26 -0.1 2,019,071 - PP_1797 0.26 -0.4 2,019,126 + PP_1797 0.30 -0.5 2,019,127 - PP_1797 0.30 +0.2 2,019,136 + PP_1797 0.31 +0.8 2,019,312 - PP_1797 0.44 +0.2 2,019,439 + PP_1797 0.54 -0.7 2,019,439 + PP_1797 0.54 -0.5 2,019,440 - +1.3 2,019,440 - PP_1797 0.54 +0.2 2,019,674 - PP_1797 0.71 -0.6 2,019,823 + PP_1797 0.83 -0.2 2,019,824 - PP_1797 0.83 +0.4 2,019,824 - PP_1797 0.83 +0.2 2,019,878 + PP_1797 0.87 -0.1 2,019,878 + PP_1797 0.87 -0.1 2,019,878 + PP_1797 0.87 +0.1 2,019,878 + PP_1797 0.87 -1.8 2,019,878 + PP_1797 0.87 +0.3 2,019,878 + PP_1797 0.87 -0.1 2,019,879 - PP_1797 0.87 -0.1 2,019,879 - PP_1797 0.87 -0.0 2,019,881 + PP_1797 0.87 -0.2 2,019,881 + PP_1797 0.87 -0.6 2,019,881 + PP_1797 0.87 -0.2 2,019,881 + PP_1797 0.87 +0.6 2,019,881 + PP_1797 0.87 -0.7 2,019,881 + PP_1797 0.87 -0.6 2,019,998 + +0.4 2,019,998 + -0.9 2,020,110 + -0.1 2,020,165 + -0.9 2,020,165 + +0.4 2,020,165 + +0.3 2,020,166 - +1.2 2,020,166 - +1.0 2,020,189 + +0.3 2,020,354 + PP_1798 0.22 +0.1 2,020,354 + PP_1798 0.22 -0.0 2,020,355 - PP_1798 0.22 -0.9 2,020,355 - PP_1798 0.22 +0.4 2,020,355 - PP_1798 0.22 +0.3 2,020,357 - PP_1798 0.22 -1.0 2,020,357 - PP_1798 0.22 +1.3 2,020,357 - PP_1798 0.22 -1.0 2,020,369 + PP_1798 0.23 +0.2 2,020,397 - PP_1798 0.25 -0.4 2,020,420 + PP_1798 0.26 -0.5 2,020,485 + PP_1798 0.31 +0.1 2,020,485 + PP_1798 0.31 +1.0 2,020,486 - PP_1798 0.31 -0.2 2,020,507 + PP_1798 0.32 -0.8 2,020,508 - PP_1798 0.32 -0.3 2,020,700 + PP_1798 0.46 +0.2 2,020,760 + PP_1798 0.50 -0.8 2,020,761 - PP_1798 0.50 -2.2 2,020,894 - PP_1798 0.60 -0.1 2,020,906 + PP_1798 0.61 +0.4 2,020,922 + PP_1798 0.62 -0.0 2,020,954 + PP_1798 0.64 +0.1 2,020,954 + PP_1798 0.64 -0.5 2,020,955 - PP_1798 0.64 +0.1 2,020,955 - PP_1798 0.64 +0.2 2,020,962 + PP_1798 0.65 +0.4 2,020,962 + PP_1798 0.65 -0.4 2,020,963 - PP_1798 0.65 +0.1 2,020,987 + PP_1798 0.66 -0.3 2,020,987 + PP_1798 0.66 +0.1 2,020,987 + PP_1798 0.66 +0.3 2,020,987 + PP_1798 0.66 +0.2 2,020,988 - PP_1798 0.66 +0.4 2,020,988 - PP_1798 0.66 +0.3 2,021,020 + PP_1798 0.69 +0.9 2,021,020 + PP_1798 0.69 +0.8 2,021,021 - PP_1798 0.69 +0.2 2,021,021 - PP_1798 0.69 +1.0 2,021,059 + PP_1798 0.71 -0.4 2,021,060 - PP_1798 0.71 +0.3 2,021,060 - PP_1798 0.71 -0.3 2,021,060 - PP_1798 0.71 -0.0 2,021,060 - PP_1798 0.71 +0.7 2,021,172 + PP_1798 0.79 +0.0 2,021,262 + PP_1798 0.86 -0.8 2,021,262 + PP_1798 0.86 +0.3 2,021,262 + PP_1798 0.86 -0.9 2,021,263 - PP_1798 0.86 -0.7 2,021,263 - PP_1798 0.86 -0.4 2,021,263 - PP_1798 0.86 -0.4 2,021,263 - PP_1798 0.86 +0.3 2,021,315 - PP_1798 0.89 -0.0 2,021,315 - PP_1798 0.89 -0.5 2,021,315 - PP_1798 0.89 +1.5 2,021,323 - -0.8 2,021,325 + +0.7 2,021,325 + -0.2 2,021,326 - -0.3 2,021,326 - -0.7 2,021,523 + -0.4 2,021,634 + +0.4 2,021,634 + +1.9 2,021,635 - +0.2 2,021,635 - -1.9 2,021,635 - +1.3 2,021,642 + +0.2 2,021,643 - -1.9 2,021,643 - -0.4 2,021,658 + +0.1 2,021,658 + +0.2 2,021,658 + -0.1 2,021,659 - -0.0 2,021,659 - -0.9 2,021,659 - +0.7 2,021,695 + +0.1 2,021,695 + +0.7 2,021,696 - +0.3 2,021,696 - -0.8 2,021,696 - -0.6 2,021,755 + +2.3 2,021,818 + -1.0 2,021,819 - -0.4 2,021,832 + -0.0 2,021,832 + -0.3 2,021,832 + +1.5 2,021,832 + +0.8 2,021,832 + -0.2 2,021,833 - -0.2 2,021,833 - -1.0 2,021,833 - -0.6 2,021,833 - +0.6 2,021,833 - +0.7 2,021,833 - -1.1 2,021,833 - +1.7 2,021,836 + +0.2 2,021,836 + -0.4 2,021,836 + -0.2 2,021,836 + -0.1 2,021,836 + +0.6 2,021,836 + +0.0 2,021,836 + -0.1 2,021,837 - -0.4 2,021,837 - -0.1 2,021,837 - -0.3 2,021,837 - -1.7 2,021,837 - -0.4 2,021,837 - +0.2 2,021,837 - +0.2 2,021,837 - +0.1 2,021,837 - -0.9 2,021,837 - -0.6 2,021,837 - -0.4 2,021,838 + -0.6 2,021,838 + -0.3 2,021,838 + -0.1 2,021,838 + +0.5 2,021,838 + -0.5 2,021,838 + +0.0 2,021,838 + +0.1 2,021,838 + +1.3 2,021,839 - -1.4 2,021,839 - -0.1 2,021,839 - +0.2 2,021,839 - -1.0 2,021,839 - -0.5 2,021,839 - -1.7 2,021,839 - +0.3 2,021,839 - +1.3 2,021,851 - -0.3 2,021,859 + +0.4 2,021,859 + -0.5 2,021,860 - -0.4 2,021,860 - -0.4 2,021,860 - -0.8 2,021,860 - -1.1 2,021,893 + -0.1 2,021,894 - -0.9 2,021,930 + -0.2 2,021,930 + +2.3 2,021,930 + +1.8 2,021,931 - -0.1 2,021,981 - +0.1 2,022,010 + PP_1799 0.10 -0.2 2,022,010 + PP_1799 0.10 -0.5 2,022,010 + PP_1799 0.10 +1.3 2,022,011 - PP_1799 0.10 -0.5 2,022,011 - PP_1799 0.10 +0.3 2,022,011 - PP_1799 0.10 -0.9 2,022,019 + PP_1799 0.11 +0.4 2,022,019 + PP_1799 0.11 -1.9 2,022,028 + PP_1799 0.12 +0.3 2,022,028 + PP_1799 0.12 +0.3 2,022,028 + PP_1799 0.12 -0.0 2,022,028 + PP_1799 0.12 -1.3 2,022,028 + PP_1799 0.12 +0.4 2,022,029 - PP_1799 0.12 -1.0 2,022,029 - PP_1799 0.12 -0.7 2,022,029 - PP_1799 0.12 +0.8 2,022,036 + PP_1799 0.13 -2.5 2,022,036 + PP_1799 0.13 -0.8 2,022,049 - PP_1799 0.14 -1.4 2,022,049 - PP_1799 0.14 +0.1 2,022,072 - PP_1799 0.16 -0.3 2,022,072 - PP_1799 0.16 +0.2 2,022,072 - PP_1799 0.16 +0.1 2,022,109 + PP_1799 0.19 -0.3 2,022,109 + PP_1799 0.19 -1.5 2,022,110 - PP_1799 0.19 +2.3 2,022,170 + +2.3 2,022,170 + PP_1799 0.25 -0.4 2,022,171 - PP_1799 0.25 -0.0 2,022,171 - PP_1799 0.25 -1.2 2,022,172 + PP_1799 0.25 -0.2 2,022,172 + PP_1799 0.25 -0.6 2,022,172 + PP_1799 0.25 -0.6 2,022,172 + PP_1799 0.25 +0.2 2,022,172 + PP_1799 0.25 +0.6 2,022,173 - PP_1799 0.25 -1.5 2,022,173 - PP_1799 0.25 +0.1 2,022,173 - PP_1799 0.25 -0.7 2,022,173 - PP_1799 0.25 -0.0 2,022,173 - PP_1799 0.25 -0.7 2,022,173 - PP_1799 0.25 +0.7 2,022,173 - PP_1799 0.25 -1.0 2,022,301 + PP_1799 0.37 -1.6 2,022,301 + PP_1799 0.37 -2.0 2,022,301 + PP_1799 0.37 -1.1 2,022,301 + PP_1799 0.37 -0.4 2,022,302 - PP_1799 0.37 +0.2 2,022,360 + PP_1799 0.43 -0.4 2,022,385 + PP_1799 0.45 -0.0 2,022,386 - PP_1799 0.45 -0.7 2,022,403 + PP_1799 0.47 -0.7 2,022,404 - PP_1799 0.47 -2.8 2,022,427 + PP_1799 0.49 -1.2 2,022,440 - PP_1799 0.50 -0.4 2,022,462 + PP_1799 0.52 -0.0 2,022,462 + PP_1799 0.52 -1.0
Or see this region's nucleotide sequence