Strain Fitness in Pseudomonas putida KT2440 around PP_1222

Experiment: Ethyl decanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1221 and PP_1222 overlap by 4 nucleotidesPP_1222 and PP_1223 are separated by 54 nucleotidesPP_1223 and PP_1224 are separated by 6 nucleotides PP_1221: PP_1221 - colicin S4 and filamentous phage transport system, at 1,397,053 to 1,398,171 _1221 PP_1222: PP_1222 - component of the Tol biopolymer transport system, at 1,398,168 to 1,399,469 _1222 PP_1223: PP_1223 - peptidoglycan-associated lipoprotein, at 1,399,524 to 1,400,024 _1223 PP_1224: PP_1224 - periplasmic subunit of the TolQRA transport system, at 1,400,031 to 1,400,837 _1224 Position (kb) 1398 1399 1400Strain fitness (log2 ratio) -3 -2 -1 0 1at 1399.492 kb on + strandat 1399.511 kb on + strandat 1399.511 kb on + strandat 1399.511 kb on + strandat 1400.018 kb on + strandat 1400.018 kb on + strandat 1400.018 kb on + strandat 1400.022 kb on + strandat 1400.022 kb on + strandat 1400.022 kb on + strandat 1400.030 kb on + strandat 1400.036 kb on + strandat 1400.036 kb on + strandat 1400.036 kb on + strandat 1400.036 kb on + strandat 1400.036 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethyl decanoate (C)
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1,399,492 + -0.7
1,399,511 + +0.1
1,399,511 + +0.2
1,399,511 + -1.3
1,400,018 + -3.3
1,400,018 + -3.0
1,400,018 + +0.2
1,400,022 + -1.6
1,400,022 + +0.8
1,400,022 + -1.5
1,400,030 + -1.5
1,400,036 + -1.1
1,400,036 + -1.3
1,400,036 + -0.6
1,400,036 + -1.0
1,400,036 + -1.2

Or see this region's nucleotide sequence