Strain Fitness in Pseudomonas putida KT2440 around PP_1221

Experiment: Ethyl decanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1219 and PP_1220 are separated by 14 nucleotidesPP_1220 and PP_1221 overlap by 1 nucleotidesPP_1221 and PP_1222 overlap by 4 nucleotides PP_1219: PP_1219 - subunit of a proton-driven complex used for maintenance of outer membrane stability, at 1,395,891 to 1,396,586 _1219 PP_1220: PP_1220 - subunit of a proton-driven complex used for maintenance of outer membrane stability, at 1,396,601 to 1,397,053 _1220 PP_1221: PP_1221 - colicin S4 and filamentous phage transport system, at 1,397,053 to 1,398,171 _1221 PP_1222: PP_1222 - component of the Tol biopolymer transport system, at 1,398,168 to 1,399,469 _1222 Position (kb) 1397 1398 1399Strain fitness (log2 ratio) -1 0 1 2at 1396.584 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethyl decanoate (C)
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1,396,584 + +2.4

Or see this region's nucleotide sequence