Experiment: Ethyl decanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0533 and PP_0534 overlap by 1 nucleotides PP_0534 and PP_0535 are separated by 181 nucleotides PP_0535 and PP_0536 are separated by 161 nucleotides
PP_0533: PP_0533 - histidine kinase, at 618,669 to 619,997
_0533
PP_0534: PP_0534 - putative Transcriptional regulator PfeR, at 619,997 to 620,689
_0534
PP_0535: PP_0535 - Outer membrane ferric siderophore receptor, at 620,871 to 623,048
_0535
PP_0536: PP_0536 - conserved protein of unknown function, at 623,210 to 623,680
_0536
Position (kb)
620
621
622
623
624 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 619.888 kb on + strand at 619.888 kb on + strand at 619.888 kb on + strand at 619.888 kb on + strand at 619.889 kb on - strand at 619.889 kb on - strand at 619.889 kb on - strand at 619.893 kb on - strand at 619.893 kb on - strand at 620.026 kb on - strand at 620.026 kb on - strand at 620.026 kb on - strand at 620.026 kb on - strand at 620.131 kb on + strand, within PP_0534 at 620.132 kb on - strand, within PP_0534 at 620.132 kb on - strand, within PP_0534 at 620.134 kb on - strand, within PP_0534 at 620.134 kb on - strand, within PP_0534 at 620.134 kb on - strand, within PP_0534 at 620.158 kb on - strand, within PP_0534 at 620.230 kb on + strand, within PP_0534 at 620.230 kb on + strand, within PP_0534 at 620.231 kb on - strand, within PP_0534 at 620.395 kb on - strand, within PP_0534 at 620.395 kb on - strand, within PP_0534 at 620.564 kb on + strand, within PP_0534 at 620.564 kb on + strand, within PP_0534 at 620.768 kb on - strand at 620.768 kb on - strand at 620.768 kb on - strand at 620.768 kb on - strand at 620.776 kb on + strand at 620.777 kb on - strand at 620.777 kb on - strand at 621.042 kb on + strand at 621.043 kb on - strand at 621.043 kb on - strand at 621.151 kb on - strand, within PP_0535 at 621.162 kb on + strand, within PP_0535 at 621.162 kb on + strand, within PP_0535 at 621.163 kb on - strand, within PP_0535 at 621.163 kb on - strand, within PP_0535 at 621.207 kb on + strand, within PP_0535 at 621.207 kb on + strand, within PP_0535 at 621.208 kb on - strand, within PP_0535 at 621.208 kb on - strand, within PP_0535 at 621.258 kb on + strand, within PP_0535 at 621.271 kb on - strand, within PP_0535 at 621.276 kb on + strand, within PP_0535 at 621.431 kb on - strand, within PP_0535 at 621.477 kb on + strand, within PP_0535 at 621.478 kb on - strand, within PP_0535 at 621.594 kb on + strand, within PP_0535 at 621.594 kb on + strand, within PP_0535 at 621.618 kb on + strand, within PP_0535 at 621.618 kb on + strand, within PP_0535 at 621.618 kb on + strand, within PP_0535 at 621.618 kb on + strand, within PP_0535 at 621.619 kb on - strand, within PP_0535 at 621.619 kb on - strand, within PP_0535 at 621.619 kb on - strand, within PP_0535 at 621.621 kb on + strand, within PP_0535 at 621.621 kb on + strand, within PP_0535 at 621.621 kb on + strand, within PP_0535 at 621.621 kb on + strand, within PP_0535 at 621.622 kb on - strand, within PP_0535 at 621.657 kb on - strand, within PP_0535 at 621.780 kb on + strand, within PP_0535 at 621.780 kb on + strand, within PP_0535 at 621.885 kb on + strand, within PP_0535 at 621.885 kb on + strand, within PP_0535 at 621.885 kb on + strand, within PP_0535 at 621.886 kb on - strand, within PP_0535 at 621.886 kb on - strand, within PP_0535 at 621.886 kb on - strand, within PP_0535 at 621.891 kb on + strand, within PP_0535 at 621.892 kb on - strand, within PP_0535 at 621.892 kb on - strand, within PP_0535 at 621.892 kb on - strand, within PP_0535 at 621.969 kb on + strand, within PP_0535 at 621.970 kb on - strand, within PP_0535 at 621.970 kb on - strand, within PP_0535 at 621.988 kb on - strand, within PP_0535 at 622.044 kb on + strand, within PP_0535 at 622.053 kb on + strand, within PP_0535 at 622.053 kb on + strand, within PP_0535 at 622.053 kb on + strand, within PP_0535 at 622.110 kb on + strand, within PP_0535 at 622.111 kb on - strand, within PP_0535 at 622.146 kb on + strand, within PP_0535 at 622.146 kb on + strand, within PP_0535 at 622.146 kb on + strand, within PP_0535 at 622.146 kb on + strand, within PP_0535 at 622.146 kb on + strand, within PP_0535 at 622.146 kb on + strand, within PP_0535 at 622.146 kb on + strand, within PP_0535 at 622.146 kb on + strand, within PP_0535 at 622.146 kb on + strand, within PP_0535 at 622.147 kb on - strand, within PP_0535 at 622.147 kb on - strand, within PP_0535 at 622.147 kb on - strand, within PP_0535 at 622.147 kb on - strand, within PP_0535 at 622.151 kb on + strand, within PP_0535 at 622.152 kb on - strand, within PP_0535 at 622.179 kb on + strand, within PP_0535 at 622.180 kb on - strand, within PP_0535 at 622.180 kb on - strand, within PP_0535 at 622.270 kb on - strand, within PP_0535 at 622.270 kb on - strand, within PP_0535 at 622.295 kb on + strand, within PP_0535 at 622.296 kb on - strand, within PP_0535 at 622.296 kb on - strand, within PP_0535 at 622.296 kb on - strand, within PP_0535 at 622.353 kb on + strand, within PP_0535 at 622.354 kb on - strand, within PP_0535 at 622.380 kb on + strand, within PP_0535 at 622.380 kb on + strand, within PP_0535 at 622.380 kb on + strand, within PP_0535 at 622.381 kb on - strand, within PP_0535 at 622.381 kb on - strand, within PP_0535 at 622.385 kb on + strand, within PP_0535 at 622.389 kb on + strand, within PP_0535 at 622.389 kb on + strand, within PP_0535 at 622.390 kb on - strand, within PP_0535 at 622.465 kb on - strand, within PP_0535 at 622.488 kb on + strand, within PP_0535 at 622.488 kb on + strand, within PP_0535 at 622.488 kb on + strand, within PP_0535 at 622.488 kb on + strand, within PP_0535 at 622.488 kb on + strand, within PP_0535 at 622.489 kb on - strand, within PP_0535 at 622.489 kb on - strand, within PP_0535 at 622.509 kb on - strand, within PP_0535 at 622.550 kb on + strand, within PP_0535 at 622.560 kb on + strand, within PP_0535 at 622.560 kb on + strand, within PP_0535 at 622.561 kb on - strand, within PP_0535 at 622.561 kb on - strand, within PP_0535 at 622.767 kb on + strand, within PP_0535 at 622.767 kb on + strand, within PP_0535 at 622.768 kb on - strand, within PP_0535 at 622.768 kb on - strand, within PP_0535 at 622.837 kb on - strand at 622.837 kb on - strand at 622.943 kb on + strand at 622.944 kb on - strand at 622.944 kb on - strand at 622.962 kb on + strand at 622.963 kb on - strand at 622.963 kb on - strand at 623.037 kb on + strand at 623.038 kb on - strand at 623.065 kb on + strand at 623.140 kb on + strand at 623.150 kb on - strand at 623.241 kb on - strand at 623.422 kb on + strand, within PP_0536 at 623.491 kb on + strand, within PP_0536 at 623.492 kb on - strand, within PP_0536 at 623.492 kb on - strand, within PP_0536 at 623.552 kb on - strand, within PP_0536 at 623.594 kb on + strand, within PP_0536 at 623.595 kb on - strand, within PP_0536 at 623.683 kb on + strand at 623.684 kb on - strand at 623.697 kb on + strand at 623.857 kb on + strand at 623.857 kb on + strand at 623.858 kb on - strand at 623.860 kb on - strand at 623.977 kb on + strand at 624.025 kb on + strand at 624.025 kb on + strand at 624.025 kb on + strand at 624.025 kb on + strand at 624.026 kb on - strand at 624.047 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethyl decanoate (C) remove 619,888 + +0.1 619,888 + +1.4 619,888 + +0.6 619,888 + -0.3 619,889 - +0.5 619,889 - +0.2 619,889 - -0.8 619,893 - +0.3 619,893 - -2.2 620,026 - -0.4 620,026 - +0.0 620,026 - -0.1 620,026 - -0.0 620,131 + PP_0534 0.19 -0.2 620,132 - PP_0534 0.19 -0.4 620,132 - PP_0534 0.19 +0.1 620,134 - PP_0534 0.20 -0.3 620,134 - PP_0534 0.20 +0.1 620,134 - PP_0534 0.20 -0.4 620,158 - PP_0534 0.23 -0.3 620,230 + PP_0534 0.34 -1.5 620,230 + PP_0534 0.34 -1.0 620,231 - PP_0534 0.34 -0.6 620,395 - PP_0534 0.57 -1.1 620,395 - PP_0534 0.57 +0.7 620,564 + PP_0534 0.82 +0.1 620,564 + PP_0534 0.82 -0.5 620,768 - +0.5 620,768 - +0.1 620,768 - +0.4 620,768 - -0.6 620,776 + +0.2 620,777 - -0.3 620,777 - +0.5 621,042 + +0.4 621,043 - -0.5 621,043 - +0.8 621,151 - PP_0535 0.13 +0.9 621,162 + PP_0535 0.13 -0.6 621,162 + PP_0535 0.13 +1.1 621,163 - PP_0535 0.13 -0.8 621,163 - PP_0535 0.13 -0.3 621,207 + PP_0535 0.15 -0.0 621,207 + PP_0535 0.15 +0.1 621,208 - PP_0535 0.15 -0.3 621,208 - PP_0535 0.15 +0.3 621,258 + PP_0535 0.18 -1.9 621,271 - PP_0535 0.18 +0.2 621,276 + PP_0535 0.19 -1.2 621,431 - PP_0535 0.26 -0.4 621,477 + PP_0535 0.28 -1.5 621,478 - PP_0535 0.28 -0.5 621,594 + PP_0535 0.33 +0.1 621,594 + PP_0535 0.33 +0.3 621,618 + PP_0535 0.34 +1.0 621,618 + PP_0535 0.34 +0.2 621,618 + PP_0535 0.34 +1.3 621,618 + PP_0535 0.34 +0.1 621,619 - PP_0535 0.34 -0.7 621,619 - PP_0535 0.34 -0.5 621,619 - PP_0535 0.34 +0.1 621,621 + PP_0535 0.34 +0.5 621,621 + PP_0535 0.34 -0.2 621,621 + PP_0535 0.34 -0.1 621,621 + PP_0535 0.34 +1.0 621,622 - PP_0535 0.34 +1.1 621,657 - PP_0535 0.36 -0.2 621,780 + PP_0535 0.42 -0.5 621,780 + PP_0535 0.42 -0.5 621,885 + PP_0535 0.47 +0.7 621,885 + PP_0535 0.47 -0.1 621,885 + PP_0535 0.47 +1.1 621,886 - PP_0535 0.47 -0.1 621,886 - PP_0535 0.47 -0.1 621,886 - PP_0535 0.47 -1.6 621,891 + PP_0535 0.47 -0.1 621,892 - PP_0535 0.47 -2.1 621,892 - PP_0535 0.47 +0.2 621,892 - PP_0535 0.47 -0.0 621,969 + PP_0535 0.50 +1.2 621,970 - PP_0535 0.50 -0.2 621,970 - PP_0535 0.50 +1.1 621,988 - PP_0535 0.51 +0.2 622,044 + PP_0535 0.54 -1.9 622,053 + PP_0535 0.54 -0.1 622,053 + PP_0535 0.54 +0.5 622,053 + PP_0535 0.54 +0.3 622,110 + PP_0535 0.57 -0.1 622,111 - PP_0535 0.57 +0.2 622,146 + PP_0535 0.59 +0.0 622,146 + PP_0535 0.59 -0.7 622,146 + PP_0535 0.59 +0.5 622,146 + PP_0535 0.59 -2.2 622,146 + PP_0535 0.59 +1.1 622,146 + PP_0535 0.59 -0.5 622,146 + PP_0535 0.59 -2.3 622,146 + PP_0535 0.59 -0.0 622,146 + PP_0535 0.59 +1.5 622,147 - PP_0535 0.59 -0.2 622,147 - PP_0535 0.59 -0.5 622,147 - PP_0535 0.59 +1.2 622,147 - PP_0535 0.59 -0.2 622,151 + PP_0535 0.59 +0.4 622,152 - PP_0535 0.59 -0.9 622,179 + PP_0535 0.60 +0.3 622,180 - PP_0535 0.60 +0.2 622,180 - PP_0535 0.60 -0.9 622,270 - PP_0535 0.64 -0.8 622,270 - PP_0535 0.64 -0.4 622,295 + PP_0535 0.65 -1.5 622,296 - PP_0535 0.65 +0.3 622,296 - PP_0535 0.65 +0.1 622,296 - PP_0535 0.65 +0.7 622,353 + PP_0535 0.68 -0.6 622,354 - PP_0535 0.68 -0.1 622,380 + PP_0535 0.69 -0.3 622,380 + PP_0535 0.69 -0.4 622,380 + PP_0535 0.69 +0.2 622,381 - PP_0535 0.69 -0.2 622,381 - PP_0535 0.69 +0.3 622,385 + PP_0535 0.70 -0.3 622,389 + PP_0535 0.70 -0.4 622,389 + PP_0535 0.70 -0.4 622,390 - PP_0535 0.70 -0.5 622,465 - PP_0535 0.73 +1.3 622,488 + PP_0535 0.74 -0.3 622,488 + PP_0535 0.74 +0.1 622,488 + PP_0535 0.74 -0.4 622,488 + PP_0535 0.74 -1.2 622,488 + PP_0535 0.74 -0.5 622,489 - PP_0535 0.74 -0.7 622,489 - PP_0535 0.74 +1.0 622,509 - PP_0535 0.75 -0.3 622,550 + PP_0535 0.77 -0.7 622,560 + PP_0535 0.78 -2.1 622,560 + PP_0535 0.78 -0.8 622,561 - PP_0535 0.78 +1.5 622,561 - PP_0535 0.78 +0.1 622,767 + PP_0535 0.87 +1.3 622,767 + PP_0535 0.87 -0.0 622,768 - PP_0535 0.87 -0.2 622,768 - PP_0535 0.87 +0.6 622,837 - -0.3 622,837 - +0.9 622,943 + +0.1 622,944 - -0.1 622,944 - -0.2 622,962 + -0.6 622,963 - +0.6 622,963 - -0.9 623,037 + +2.8 623,038 - +0.6 623,065 + +1.3 623,140 + -0.5 623,150 - -1.8 623,241 - -1.1 623,422 + PP_0536 0.45 -0.0 623,491 + PP_0536 0.60 -2.0 623,492 - PP_0536 0.60 +0.0 623,492 - PP_0536 0.60 -0.2 623,552 - PP_0536 0.73 +0.1 623,594 + PP_0536 0.82 +0.7 623,595 - PP_0536 0.82 +0.4 623,683 + -0.3 623,684 - -0.1 623,697 + -0.7 623,857 + -0.7 623,857 + -0.1 623,858 - -0.0 623,860 - -0.2 623,977 + -0.7 624,025 + +0.2 624,025 + +0.2 624,025 + -0.1 624,025 + +0.8 624,026 - +0.4 624,047 - -0.4
Or see this region's nucleotide sequence