Strain Fitness in Pseudomonas putida KT2440 around PP_0381

Experiment: Ethyl decanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0379 and PP_0380 are separated by 78 nucleotidesPP_0380 and PP_0381 are separated by 159 nucleotidesPP_0381 and PP_0382 are separated by 140 nucleotidesPP_0382 and PP_0383 are separated by 14 nucleotides PP_0379: PP_0379 - Coenzyme PQQ synthesis protein B, at 458,943 to 459,854 _0379 PP_0380: PP_0380 - Coenzyme PQQ synthesis protein A, at 459,933 to 460,004 _0380 PP_0381: PP_0381 - Coenzyme PQQ synthesis protein F, at 460,164 to 462,464 _0381 PP_0382: PP_0382 - 5-aminopentanamidase, at 462,605 to 463,399 _0382 PP_0383: PP_0383 - Lysine 2-monooxygenase, at 463,414 to 465,096 _0383 Position (kb) 460 461 462 463Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 459.246 kb on + strand, within PP_0379at 459.246 kb on + strand, within PP_0379at 459.246 kb on + strand, within PP_0379at 459.268 kb on + strand, within PP_0379at 459.268 kb on + strand, within PP_0379at 459.352 kb on + strand, within PP_0379at 459.352 kb on + strand, within PP_0379at 459.700 kb on - strand, within PP_0379at 459.700 kb on - strand, within PP_0379at 459.850 kb on + strandat 459.850 kb on + strandat 459.850 kb on + strandat 459.850 kb on + strandat 459.850 kb on + strandat 459.850 kb on + strandat 459.850 kb on + strandat 459.851 kb on - strandat 459.851 kb on - strandat 459.851 kb on - strandat 459.851 kb on - strandat 459.866 kb on - strandat 459.923 kb on + strandat 459.923 kb on + strandat 459.923 kb on + strandat 459.935 kb on - strandat 459.949 kb on + strand, within PP_0380at 459.949 kb on + strand, within PP_0380at 459.949 kb on + strand, within PP_0380at 459.950 kb on - strandat 459.950 kb on - strand, within PP_0380at 459.985 kb on + strand, within PP_0380at 459.985 kb on + strand, within PP_0380at 459.985 kb on + strand, within PP_0380at 459.985 kb on + strand, within PP_0380at 459.985 kb on + strand, within PP_0380at 459.985 kb on + strand, within PP_0380at 459.986 kb on - strand, within PP_0380at 460.010 kb on + strandat 460.010 kb on + strandat 460.010 kb on + strandat 460.011 kb on - strandat 460.044 kb on - strandat 460.044 kb on - strandat 460.044 kb on - strandat 460.046 kb on + strandat 460.047 kb on - strandat 460.095 kb on + strandat 460.100 kb on + strandat 460.100 kb on + strandat 460.100 kb on + strandat 460.101 kb on - strandat 460.126 kb on + strandat 460.130 kb on + strandat 460.161 kb on + strandat 460.161 kb on + strandat 460.161 kb on + strandat 460.161 kb on + strandat 460.162 kb on - strandat 460.162 kb on - strandat 460.218 kb on + strandat 460.219 kb on - strandat 460.219 kb on - strandat 460.289 kb on + strandat 460.570 kb on - strand, within PP_0381at 460.730 kb on + strand, within PP_0381at 460.731 kb on - strand, within PP_0381at 461.065 kb on + strand, within PP_0381at 461.083 kb on + strand, within PP_0381at 461.084 kb on - strand, within PP_0381at 461.155 kb on - strand, within PP_0381at 461.155 kb on - strand, within PP_0381at 461.168 kb on + strand, within PP_0381at 461.169 kb on - strand, within PP_0381at 461.169 kb on - strand, within PP_0381at 461.178 kb on + strand, within PP_0381at 461.179 kb on - strand, within PP_0381at 461.179 kb on - strand, within PP_0381at 461.194 kb on + strand, within PP_0381at 461.195 kb on - strand, within PP_0381at 461.382 kb on - strand, within PP_0381at 461.611 kb on + strand, within PP_0381at 461.612 kb on - strand, within PP_0381at 461.672 kb on + strand, within PP_0381at 461.696 kb on - strand, within PP_0381at 461.908 kb on + strand, within PP_0381at 461.908 kb on + strand, within PP_0381at 461.972 kb on - strand, within PP_0381at 462.253 kb on + strandat 462.593 kb on + strandat 462.593 kb on + strandat 462.594 kb on - strandat 462.613 kb on + strandat 462.614 kb on - strandat 462.614 kb on - strandat 462.802 kb on - strand, within PP_0382at 462.802 kb on - strand, within PP_0382at 462.810 kb on + strand, within PP_0382at 462.810 kb on + strand, within PP_0382at 462.811 kb on - strand, within PP_0382at 462.812 kb on + strand, within PP_0382at 462.812 kb on + strand, within PP_0382at 462.812 kb on + strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.819 kb on + strand, within PP_0382at 462.819 kb on + strand, within PP_0382at 462.819 kb on + strand, within PP_0382at 462.820 kb on - strand, within PP_0382at 462.820 kb on - strand, within PP_0382at 462.865 kb on + strand, within PP_0382at 462.961 kb on - strand, within PP_0382at 462.961 kb on - strand, within PP_0382at 463.120 kb on - strand, within PP_0382at 463.155 kb on + strand, within PP_0382at 463.156 kb on - strand, within PP_0382at 463.156 kb on - strand, within PP_0382at 463.383 kb on + strandat 463.383 kb on + strandat 463.384 kb on - strandat 463.384 kb on - strandat 463.384 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethyl decanoate (C)
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459,246 + PP_0379 0.33 -2.8
459,246 + PP_0379 0.33 -3.8
459,246 + PP_0379 0.33 -2.7
459,268 + PP_0379 0.36 -2.5
459,268 + PP_0379 0.36 -2.0
459,352 + PP_0379 0.45 +0.2
459,352 + PP_0379 0.45 -2.6
459,700 - PP_0379 0.83 -0.8
459,700 - PP_0379 0.83 -2.3
459,850 + -3.1
459,850 + -1.0
459,850 + -2.5
459,850 + -1.7
459,850 + -2.6
459,850 + -4.9
459,850 + -2.0
459,851 - -2.0
459,851 - -2.2
459,851 - -1.3
459,851 - +2.5
459,866 - +0.4
459,923 + -3.2
459,923 + -1.1
459,923 + -3.1
459,935 - -0.6
459,949 + PP_0380 0.22 -2.3
459,949 + PP_0380 0.22 -4.6
459,949 + PP_0380 0.22 -2.4
459,950 - +1.5
459,950 - PP_0380 0.24 +0.7
459,985 + PP_0380 0.72 -1.0
459,985 + PP_0380 0.72 -2.3
459,985 + PP_0380 0.72 +0.1
459,985 + PP_0380 0.72 -0.9
459,985 + PP_0380 0.72 -0.1
459,985 + PP_0380 0.72 -1.0
459,986 - PP_0380 0.74 +0.5
460,010 + -1.3
460,010 + -1.7
460,010 + -1.5
460,011 - -0.1
460,044 - -0.6
460,044 - +0.5
460,044 - +1.3
460,046 + -0.6
460,047 - -0.0
460,095 + -1.0
460,100 + -0.5
460,100 + -0.4
460,100 + -0.1
460,101 - +1.9
460,126 + -0.3
460,130 + +1.8
460,161 + +0.7
460,161 + +0.7
460,161 + -1.1
460,161 + -0.8
460,162 - -0.4
460,162 - +0.4
460,218 + -0.4
460,219 - -1.9
460,219 - -1.4
460,289 + -2.7
460,570 - PP_0381 0.18 -1.0
460,730 + PP_0381 0.25 -5.1
460,731 - PP_0381 0.25 +1.0
461,065 + PP_0381 0.39 +0.9
461,083 + PP_0381 0.40 -0.1
461,084 - PP_0381 0.40 -3.6
461,155 - PP_0381 0.43 -0.7
461,155 - PP_0381 0.43 -3.2
461,168 + PP_0381 0.44 -2.5
461,169 - PP_0381 0.44 -1.3
461,169 - PP_0381 0.44 -0.4
461,178 + PP_0381 0.44 -1.5
461,179 - PP_0381 0.44 -2.2
461,179 - PP_0381 0.44 -4.0
461,194 + PP_0381 0.45 -4.8
461,195 - PP_0381 0.45 -3.0
461,382 - PP_0381 0.53 -1.7
461,611 + PP_0381 0.63 -2.1
461,612 - PP_0381 0.63 -2.4
461,672 + PP_0381 0.66 -3.6
461,696 - PP_0381 0.67 -1.5
461,908 + PP_0381 0.76 -3.9
461,908 + PP_0381 0.76 -2.3
461,972 - PP_0381 0.79 -0.8
462,253 + -1.9
462,593 + -0.2
462,593 + +0.9
462,594 - +0.9
462,613 + -0.2
462,614 - -1.3
462,614 - +0.6
462,802 - PP_0382 0.25 -0.4
462,802 - PP_0382 0.25 +1.2
462,810 + PP_0382 0.26 +0.2
462,810 + PP_0382 0.26 -2.5
462,811 - PP_0382 0.26 -0.9
462,812 + PP_0382 0.26 +0.9
462,812 + PP_0382 0.26 +0.8
462,812 + PP_0382 0.26 -1.2
462,813 - PP_0382 0.26 +1.2
462,813 - PP_0382 0.26 -0.1
462,813 - PP_0382 0.26 +0.4
462,813 - PP_0382 0.26 -0.1
462,813 - PP_0382 0.26 -0.5
462,813 - PP_0382 0.26 -0.6
462,819 + PP_0382 0.27 +0.6
462,819 + PP_0382 0.27 -0.7
462,819 + PP_0382 0.27 +0.1
462,820 - PP_0382 0.27 -0.3
462,820 - PP_0382 0.27 +0.9
462,865 + PP_0382 0.33 +1.5
462,961 - PP_0382 0.45 +0.1
462,961 - PP_0382 0.45 -0.3
463,120 - PP_0382 0.65 +0.4
463,155 + PP_0382 0.69 +0.1
463,156 - PP_0382 0.69 -2.6
463,156 - PP_0382 0.69 +0.2
463,383 + +0.4
463,383 + -1.3
463,384 - -0.5
463,384 - +1.2
463,384 - +0.3

Or see this region's nucleotide sequence