Strain Fitness in Pseudomonas putida KT2440 around PP_0272

Experiment: Ethyl decanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0270 and PP_0271 are separated by 1 nucleotidesPP_0271 and PP_0272 are separated by 140 nucleotidesPP_0272 and PP_0273 are separated by 65 nucleotidesPP_0273 and PP_5435 are separated by 175 nucleotidesPP_5435 and PP_0274 are separated by 41 nucleotides PP_0270: PP_0270 - Sensor histidine kinase, at 327,882 to 329,249 _0270 PP_0271: PP_0271 - DNA-binding response regulator, at 329,251 to 329,970 _0271 PP_0272: PP_0272 - Outer membrane ferric siderophore receptor, at 330,111 to 332,408 _0272 PP_0273: PP_0273 - conserved protein of unknown function, at 332,474 to 332,686 _0273 PP_5435: PP_5435 - conserved protein of unknown function, at 332,862 to 333,215 _5435 PP_0274: PP_0274 - putative transcriptional regulator containing HTH domain, at 333,257 to 333,730 _0274 Position (kb) 330 331 332 333Strain fitness (log2 ratio) -2 -1 0 1 2at 329.118 kb on + strandat 329.288 kb on + strandat 329.288 kb on + strandat 329.288 kb on + strandat 329.289 kb on - strandat 329.480 kb on + strand, within PP_0271at 329.580 kb on + strand, within PP_0271at 329.580 kb on + strand, within PP_0271at 329.580 kb on + strand, within PP_0271at 329.580 kb on + strand, within PP_0271at 329.580 kb on + strand, within PP_0271at 329.581 kb on - strand, within PP_0271at 329.623 kb on + strand, within PP_0271at 329.624 kb on - strand, within PP_0271at 329.676 kb on - strand, within PP_0271at 329.784 kb on + strand, within PP_0271at 329.785 kb on - strand, within PP_0271at 329.910 kb on - strandat 329.910 kb on - strandat 330.011 kb on + strandat 330.012 kb on - strandat 330.012 kb on - strandat 330.022 kb on - strandat 330.022 kb on - strandat 330.022 kb on - strandat 330.022 kb on - strandat 330.031 kb on + strandat 330.031 kb on + strandat 330.031 kb on + strandat 330.031 kb on + strandat 330.031 kb on + strandat 330.031 kb on + strandat 330.032 kb on - strandat 330.032 kb on - strandat 330.032 kb on - strandat 330.032 kb on - strandat 330.032 kb on - strandat 330.274 kb on + strandat 330.306 kb on + strandat 330.307 kb on - strandat 330.308 kb on + strandat 330.308 kb on + strandat 330.309 kb on - strandat 330.505 kb on - strand, within PP_0272at 330.594 kb on + strand, within PP_0272at 330.711 kb on + strand, within PP_0272at 330.712 kb on - strand, within PP_0272at 330.720 kb on + strand, within PP_0272at 330.721 kb on - strand, within PP_0272at 330.721 kb on - strand, within PP_0272at 330.721 kb on - strand, within PP_0272at 330.721 kb on - strand, within PP_0272at 330.721 kb on - strand, within PP_0272at 330.921 kb on + strand, within PP_0272at 330.922 kb on - strand, within PP_0272at 330.922 kb on - strand, within PP_0272at 330.927 kb on + strand, within PP_0272at 330.927 kb on + strand, within PP_0272at 330.927 kb on + strand, within PP_0272at 330.927 kb on + strand, within PP_0272at 330.927 kb on + strand, within PP_0272at 330.928 kb on - strand, within PP_0272at 330.975 kb on + strand, within PP_0272at 331.044 kb on + strand, within PP_0272at 331.044 kb on + strand, within PP_0272at 331.045 kb on - strand, within PP_0272at 331.185 kb on + strand, within PP_0272at 331.185 kb on + strand, within PP_0272at 331.186 kb on - strand, within PP_0272at 331.186 kb on - strand, within PP_0272at 331.223 kb on - strand, within PP_0272at 331.329 kb on + strand, within PP_0272at 331.330 kb on - strand, within PP_0272at 331.365 kb on + strand, within PP_0272at 331.365 kb on + strand, within PP_0272at 331.366 kb on - strand, within PP_0272at 331.479 kb on + strand, within PP_0272at 331.480 kb on - strand, within PP_0272at 331.542 kb on + strand, within PP_0272at 331.542 kb on + strand, within PP_0272at 331.542 kb on + strand, within PP_0272at 331.542 kb on + strand, within PP_0272at 331.543 kb on - strand, within PP_0272at 331.543 kb on - strand, within PP_0272at 331.608 kb on + strand, within PP_0272at 331.609 kb on - strand, within PP_0272at 331.678 kb on - strand, within PP_0272at 331.692 kb on + strand, within PP_0272at 331.692 kb on + strand, within PP_0272at 331.692 kb on + strand, within PP_0272at 331.693 kb on - strand, within PP_0272at 331.693 kb on - strand, within PP_0272at 331.710 kb on + strand, within PP_0272at 331.710 kb on + strand, within PP_0272at 331.710 kb on + strand, within PP_0272at 331.711 kb on - strand, within PP_0272at 331.711 kb on - strand, within PP_0272at 331.711 kb on - strand, within PP_0272at 331.711 kb on - strand, within PP_0272at 331.711 kb on - strand, within PP_0272at 331.719 kb on + strand, within PP_0272at 331.720 kb on - strand, within PP_0272at 331.720 kb on - strand, within PP_0272at 331.728 kb on + strand, within PP_0272at 331.728 kb on + strand, within PP_0272at 331.728 kb on + strand, within PP_0272at 331.729 kb on - strand, within PP_0272at 331.729 kb on - strand, within PP_0272at 331.736 kb on + strand, within PP_0272at 331.803 kb on + strand, within PP_0272at 331.804 kb on - strand, within PP_0272at 331.814 kb on + strand, within PP_0272at 331.814 kb on + strand, within PP_0272at 331.815 kb on - strand, within PP_0272at 331.860 kb on + strand, within PP_0272at 331.860 kb on + strand, within PP_0272at 331.932 kb on + strand, within PP_0272at 331.933 kb on - strand, within PP_0272at 331.964 kb on + strand, within PP_0272at 332.026 kb on - strand, within PP_0272at 332.026 kb on - strand, within PP_0272at 332.026 kb on - strand, within PP_0272at 332.097 kb on + strand, within PP_0272at 332.192 kb on + strandat 332.192 kb on + strandat 332.192 kb on + strandat 332.193 kb on - strandat 332.196 kb on - strandat 332.265 kb on + strandat 332.265 kb on + strandat 332.266 kb on - strandat 332.325 kb on + strandat 332.326 kb on - strandat 332.326 kb on - strandat 332.326 kb on - strandat 332.326 kb on - strandat 332.326 kb on - strandat 332.326 kb on - strandat 332.326 kb on - strandat 332.328 kb on + strandat 332.328 kb on + strandat 332.329 kb on - strandat 332.329 kb on - strandat 332.329 kb on - strandat 332.329 kb on - strandat 332.329 kb on - strandat 332.329 kb on - strandat 332.346 kb on + strandat 332.346 kb on + strandat 332.347 kb on - strandat 332.347 kb on - strandat 332.376 kb on - strandat 332.475 kb on + strandat 332.476 kb on - strandat 332.487 kb on - strandat 332.616 kb on + strand, within PP_0273at 332.616 kb on + strand, within PP_0273at 332.616 kb on + strand, within PP_0273at 332.617 kb on - strand, within PP_0273at 332.617 kb on - strand, within PP_0273at 332.715 kb on + strandat 332.715 kb on + strandat 332.778 kb on + strandat 332.779 kb on - strandat 332.795 kb on + strandat 332.796 kb on - strandat 332.837 kb on + strandat 332.837 kb on + strandat 332.837 kb on + strandat 332.837 kb on + strandat 332.837 kb on + strandat 332.838 kb on - strandat 332.838 kb on - strandat 332.838 kb on - strandat 332.838 kb on - strandat 332.838 kb on - strandat 332.929 kb on + strand, within PP_5435at 333.081 kb on - strand, within PP_5435at 333.081 kb on - strand, within PP_5435at 333.081 kb on - strand, within PP_5435at 333.081 kb on - strand, within PP_5435at 333.084 kb on + strand, within PP_5435at 333.084 kb on + strand, within PP_5435at 333.084 kb on + strand, within PP_5435at 333.084 kb on + strand, within PP_5435at 333.085 kb on - strand, within PP_5435at 333.085 kb on - strand, within PP_5435at 333.085 kb on - strand, within PP_5435at 333.146 kb on + strand, within PP_5435at 333.153 kb on + strand, within PP_5435at 333.153 kb on + strand, within PP_5435at 333.154 kb on - strand, within PP_5435

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethyl decanoate (C)
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329,118 + -0.3
329,288 + -0.3
329,288 + -0.8
329,288 + +0.7
329,289 - +1.5
329,480 + PP_0271 0.32 -0.1
329,580 + PP_0271 0.46 -0.8
329,580 + PP_0271 0.46 +0.2
329,580 + PP_0271 0.46 +0.9
329,580 + PP_0271 0.46 +0.2
329,580 + PP_0271 0.46 -0.5
329,581 - PP_0271 0.46 +0.6
329,623 + PP_0271 0.52 -0.1
329,624 - PP_0271 0.52 -0.4
329,676 - PP_0271 0.59 -0.9
329,784 + PP_0271 0.74 -0.2
329,785 - PP_0271 0.74 -0.1
329,910 - -0.3
329,910 - +0.4
330,011 + +0.4
330,012 - +1.2
330,012 - +0.7
330,022 - +0.3
330,022 - -0.3
330,022 - -0.7
330,022 - +1.1
330,031 + +1.3
330,031 + -1.2
330,031 + +0.7
330,031 + +0.1
330,031 + +0.6
330,031 + -0.4
330,032 - +0.0
330,032 - -0.0
330,032 - +0.5
330,032 - -0.3
330,032 - -1.0
330,274 + -0.6
330,306 + +0.6
330,307 - -0.2
330,308 + -0.6
330,308 + -0.3
330,309 - -0.0
330,505 - PP_0272 0.17 -0.4
330,594 + PP_0272 0.21 +0.7
330,711 + PP_0272 0.26 -0.7
330,712 - PP_0272 0.26 -0.4
330,720 + PP_0272 0.27 -0.2
330,721 - PP_0272 0.27 -0.1
330,721 - PP_0272 0.27 +0.5
330,721 - PP_0272 0.27 +0.4
330,721 - PP_0272 0.27 -0.9
330,721 - PP_0272 0.27 -0.2
330,921 + PP_0272 0.35 -0.1
330,922 - PP_0272 0.35 -0.2
330,922 - PP_0272 0.35 +0.0
330,927 + PP_0272 0.36 -0.4
330,927 + PP_0272 0.36 -0.3
330,927 + PP_0272 0.36 -0.1
330,927 + PP_0272 0.36 -0.3
330,927 + PP_0272 0.36 +0.1
330,928 - PP_0272 0.36 -0.1
330,975 + PP_0272 0.38 +0.8
331,044 + PP_0272 0.41 -0.2
331,044 + PP_0272 0.41 +0.5
331,045 - PP_0272 0.41 +0.0
331,185 + PP_0272 0.47 +0.4
331,185 + PP_0272 0.47 -0.4
331,186 - PP_0272 0.47 +0.1
331,186 - PP_0272 0.47 +0.0
331,223 - PP_0272 0.48 -0.5
331,329 + PP_0272 0.53 +0.3
331,330 - PP_0272 0.53 -1.0
331,365 + PP_0272 0.55 -0.2
331,365 + PP_0272 0.55 -0.1
331,366 - PP_0272 0.55 +1.5
331,479 + PP_0272 0.60 -0.1
331,480 - PP_0272 0.60 +0.5
331,542 + PP_0272 0.62 -0.8
331,542 + PP_0272 0.62 -0.6
331,542 + PP_0272 0.62 -2.1
331,542 + PP_0272 0.62 -0.4
331,543 - PP_0272 0.62 +0.5
331,543 - PP_0272 0.62 +0.3
331,608 + PP_0272 0.65 +0.7
331,609 - PP_0272 0.65 -0.4
331,678 - PP_0272 0.68 +0.5
331,692 + PP_0272 0.69 -0.5
331,692 + PP_0272 0.69 -0.7
331,692 + PP_0272 0.69 +1.2
331,693 - PP_0272 0.69 +0.5
331,693 - PP_0272 0.69 +0.2
331,710 + PP_0272 0.70 -0.8
331,710 + PP_0272 0.70 -0.8
331,710 + PP_0272 0.70 -0.7
331,711 - PP_0272 0.70 +0.2
331,711 - PP_0272 0.70 +0.4
331,711 - PP_0272 0.70 -1.9
331,711 - PP_0272 0.70 -2.2
331,711 - PP_0272 0.70 -0.2
331,719 + PP_0272 0.70 -0.1
331,720 - PP_0272 0.70 -0.6
331,720 - PP_0272 0.70 -0.8
331,728 + PP_0272 0.70 -0.4
331,728 + PP_0272 0.70 +0.5
331,728 + PP_0272 0.70 +1.1
331,729 - PP_0272 0.70 +0.5
331,729 - PP_0272 0.70 +1.0
331,736 + PP_0272 0.71 -0.6
331,803 + PP_0272 0.74 +0.7
331,804 - PP_0272 0.74 +0.4
331,814 + PP_0272 0.74 -0.1
331,814 + PP_0272 0.74 -0.2
331,815 - PP_0272 0.74 -0.3
331,860 + PP_0272 0.76 +1.2
331,860 + PP_0272 0.76 -1.2
331,932 + PP_0272 0.79 -0.8
331,933 - PP_0272 0.79 +0.6
331,964 + PP_0272 0.81 -0.4
332,026 - PP_0272 0.83 +0.2
332,026 - PP_0272 0.83 +0.6
332,026 - PP_0272 0.83 +0.2
332,097 + PP_0272 0.86 +0.3
332,192 + -0.1
332,192 + +0.8
332,192 + +0.7
332,193 - -0.7
332,196 - +1.1
332,265 + -1.2
332,265 + +0.5
332,266 - -1.1
332,325 + +0.3
332,326 - +1.0
332,326 - +1.5
332,326 - -0.8
332,326 - -0.4
332,326 - -1.2
332,326 - -1.0
332,326 - -0.5
332,328 + -0.5
332,328 + -0.8
332,329 - +0.4
332,329 - -1.1
332,329 - +0.2
332,329 - -0.5
332,329 - -1.5
332,329 - -0.1
332,346 + +0.3
332,346 + +0.8
332,347 - +0.6
332,347 - +1.1
332,376 - -0.4
332,475 + -1.8
332,476 - +2.5
332,487 - +1.5
332,616 + PP_0273 0.67 +0.7
332,616 + PP_0273 0.67 +0.5
332,616 + PP_0273 0.67 +0.7
332,617 - PP_0273 0.67 -2.7
332,617 - PP_0273 0.67 -0.6
332,715 + +0.5
332,715 + -0.2
332,778 + -0.7
332,779 - +1.4
332,795 + -0.3
332,796 - +0.3
332,837 + -0.8
332,837 + -0.4
332,837 + -0.2
332,837 + +0.1
332,837 + -0.8
332,838 - +0.1
332,838 - -0.1
332,838 - -0.5
332,838 - +0.1
332,838 - +0.2
332,929 + PP_5435 0.19 +0.7
333,081 - PP_5435 0.62 -1.8
333,081 - PP_5435 0.62 -1.5
333,081 - PP_5435 0.62 -0.1
333,081 - PP_5435 0.62 -0.6
333,084 + PP_5435 0.63 +0.8
333,084 + PP_5435 0.63 +0.2
333,084 + PP_5435 0.63 +1.5
333,084 + PP_5435 0.63 +0.1
333,085 - PP_5435 0.63 -1.2
333,085 - PP_5435 0.63 -0.5
333,085 - PP_5435 0.63 +0.8
333,146 + PP_5435 0.80 -0.1
333,153 + PP_5435 0.82 -0.7
333,153 + PP_5435 0.82 -0.2
333,154 - PP_5435 0.82 +0.5

Or see this region's nucleotide sequence