Experiment: Ethyl decanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0270 and PP_0271 are separated by 1 nucleotides PP_0271 and PP_0272 are separated by 140 nucleotides PP_0272 and PP_0273 are separated by 65 nucleotides PP_0273 and PP_5435 are separated by 175 nucleotides PP_5435 and PP_0274 are separated by 41 nucleotides
PP_0270: PP_0270 - Sensor histidine kinase, at 327,882 to 329,249
_0270
PP_0271: PP_0271 - DNA-binding response regulator, at 329,251 to 329,970
_0271
PP_0272: PP_0272 - Outer membrane ferric siderophore receptor, at 330,111 to 332,408
_0272
PP_0273: PP_0273 - conserved protein of unknown function, at 332,474 to 332,686
_0273
PP_5435: PP_5435 - conserved protein of unknown function, at 332,862 to 333,215
_5435
PP_0274: PP_0274 - putative transcriptional regulator containing HTH domain, at 333,257 to 333,730
_0274
Position (kb) 330
331
332
333 Strain fitness (log2 ratio) -2
-1
0
1
2 at 329.118 kb on + strand at 329.288 kb on + strand at 329.288 kb on + strand at 329.288 kb on + strand at 329.289 kb on - strand at 329.480 kb on + strand, within PP_0271 at 329.580 kb on + strand, within PP_0271 at 329.580 kb on + strand, within PP_0271 at 329.580 kb on + strand, within PP_0271 at 329.580 kb on + strand, within PP_0271 at 329.580 kb on + strand, within PP_0271 at 329.581 kb on - strand, within PP_0271 at 329.623 kb on + strand, within PP_0271 at 329.624 kb on - strand, within PP_0271 at 329.676 kb on - strand, within PP_0271 at 329.784 kb on + strand, within PP_0271 at 329.785 kb on - strand, within PP_0271 at 329.910 kb on - strand at 329.910 kb on - strand at 330.011 kb on + strand at 330.012 kb on - strand at 330.012 kb on - strand at 330.022 kb on - strand at 330.022 kb on - strand at 330.022 kb on - strand at 330.022 kb on - strand at 330.031 kb on + strand at 330.031 kb on + strand at 330.031 kb on + strand at 330.031 kb on + strand at 330.031 kb on + strand at 330.031 kb on + strand at 330.032 kb on - strand at 330.032 kb on - strand at 330.032 kb on - strand at 330.032 kb on - strand at 330.032 kb on - strand at 330.274 kb on + strand at 330.306 kb on + strand at 330.307 kb on - strand at 330.308 kb on + strand at 330.308 kb on + strand at 330.309 kb on - strand at 330.505 kb on - strand, within PP_0272 at 330.594 kb on + strand, within PP_0272 at 330.711 kb on + strand, within PP_0272 at 330.712 kb on - strand, within PP_0272 at 330.720 kb on + strand, within PP_0272 at 330.721 kb on - strand, within PP_0272 at 330.721 kb on - strand, within PP_0272 at 330.721 kb on - strand, within PP_0272 at 330.721 kb on - strand, within PP_0272 at 330.721 kb on - strand, within PP_0272 at 330.921 kb on + strand, within PP_0272 at 330.922 kb on - strand, within PP_0272 at 330.922 kb on - strand, within PP_0272 at 330.927 kb on + strand, within PP_0272 at 330.927 kb on + strand, within PP_0272 at 330.927 kb on + strand, within PP_0272 at 330.927 kb on + strand, within PP_0272 at 330.927 kb on + strand, within PP_0272 at 330.928 kb on - strand, within PP_0272 at 330.975 kb on + strand, within PP_0272 at 331.044 kb on + strand, within PP_0272 at 331.044 kb on + strand, within PP_0272 at 331.045 kb on - strand, within PP_0272 at 331.185 kb on + strand, within PP_0272 at 331.185 kb on + strand, within PP_0272 at 331.186 kb on - strand, within PP_0272 at 331.186 kb on - strand, within PP_0272 at 331.223 kb on - strand, within PP_0272 at 331.329 kb on + strand, within PP_0272 at 331.330 kb on - strand, within PP_0272 at 331.365 kb on + strand, within PP_0272 at 331.365 kb on + strand, within PP_0272 at 331.366 kb on - strand, within PP_0272 at 331.479 kb on + strand, within PP_0272 at 331.480 kb on - strand, within PP_0272 at 331.542 kb on + strand, within PP_0272 at 331.542 kb on + strand, within PP_0272 at 331.542 kb on + strand, within PP_0272 at 331.542 kb on + strand, within PP_0272 at 331.543 kb on - strand, within PP_0272 at 331.543 kb on - strand, within PP_0272 at 331.608 kb on + strand, within PP_0272 at 331.609 kb on - strand, within PP_0272 at 331.678 kb on - strand, within PP_0272 at 331.692 kb on + strand, within PP_0272 at 331.692 kb on + strand, within PP_0272 at 331.692 kb on + strand, within PP_0272 at 331.693 kb on - strand, within PP_0272 at 331.693 kb on - strand, within PP_0272 at 331.710 kb on + strand, within PP_0272 at 331.710 kb on + strand, within PP_0272 at 331.710 kb on + strand, within PP_0272 at 331.711 kb on - strand, within PP_0272 at 331.711 kb on - strand, within PP_0272 at 331.711 kb on - strand, within PP_0272 at 331.711 kb on - strand, within PP_0272 at 331.711 kb on - strand, within PP_0272 at 331.719 kb on + strand, within PP_0272 at 331.720 kb on - strand, within PP_0272 at 331.720 kb on - strand, within PP_0272 at 331.728 kb on + strand, within PP_0272 at 331.728 kb on + strand, within PP_0272 at 331.728 kb on + strand, within PP_0272 at 331.729 kb on - strand, within PP_0272 at 331.729 kb on - strand, within PP_0272 at 331.736 kb on + strand, within PP_0272 at 331.803 kb on + strand, within PP_0272 at 331.804 kb on - strand, within PP_0272 at 331.814 kb on + strand, within PP_0272 at 331.814 kb on + strand, within PP_0272 at 331.815 kb on - strand, within PP_0272 at 331.860 kb on + strand, within PP_0272 at 331.860 kb on + strand, within PP_0272 at 331.932 kb on + strand, within PP_0272 at 331.933 kb on - strand, within PP_0272 at 331.964 kb on + strand, within PP_0272 at 332.026 kb on - strand, within PP_0272 at 332.026 kb on - strand, within PP_0272 at 332.026 kb on - strand, within PP_0272 at 332.097 kb on + strand, within PP_0272 at 332.192 kb on + strand at 332.192 kb on + strand at 332.192 kb on + strand at 332.193 kb on - strand at 332.196 kb on - strand at 332.265 kb on + strand at 332.265 kb on + strand at 332.266 kb on - strand at 332.325 kb on + strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.328 kb on + strand at 332.328 kb on + strand at 332.329 kb on - strand at 332.329 kb on - strand at 332.329 kb on - strand at 332.329 kb on - strand at 332.329 kb on - strand at 332.329 kb on - strand at 332.346 kb on + strand at 332.346 kb on + strand at 332.347 kb on - strand at 332.347 kb on - strand at 332.376 kb on - strand at 332.475 kb on + strand at 332.476 kb on - strand at 332.487 kb on - strand at 332.616 kb on + strand, within PP_0273 at 332.616 kb on + strand, within PP_0273 at 332.616 kb on + strand, within PP_0273 at 332.617 kb on - strand, within PP_0273 at 332.617 kb on - strand, within PP_0273 at 332.715 kb on + strand at 332.715 kb on + strand at 332.778 kb on + strand at 332.779 kb on - strand at 332.795 kb on + strand at 332.796 kb on - strand at 332.837 kb on + strand at 332.837 kb on + strand at 332.837 kb on + strand at 332.837 kb on + strand at 332.837 kb on + strand at 332.838 kb on - strand at 332.838 kb on - strand at 332.838 kb on - strand at 332.838 kb on - strand at 332.838 kb on - strand at 332.929 kb on + strand, within PP_5435 at 333.081 kb on - strand, within PP_5435 at 333.081 kb on - strand, within PP_5435 at 333.081 kb on - strand, within PP_5435 at 333.081 kb on - strand, within PP_5435 at 333.084 kb on + strand, within PP_5435 at 333.084 kb on + strand, within PP_5435 at 333.084 kb on + strand, within PP_5435 at 333.084 kb on + strand, within PP_5435 at 333.085 kb on - strand, within PP_5435 at 333.085 kb on - strand, within PP_5435 at 333.085 kb on - strand, within PP_5435 at 333.146 kb on + strand, within PP_5435 at 333.153 kb on + strand, within PP_5435 at 333.153 kb on + strand, within PP_5435 at 333.154 kb on - strand, within PP_5435
Per-strain Table
Position Strand Gene LocusTag Fraction Ethyl decanoate (C) remove 329,118 + -0.3 329,288 + -0.3 329,288 + -0.8 329,288 + +0.7 329,289 - +1.5 329,480 + PP_0271 0.32 -0.1 329,580 + PP_0271 0.46 -0.8 329,580 + PP_0271 0.46 +0.2 329,580 + PP_0271 0.46 +0.9 329,580 + PP_0271 0.46 +0.2 329,580 + PP_0271 0.46 -0.5 329,581 - PP_0271 0.46 +0.6 329,623 + PP_0271 0.52 -0.1 329,624 - PP_0271 0.52 -0.4 329,676 - PP_0271 0.59 -0.9 329,784 + PP_0271 0.74 -0.2 329,785 - PP_0271 0.74 -0.1 329,910 - -0.3 329,910 - +0.4 330,011 + +0.4 330,012 - +1.2 330,012 - +0.7 330,022 - +0.3 330,022 - -0.3 330,022 - -0.7 330,022 - +1.1 330,031 + +1.3 330,031 + -1.2 330,031 + +0.7 330,031 + +0.1 330,031 + +0.6 330,031 + -0.4 330,032 - +0.0 330,032 - -0.0 330,032 - +0.5 330,032 - -0.3 330,032 - -1.0 330,274 + -0.6 330,306 + +0.6 330,307 - -0.2 330,308 + -0.6 330,308 + -0.3 330,309 - -0.0 330,505 - PP_0272 0.17 -0.4 330,594 + PP_0272 0.21 +0.7 330,711 + PP_0272 0.26 -0.7 330,712 - PP_0272 0.26 -0.4 330,720 + PP_0272 0.27 -0.2 330,721 - PP_0272 0.27 -0.1 330,721 - PP_0272 0.27 +0.5 330,721 - PP_0272 0.27 +0.4 330,721 - PP_0272 0.27 -0.9 330,721 - PP_0272 0.27 -0.2 330,921 + PP_0272 0.35 -0.1 330,922 - PP_0272 0.35 -0.2 330,922 - PP_0272 0.35 +0.0 330,927 + PP_0272 0.36 -0.4 330,927 + PP_0272 0.36 -0.3 330,927 + PP_0272 0.36 -0.1 330,927 + PP_0272 0.36 -0.3 330,927 + PP_0272 0.36 +0.1 330,928 - PP_0272 0.36 -0.1 330,975 + PP_0272 0.38 +0.8 331,044 + PP_0272 0.41 -0.2 331,044 + PP_0272 0.41 +0.5 331,045 - PP_0272 0.41 +0.0 331,185 + PP_0272 0.47 +0.4 331,185 + PP_0272 0.47 -0.4 331,186 - PP_0272 0.47 +0.1 331,186 - PP_0272 0.47 +0.0 331,223 - PP_0272 0.48 -0.5 331,329 + PP_0272 0.53 +0.3 331,330 - PP_0272 0.53 -1.0 331,365 + PP_0272 0.55 -0.2 331,365 + PP_0272 0.55 -0.1 331,366 - PP_0272 0.55 +1.5 331,479 + PP_0272 0.60 -0.1 331,480 - PP_0272 0.60 +0.5 331,542 + PP_0272 0.62 -0.8 331,542 + PP_0272 0.62 -0.6 331,542 + PP_0272 0.62 -2.1 331,542 + PP_0272 0.62 -0.4 331,543 - PP_0272 0.62 +0.5 331,543 - PP_0272 0.62 +0.3 331,608 + PP_0272 0.65 +0.7 331,609 - PP_0272 0.65 -0.4 331,678 - PP_0272 0.68 +0.5 331,692 + PP_0272 0.69 -0.5 331,692 + PP_0272 0.69 -0.7 331,692 + PP_0272 0.69 +1.2 331,693 - PP_0272 0.69 +0.5 331,693 - PP_0272 0.69 +0.2 331,710 + PP_0272 0.70 -0.8 331,710 + PP_0272 0.70 -0.8 331,710 + PP_0272 0.70 -0.7 331,711 - PP_0272 0.70 +0.2 331,711 - PP_0272 0.70 +0.4 331,711 - PP_0272 0.70 -1.9 331,711 - PP_0272 0.70 -2.2 331,711 - PP_0272 0.70 -0.2 331,719 + PP_0272 0.70 -0.1 331,720 - PP_0272 0.70 -0.6 331,720 - PP_0272 0.70 -0.8 331,728 + PP_0272 0.70 -0.4 331,728 + PP_0272 0.70 +0.5 331,728 + PP_0272 0.70 +1.1 331,729 - PP_0272 0.70 +0.5 331,729 - PP_0272 0.70 +1.0 331,736 + PP_0272 0.71 -0.6 331,803 + PP_0272 0.74 +0.7 331,804 - PP_0272 0.74 +0.4 331,814 + PP_0272 0.74 -0.1 331,814 + PP_0272 0.74 -0.2 331,815 - PP_0272 0.74 -0.3 331,860 + PP_0272 0.76 +1.2 331,860 + PP_0272 0.76 -1.2 331,932 + PP_0272 0.79 -0.8 331,933 - PP_0272 0.79 +0.6 331,964 + PP_0272 0.81 -0.4 332,026 - PP_0272 0.83 +0.2 332,026 - PP_0272 0.83 +0.6 332,026 - PP_0272 0.83 +0.2 332,097 + PP_0272 0.86 +0.3 332,192 + -0.1 332,192 + +0.8 332,192 + +0.7 332,193 - -0.7 332,196 - +1.1 332,265 + -1.2 332,265 + +0.5 332,266 - -1.1 332,325 + +0.3 332,326 - +1.0 332,326 - +1.5 332,326 - -0.8 332,326 - -0.4 332,326 - -1.2 332,326 - -1.0 332,326 - -0.5 332,328 + -0.5 332,328 + -0.8 332,329 - +0.4 332,329 - -1.1 332,329 - +0.2 332,329 - -0.5 332,329 - -1.5 332,329 - -0.1 332,346 + +0.3 332,346 + +0.8 332,347 - +0.6 332,347 - +1.1 332,376 - -0.4 332,475 + -1.8 332,476 - +2.5 332,487 - +1.5 332,616 + PP_0273 0.67 +0.7 332,616 + PP_0273 0.67 +0.5 332,616 + PP_0273 0.67 +0.7 332,617 - PP_0273 0.67 -2.7 332,617 - PP_0273 0.67 -0.6 332,715 + +0.5 332,715 + -0.2 332,778 + -0.7 332,779 - +1.4 332,795 + -0.3 332,796 - +0.3 332,837 + -0.8 332,837 + -0.4 332,837 + -0.2 332,837 + +0.1 332,837 + -0.8 332,838 - +0.1 332,838 - -0.1 332,838 - -0.5 332,838 - +0.1 332,838 - +0.2 332,929 + PP_5435 0.19 +0.7 333,081 - PP_5435 0.62 -1.8 333,081 - PP_5435 0.62 -1.5 333,081 - PP_5435 0.62 -0.1 333,081 - PP_5435 0.62 -0.6 333,084 + PP_5435 0.63 +0.8 333,084 + PP_5435 0.63 +0.2 333,084 + PP_5435 0.63 +1.5 333,084 + PP_5435 0.63 +0.1 333,085 - PP_5435 0.63 -1.2 333,085 - PP_5435 0.63 -0.5 333,085 - PP_5435 0.63 +0.8 333,146 + PP_5435 0.80 -0.1 333,153 + PP_5435 0.82 -0.7 333,153 + PP_5435 0.82 -0.2 333,154 - PP_5435 0.82 +0.5
Or see this region's nucleotide sequence