Experiment: Ethyl decanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0668 and PP_0669 are separated by 90 nucleotides PP_0669 and PP_0670 are separated by 133 nucleotides
PP_0668: PP_0668 - putative Transmembrane sensor, at 775,895 to 776,860
_0668
PP_0669: PP_0669 - Outer membrane ferric siderophore receptor, at 776,951 to 779,383
_0669
PP_0670: PP_0670 - Transporter, bile acid/Na+ symporter family, at 779,517 to 780,470
_0670
Position (kb) 776
777
778
779
780 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 776.043 kb on - strand, within PP_0668 at 776.047 kb on - strand, within PP_0668 at 776.047 kb on - strand, within PP_0668 at 776.047 kb on - strand, within PP_0668 at 776.246 kb on + strand at 776.366 kb on + strand, within PP_0668 at 776.499 kb on + strand, within PP_0668 at 776.500 kb on - strand, within PP_0668 at 776.752 kb on + strand, within PP_0668 at 776.753 kb on - strand, within PP_0668 at 776.824 kb on + strand at 776.825 kb on - strand at 776.920 kb on + strand at 776.920 kb on + strand at 776.920 kb on + strand at 776.921 kb on - strand at 776.921 kb on - strand at 776.921 kb on - strand at 776.921 kb on - strand at 776.921 kb on - strand at 777.009 kb on + strand at 777.202 kb on - strand, within PP_0669 at 777.364 kb on + strand, within PP_0669 at 777.375 kb on - strand, within PP_0669 at 777.375 kb on - strand, within PP_0669 at 777.479 kb on - strand, within PP_0669 at 777.498 kb on + strand, within PP_0669 at 777.498 kb on + strand, within PP_0669 at 777.499 kb on - strand, within PP_0669 at 777.499 kb on - strand, within PP_0669 at 777.499 kb on - strand, within PP_0669 at 777.499 kb on - strand, within PP_0669 at 777.624 kb on - strand, within PP_0669 at 777.634 kb on + strand, within PP_0669 at 777.662 kb on + strand, within PP_0669 at 777.716 kb on - strand, within PP_0669 at 777.807 kb on - strand, within PP_0669 at 777.807 kb on - strand, within PP_0669 at 777.874 kb on + strand, within PP_0669 at 777.874 kb on + strand, within PP_0669 at 777.874 kb on + strand, within PP_0669 at 777.874 kb on + strand, within PP_0669 at 777.875 kb on - strand, within PP_0669 at 777.875 kb on - strand, within PP_0669 at 777.878 kb on + strand, within PP_0669 at 777.879 kb on - strand, within PP_0669 at 777.933 kb on - strand, within PP_0669 at 777.933 kb on - strand, within PP_0669 at 777.933 kb on - strand, within PP_0669 at 777.933 kb on - strand, within PP_0669 at 777.933 kb on - strand, within PP_0669 at 777.985 kb on + strand, within PP_0669 at 777.985 kb on + strand, within PP_0669 at 777.986 kb on - strand, within PP_0669 at 777.989 kb on + strand, within PP_0669 at 777.989 kb on + strand, within PP_0669 at 777.990 kb on - strand, within PP_0669 at 778.014 kb on - strand, within PP_0669 at 778.072 kb on + strand, within PP_0669 at 778.114 kb on + strand, within PP_0669 at 778.141 kb on + strand, within PP_0669 at 778.142 kb on - strand, within PP_0669 at 778.142 kb on - strand, within PP_0669 at 778.214 kb on + strand, within PP_0669 at 778.214 kb on + strand, within PP_0669 at 778.214 kb on + strand, within PP_0669 at 778.214 kb on + strand, within PP_0669 at 778.215 kb on - strand, within PP_0669 at 778.215 kb on - strand, within PP_0669 at 778.215 kb on - strand, within PP_0669 at 778.215 kb on - strand, within PP_0669 at 778.215 kb on - strand, within PP_0669 at 778.215 kb on - strand, within PP_0669 at 778.220 kb on + strand, within PP_0669 at 778.301 kb on + strand, within PP_0669 at 778.383 kb on - strand, within PP_0669 at 778.406 kb on + strand, within PP_0669 at 778.407 kb on - strand, within PP_0669 at 778.407 kb on - strand, within PP_0669 at 778.413 kb on - strand, within PP_0669 at 778.487 kb on + strand, within PP_0669 at 778.487 kb on + strand, within PP_0669 at 778.488 kb on - strand, within PP_0669 at 778.488 kb on - strand, within PP_0669 at 778.517 kb on + strand, within PP_0669 at 778.517 kb on + strand, within PP_0669 at 778.517 kb on + strand, within PP_0669 at 778.518 kb on - strand, within PP_0669 at 778.637 kb on - strand, within PP_0669 at 778.637 kb on - strand, within PP_0669 at 778.637 kb on - strand, within PP_0669 at 778.637 kb on - strand, within PP_0669 at 778.670 kb on + strand, within PP_0669 at 778.670 kb on + strand, within PP_0669 at 778.712 kb on + strand, within PP_0669 at 778.722 kb on - strand, within PP_0669 at 778.722 kb on - strand, within PP_0669 at 778.796 kb on + strand, within PP_0669 at 778.796 kb on + strand, within PP_0669 at 778.797 kb on - strand, within PP_0669 at 778.949 kb on - strand, within PP_0669 at 778.949 kb on - strand, within PP_0669 at 778.992 kb on + strand, within PP_0669 at 778.992 kb on + strand, within PP_0669 at 778.993 kb on - strand, within PP_0669 at 779.004 kb on - strand, within PP_0669 at 779.009 kb on + strand, within PP_0669 at 779.009 kb on + strand, within PP_0669 at 779.009 kb on + strand, within PP_0669 at 779.010 kb on - strand, within PP_0669 at 779.010 kb on - strand, within PP_0669 at 779.010 kb on - strand, within PP_0669 at 779.010 kb on - strand, within PP_0669 at 779.010 kb on - strand, within PP_0669 at 779.024 kb on + strand, within PP_0669 at 779.024 kb on + strand, within PP_0669 at 779.024 kb on + strand, within PP_0669 at 779.148 kb on - strand at 779.148 kb on - strand at 779.148 kb on - strand at 779.189 kb on + strand at 779.210 kb on + strand at 779.210 kb on + strand at 779.210 kb on + strand at 779.210 kb on + strand at 779.237 kb on + strand at 779.238 kb on - strand at 779.238 kb on - strand at 779.267 kb on + strand at 779.267 kb on + strand at 779.267 kb on + strand at 779.267 kb on + strand at 779.268 kb on - strand at 779.298 kb on - strand at 779.301 kb on - strand at 779.325 kb on - strand at 779.382 kb on - strand at 779.390 kb on + strand at 779.390 kb on + strand at 779.493 kb on - strand at 779.499 kb on + strand at 779.499 kb on + strand at 779.499 kb on + strand at 779.499 kb on + strand at 779.499 kb on + strand at 779.499 kb on + strand at 779.499 kb on + strand at 779.500 kb on - strand at 779.500 kb on - strand at 779.500 kb on - strand at 779.500 kb on - strand at 779.500 kb on - strand at 779.500 kb on - strand at 779.500 kb on - strand at 779.544 kb on + strand at 779.544 kb on + strand at 779.545 kb on - strand at 779.545 kb on - strand at 779.545 kb on - strand at 779.548 kb on + strand at 779.548 kb on + strand at 779.548 kb on + strand at 779.548 kb on + strand at 779.548 kb on + strand at 779.548 kb on + strand at 779.549 kb on - strand at 779.549 kb on - strand at 779.549 kb on - strand at 779.549 kb on - strand at 779.571 kb on + strand at 779.767 kb on + strand, within PP_0670 at 779.767 kb on + strand, within PP_0670 at 779.767 kb on + strand, within PP_0670 at 779.767 kb on + strand, within PP_0670 at 779.768 kb on - strand, within PP_0670 at 779.768 kb on - strand, within PP_0670 at 779.769 kb on + strand, within PP_0670 at 779.770 kb on - strand, within PP_0670 at 779.808 kb on + strand, within PP_0670 at 779.809 kb on - strand, within PP_0670 at 779.809 kb on - strand, within PP_0670 at 779.809 kb on - strand, within PP_0670 at 780.037 kb on + strand, within PP_0670 at 780.038 kb on - strand, within PP_0670 at 780.136 kb on + strand, within PP_0670 at 780.136 kb on + strand, within PP_0670 at 780.136 kb on + strand, within PP_0670 at 780.153 kb on - strand, within PP_0670 at 780.309 kb on + strand, within PP_0670 at 780.309 kb on + strand, within PP_0670 at 780.310 kb on - strand, within PP_0670 at 780.310 kb on - strand, within PP_0670 at 780.310 kb on - strand, within PP_0670 at 780.310 kb on - strand, within PP_0670 at 780.329 kb on - strand, within PP_0670 at 780.329 kb on - strand, within PP_0670
Per-strain Table
Position Strand Gene LocusTag Fraction Ethyl decanoate (C) remove 776,043 - PP_0668 0.15 -0.0 776,047 - PP_0668 0.16 -0.5 776,047 - PP_0668 0.16 -0.3 776,047 - PP_0668 0.16 -0.0 776,246 + +1.5 776,366 + PP_0668 0.49 +0.6 776,499 + PP_0668 0.63 -0.6 776,500 - PP_0668 0.63 -0.4 776,752 + PP_0668 0.89 -0.8 776,753 - PP_0668 0.89 +0.6 776,824 + +0.6 776,825 - -0.2 776,920 + +1.7 776,920 + +0.9 776,920 + -0.6 776,921 - -1.4 776,921 - +0.1 776,921 - -0.8 776,921 - -0.9 776,921 - -0.6 777,009 + +0.2 777,202 - PP_0669 0.10 +0.4 777,364 + PP_0669 0.17 -0.1 777,375 - PP_0669 0.17 -0.4 777,375 - PP_0669 0.17 +0.1 777,479 - PP_0669 0.22 -0.0 777,498 + PP_0669 0.22 -1.1 777,498 + PP_0669 0.22 -1.8 777,499 - PP_0669 0.23 +0.2 777,499 - PP_0669 0.23 -0.9 777,499 - PP_0669 0.23 -0.5 777,499 - PP_0669 0.23 +1.6 777,624 - PP_0669 0.28 -0.0 777,634 + PP_0669 0.28 +0.0 777,662 + PP_0669 0.29 -0.2 777,716 - PP_0669 0.31 -0.2 777,807 - PP_0669 0.35 -0.8 777,807 - PP_0669 0.35 -0.1 777,874 + PP_0669 0.38 -0.4 777,874 + PP_0669 0.38 +2.5 777,874 + PP_0669 0.38 -0.8 777,874 + PP_0669 0.38 +1.5 777,875 - PP_0669 0.38 -0.2 777,875 - PP_0669 0.38 -2.3 777,878 + PP_0669 0.38 -0.7 777,879 - PP_0669 0.38 +0.5 777,933 - PP_0669 0.40 -1.1 777,933 - PP_0669 0.40 -0.8 777,933 - PP_0669 0.40 +0.0 777,933 - PP_0669 0.40 +2.5 777,933 - PP_0669 0.40 +0.6 777,985 + PP_0669 0.42 -1.0 777,985 + PP_0669 0.42 -1.9 777,986 - PP_0669 0.43 +1.2 777,989 + PP_0669 0.43 +0.3 777,989 + PP_0669 0.43 -0.3 777,990 - PP_0669 0.43 -0.3 778,014 - PP_0669 0.44 +0.4 778,072 + PP_0669 0.46 -0.6 778,114 + PP_0669 0.48 -0.2 778,141 + PP_0669 0.49 -0.0 778,142 - PP_0669 0.49 -0.6 778,142 - PP_0669 0.49 -0.4 778,214 + PP_0669 0.52 +0.4 778,214 + PP_0669 0.52 +0.0 778,214 + PP_0669 0.52 +0.8 778,214 + PP_0669 0.52 -0.6 778,215 - PP_0669 0.52 -0.1 778,215 - PP_0669 0.52 -0.2 778,215 - PP_0669 0.52 -0.0 778,215 - PP_0669 0.52 -0.1 778,215 - PP_0669 0.52 +2.0 778,215 - PP_0669 0.52 -1.2 778,220 + PP_0669 0.52 -2.0 778,301 + PP_0669 0.55 -1.2 778,383 - PP_0669 0.59 +0.0 778,406 + PP_0669 0.60 -1.2 778,407 - PP_0669 0.60 +0.5 778,407 - PP_0669 0.60 +0.8 778,413 - PP_0669 0.60 +0.1 778,487 + PP_0669 0.63 -1.2 778,487 + PP_0669 0.63 +0.8 778,488 - PP_0669 0.63 -0.5 778,488 - PP_0669 0.63 -0.9 778,517 + PP_0669 0.64 -0.2 778,517 + PP_0669 0.64 -0.2 778,517 + PP_0669 0.64 +0.9 778,518 - PP_0669 0.64 +1.0 778,637 - PP_0669 0.69 +0.2 778,637 - PP_0669 0.69 -0.3 778,637 - PP_0669 0.69 -0.1 778,637 - PP_0669 0.69 -0.7 778,670 + PP_0669 0.71 +0.4 778,670 + PP_0669 0.71 -0.1 778,712 + PP_0669 0.72 +0.5 778,722 - PP_0669 0.73 +0.2 778,722 - PP_0669 0.73 -2.0 778,796 + PP_0669 0.76 -0.1 778,796 + PP_0669 0.76 +1.3 778,797 - PP_0669 0.76 +1.0 778,949 - PP_0669 0.82 +1.8 778,949 - PP_0669 0.82 +0.3 778,992 + PP_0669 0.84 +0.1 778,992 + PP_0669 0.84 +0.5 778,993 - PP_0669 0.84 +0.6 779,004 - PP_0669 0.84 -0.2 779,009 + PP_0669 0.85 -0.8 779,009 + PP_0669 0.85 -1.0 779,009 + PP_0669 0.85 +0.1 779,010 - PP_0669 0.85 +0.6 779,010 - PP_0669 0.85 -0.2 779,010 - PP_0669 0.85 +0.4 779,010 - PP_0669 0.85 +3.5 779,010 - PP_0669 0.85 -0.3 779,024 + PP_0669 0.85 +0.0 779,024 + PP_0669 0.85 -0.3 779,024 + PP_0669 0.85 +0.9 779,148 - +0.6 779,148 - -0.4 779,148 - +0.7 779,189 + -0.2 779,210 + -0.2 779,210 + +0.9 779,210 + +0.8 779,210 + -0.2 779,237 + +0.0 779,238 - -1.0 779,238 - +0.1 779,267 + +0.1 779,267 + +0.6 779,267 + +0.7 779,267 + -0.1 779,268 - +0.3 779,298 - +0.2 779,301 - -0.0 779,325 - -0.4 779,382 - -0.0 779,390 + -0.0 779,390 + -0.9 779,493 - -0.0 779,499 + -0.9 779,499 + +0.2 779,499 + -0.3 779,499 + -0.6 779,499 + -0.8 779,499 + -0.6 779,499 + -0.0 779,500 - -0.1 779,500 - -0.8 779,500 - -0.3 779,500 - -0.7 779,500 - +0.2 779,500 - -0.2 779,500 - -0.1 779,544 + -0.7 779,544 + +1.1 779,545 - +0.4 779,545 - -0.7 779,545 - -0.7 779,548 + +0.1 779,548 + -0.7 779,548 + -1.6 779,548 + +0.7 779,548 + +0.1 779,548 + -0.2 779,549 - +0.0 779,549 - -0.5 779,549 - -0.0 779,549 - -0.1 779,571 + +0.6 779,767 + PP_0670 0.26 -1.4 779,767 + PP_0670 0.26 +0.0 779,767 + PP_0670 0.26 -0.1 779,767 + PP_0670 0.26 -0.6 779,768 - PP_0670 0.26 -0.4 779,768 - PP_0670 0.26 -0.0 779,769 + PP_0670 0.26 +2.4 779,770 - PP_0670 0.27 -0.1 779,808 + PP_0670 0.31 +0.7 779,809 - PP_0670 0.31 -0.7 779,809 - PP_0670 0.31 -2.8 779,809 - PP_0670 0.31 -0.1 780,037 + PP_0670 0.55 -0.3 780,038 - PP_0670 0.55 +0.2 780,136 + PP_0670 0.65 +0.2 780,136 + PP_0670 0.65 +0.4 780,136 + PP_0670 0.65 -0.2 780,153 - PP_0670 0.67 +0.5 780,309 + PP_0670 0.83 +0.2 780,309 + PP_0670 0.83 -0.5 780,310 - PP_0670 0.83 -0.3 780,310 - PP_0670 0.83 +0.0 780,310 - PP_0670 0.83 +0.5 780,310 - PP_0670 0.83 -0.7 780,329 - PP_0670 0.85 +0.1 780,329 - PP_0670 0.85 -0.0
Or see this region's nucleotide sequence