Experiment: 3-Hydroxydecanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5104 and PP_5105 are separated by 54 nucleotides PP_5105 and PP_5106 are separated by 24 nucleotides PP_5106 and PP_5107 are separated by 64 nucleotides PP_5107 and PP_5108 are separated by 198 nucleotides
PP_5104: PP_5104 - thiazole synthase, at 5,825,482 to 5,826,294
_5104
PP_5105: PP_5105 - Sulfur carrier protein ThiS, at 5,826,349 to 5,826,627
_5105
PP_5106: PP_5106 - conserved inner membrane protein, at 5,826,652 to 5,827,023
_5106
PP_5107: PP_5107 - Monofunctional biosynthetic peptidoglycan transglycosylase, at 5,827,088 to 5,827,798
_5107
PP_5108: PP_5108 - RNA polymerase factor sigma-32, at 5,827,997 to 5,828,851
_5108
Position (kb) 5827
5828 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5826.094 kb on + strand, within PP_5104 at 5826.094 kb on + strand, within PP_5104 at 5826.094 kb on + strand, within PP_5104 at 5826.095 kb on - strand, within PP_5104 at 5826.095 kb on - strand, within PP_5104 at 5826.212 kb on + strand, within PP_5104 at 5826.212 kb on + strand, within PP_5104 at 5826.212 kb on + strand, within PP_5104 at 5826.213 kb on - strand at 5826.213 kb on - strand at 5826.628 kb on + strand at 5826.764 kb on + strand, within PP_5106 at 5826.765 kb on - strand, within PP_5106 at 5826.890 kb on + strand, within PP_5106 at 5826.891 kb on - strand, within PP_5106 at 5826.891 kb on - strand, within PP_5106 at 5826.891 kb on - strand at 5827.038 kb on + strand at 5827.049 kb on + strand at 5827.049 kb on + strand at 5827.049 kb on + strand at 5827.049 kb on + strand at 5827.050 kb on - strand at 5827.050 kb on - strand at 5827.050 kb on - strand at 5827.050 kb on - strand at 5827.050 kb on - strand at 5827.051 kb on + strand at 5827.051 kb on + strand at 5827.052 kb on - strand at 5827.052 kb on - strand at 5827.103 kb on - strand at 5827.215 kb on + strand, within PP_5107 at 5827.541 kb on + strand, within PP_5107 at 5827.541 kb on + strand, within PP_5107 at 5827.541 kb on + strand, within PP_5107 at 5827.542 kb on - strand, within PP_5107 at 5827.542 kb on - strand, within PP_5107 at 5827.542 kb on - strand, within PP_5107 at 5827.703 kb on + strand, within PP_5107 at 5827.703 kb on + strand, within PP_5107 at 5827.836 kb on - strand at 5827.901 kb on + strand at 5827.902 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxydecanoic (C) remove 5,826,094 + PP_5104 0.75 -2.8 5,826,094 + PP_5104 0.75 -1.8 5,826,094 + PP_5104 0.75 -0.3 5,826,095 - PP_5104 0.75 -1.7 5,826,095 - PP_5104 0.75 -0.4 5,826,212 + PP_5104 0.90 +0.7 5,826,212 + PP_5104 0.90 -2.2 5,826,212 + PP_5104 0.90 -0.4 5,826,213 - -2.0 5,826,213 - -0.9 5,826,628 + -0.5 5,826,764 + PP_5106 0.30 -2.4 5,826,765 - PP_5106 0.30 -1.1 5,826,890 + PP_5106 0.64 +0.3 5,826,891 - PP_5106 0.64 +1.6 5,826,891 - PP_5106 0.64 -0.5 5,826,891 - +3.9 5,827,038 + +0.2 5,827,049 + -0.6 5,827,049 + +1.4 5,827,049 + -0.8 5,827,049 + -0.2 5,827,050 - +1.1 5,827,050 - +0.4 5,827,050 - +0.2 5,827,050 - +1.6 5,827,050 - -0.5 5,827,051 + -0.7 5,827,051 + +0.1 5,827,052 - -0.5 5,827,052 - -0.2 5,827,103 - -0.8 5,827,215 + PP_5107 0.18 +1.6 5,827,541 + PP_5107 0.64 +1.9 5,827,541 + PP_5107 0.64 +1.1 5,827,541 + PP_5107 0.64 +1.6 5,827,542 - PP_5107 0.64 +0.0 5,827,542 - PP_5107 0.64 -0.4 5,827,542 - PP_5107 0.64 +0.3 5,827,703 + PP_5107 0.86 +1.7 5,827,703 + PP_5107 0.86 +0.4 5,827,836 - +0.2 5,827,901 + -2.2 5,827,902 - +0.4
Or see this region's nucleotide sequence