Strain Fitness in Pseudomonas putida KT2440 around PP_0766

Experiment: 3-Hydroxydecanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0765 and PP_0766 are separated by 25 nucleotidesPP_0766 and PP_0767 are separated by 327 nucleotides PP_0765: PP_0765 - putative adhesin (DUF1302) (from data), at 880,486 to 882,372 _0765 PP_0766: PP_0766 - adhesin-associated sorting protein (DUF1329) (from data), at 882,398 to 883,762 _0766 PP_0767: PP_0767 - Transcriptional regulator, LuxR family, at 884,090 to 886,807 _0767 Position (kb) 882 883 884Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 881.401 kb on + strand, within PP_0765at 881.401 kb on + strand, within PP_0765at 881.401 kb on + strand, within PP_0765at 881.402 kb on - strand, within PP_0765at 881.402 kb on - strand, within PP_0765at 881.402 kb on - strand, within PP_0765at 881.403 kb on + strand, within PP_0765at 881.403 kb on + strand, within PP_0765at 881.403 kb on + strand, within PP_0765at 881.403 kb on + strand, within PP_0765at 881.403 kb on + strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.438 kb on - strand, within PP_0765at 881.449 kb on + strand, within PP_0765at 881.449 kb on + strand, within PP_0765at 881.449 kb on + strand, within PP_0765at 881.449 kb on + strand, within PP_0765at 881.449 kb on + strand, within PP_0765at 881.450 kb on - strand, within PP_0765at 881.450 kb on - strand, within PP_0765at 881.450 kb on - strand, within PP_0765at 881.562 kb on + strand, within PP_0765at 881.563 kb on - strand, within PP_0765at 881.572 kb on + strand, within PP_0765at 881.584 kb on + strand, within PP_0765at 881.605 kb on + strand, within PP_0765at 881.606 kb on - strand, within PP_0765at 881.694 kb on + strand, within PP_0765at 881.695 kb on - strand, within PP_0765at 881.695 kb on - strand, within PP_0765at 881.874 kb on - strand, within PP_0765at 881.874 kb on - strand, within PP_0765at 881.874 kb on - strand, within PP_0765at 881.874 kb on - strand, within PP_0765at 882.079 kb on + strand, within PP_0765at 882.080 kb on - strand, within PP_0765at 882.080 kb on - strand, within PP_0765at 882.128 kb on - strand, within PP_0765at 882.147 kb on + strand, within PP_0765at 882.274 kb on + strandat 882.274 kb on + strandat 882.274 kb on + strandat 882.274 kb on + strandat 882.275 kb on - strandat 882.275 kb on - strandat 882.275 kb on - strandat 882.276 kb on + strandat 882.293 kb on - strandat 882.316 kb on + strandat 882.316 kb on + strandat 882.317 kb on - strandat 882.317 kb on - strandat 882.370 kb on + strandat 882.370 kb on + strandat 882.371 kb on - strandat 882.371 kb on - strandat 882.371 kb on - strandat 882.376 kb on + strandat 882.376 kb on + strandat 882.376 kb on + strandat 882.376 kb on + strandat 882.376 kb on + strandat 882.377 kb on - strandat 882.675 kb on - strand, within PP_0766at 882.675 kb on - strand, within PP_0766at 882.675 kb on - strand, within PP_0766at 882.732 kb on - strand, within PP_0766at 882.732 kb on - strand, within PP_0766at 882.818 kb on - strand, within PP_0766at 882.990 kb on + strand, within PP_0766at 882.990 kb on + strand, within PP_0766at 882.991 kb on - strand, within PP_0766at 882.991 kb on - strand, within PP_0766at 882.992 kb on + strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 883.035 kb on - strand, within PP_0766at 883.035 kb on - strand, within PP_0766at 883.067 kb on + strand, within PP_0766at 883.068 kb on - strand, within PP_0766at 883.068 kb on - strand, within PP_0766at 883.068 kb on - strand, within PP_0766at 883.068 kb on - strand, within PP_0766at 883.084 kb on + strand, within PP_0766at 883.169 kb on + strand, within PP_0766at 883.169 kb on + strand, within PP_0766at 883.170 kb on - strand, within PP_0766at 883.215 kb on - strand, within PP_0766at 883.249 kb on + strand, within PP_0766at 883.249 kb on + strand, within PP_0766at 883.250 kb on - strand, within PP_0766at 883.325 kb on + strand, within PP_0766at 883.325 kb on + strand, within PP_0766at 883.325 kb on + strand, within PP_0766at 883.326 kb on - strand, within PP_0766at 883.326 kb on - strand, within PP_0766at 883.326 kb on - strand, within PP_0766at 883.370 kb on + strand, within PP_0766at 883.371 kb on - strand, within PP_0766at 883.443 kb on + strand, within PP_0766at 883.444 kb on - strand, within PP_0766at 883.444 kb on - strand, within PP_0766at 883.478 kb on + strand, within PP_0766at 883.478 kb on + strand, within PP_0766at 883.479 kb on - strand, within PP_0766at 883.479 kb on - strand, within PP_0766at 883.479 kb on - strand, within PP_0766at 883.497 kb on - strand, within PP_0766at 883.539 kb on - strand, within PP_0766at 883.589 kb on + strand, within PP_0766at 883.589 kb on + strand, within PP_0766at 883.589 kb on + strand, within PP_0766at 883.590 kb on - strand, within PP_0766at 883.592 kb on + strand, within PP_0766at 883.592 kb on + strand, within PP_0766at 883.592 kb on + strand, within PP_0766at 883.592 kb on + strand, within PP_0766at 883.592 kb on + strand, within PP_0766at 883.593 kb on - strand, within PP_0766at 883.593 kb on - strand, within PP_0766at 883.613 kb on + strand, within PP_0766at 883.613 kb on + strand, within PP_0766at 883.613 kb on + strand, within PP_0766at 883.614 kb on - strand, within PP_0766at 883.614 kb on - strand, within PP_0766at 883.631 kb on + strandat 883.631 kb on + strandat 883.632 kb on - strandat 883.632 kb on - strandat 883.653 kb on - strandat 883.692 kb on - strandat 883.860 kb on + strandat 883.861 kb on - strandat 883.926 kb on + strandat 883.926 kb on + strandat 883.927 kb on - strandat 883.927 kb on - strandat 883.999 kb on - strandat 884.317 kb on + strandat 884.317 kb on + strandat 884.522 kb on - strand, within PP_0767at 884.522 kb on - strand, within PP_0767at 884.549 kb on + strand, within PP_0767at 884.549 kb on + strand, within PP_0767at 884.699 kb on - strand, within PP_0767

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxydecanoic (C)
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881,401 + PP_0765 0.48 -2.5
881,401 + PP_0765 0.48 -2.4
881,401 + PP_0765 0.48 +1.0
881,402 - PP_0765 0.49 -2.8
881,402 - PP_0765 0.49 -2.5
881,402 - PP_0765 0.49 -0.0
881,403 + PP_0765 0.49 -0.9
881,403 + PP_0765 0.49 +0.3
881,403 + PP_0765 0.49 -1.4
881,403 + PP_0765 0.49 -2.0
881,403 + PP_0765 0.49 -0.3
881,404 - PP_0765 0.49 -2.6
881,404 - PP_0765 0.49 +1.3
881,404 - PP_0765 0.49 -1.8
881,404 - PP_0765 0.49 -3.0
881,404 - PP_0765 0.49 -1.9
881,404 - PP_0765 0.49 -1.8
881,404 - PP_0765 0.49 -2.5
881,404 - PP_0765 0.49 -2.4
881,438 - PP_0765 0.50 -2.0
881,449 + PP_0765 0.51 -1.7
881,449 + PP_0765 0.51 -0.5
881,449 + PP_0765 0.51 +2.8
881,449 + PP_0765 0.51 -2.7
881,449 + PP_0765 0.51 -2.4
881,450 - PP_0765 0.51 -2.7
881,450 - PP_0765 0.51 -2.1
881,450 - PP_0765 0.51 -1.0
881,562 + PP_0765 0.57 -1.0
881,563 - PP_0765 0.57 -3.5
881,572 + PP_0765 0.58 -1.6
881,584 + PP_0765 0.58 -1.6
881,605 + PP_0765 0.59 -3.0
881,606 - PP_0765 0.59 +0.4
881,694 + PP_0765 0.64 -1.5
881,695 - PP_0765 0.64 -2.5
881,695 - PP_0765 0.64 -1.4
881,874 - PP_0765 0.74 -2.2
881,874 - PP_0765 0.74 -1.1
881,874 - PP_0765 0.74 -0.8
881,874 - PP_0765 0.74 -1.5
882,079 + PP_0765 0.84 -0.7
882,080 - PP_0765 0.84 -1.0
882,080 - PP_0765 0.84 -1.4
882,128 - PP_0765 0.87 -0.3
882,147 + PP_0765 0.88 -1.6
882,274 + -1.7
882,274 + -1.8
882,274 + +0.7
882,274 + -1.8
882,275 - -1.4
882,275 - -0.3
882,275 - -2.1
882,276 + -1.7
882,293 - +2.8
882,316 + +0.3
882,316 + -0.5
882,317 - +0.8
882,317 - +0.5
882,370 + +0.6
882,370 + -0.9
882,371 - -0.4
882,371 - -1.7
882,371 - -1.4
882,376 + +0.4
882,376 + -0.6
882,376 + -0.5
882,376 + -0.2
882,376 + -1.7
882,377 - -0.9
882,675 - PP_0766 0.20 +1.5
882,675 - PP_0766 0.20 -2.9
882,675 - PP_0766 0.20 +0.4
882,732 - PP_0766 0.24 +0.3
882,732 - PP_0766 0.24 -2.2
882,818 - PP_0766 0.31 -1.0
882,990 + PP_0766 0.43 +0.3
882,990 + PP_0766 0.43 +3.8
882,991 - PP_0766 0.43 -0.4
882,991 - PP_0766 0.43 -0.7
882,992 + PP_0766 0.44 -2.2
882,993 - PP_0766 0.44 -0.9
882,993 - PP_0766 0.44 -1.8
882,993 - PP_0766 0.44 -0.7
882,993 - PP_0766 0.44 -0.1
882,993 - PP_0766 0.44 -0.5
882,993 - PP_0766 0.44 -0.6
883,035 - PP_0766 0.47 -2.8
883,035 - PP_0766 0.47 -0.1
883,067 + PP_0766 0.49 -2.1
883,068 - PP_0766 0.49 -0.1
883,068 - PP_0766 0.49 -2.7
883,068 - PP_0766 0.49 -0.2
883,068 - PP_0766 0.49 +0.3
883,084 + PP_0766 0.50 +0.1
883,169 + PP_0766 0.56 -2.4
883,169 + PP_0766 0.56 -1.0
883,170 - PP_0766 0.57 -1.2
883,215 - PP_0766 0.60 +0.1
883,249 + PP_0766 0.62 -2.0
883,249 + PP_0766 0.62 -2.1
883,250 - PP_0766 0.62 -2.4
883,325 + PP_0766 0.68 -1.3
883,325 + PP_0766 0.68 -2.2
883,325 + PP_0766 0.68 +0.6
883,326 - PP_0766 0.68 +0.3
883,326 - PP_0766 0.68 -1.9
883,326 - PP_0766 0.68 -0.4
883,370 + PP_0766 0.71 +0.5
883,371 - PP_0766 0.71 -0.5
883,443 + PP_0766 0.77 -1.9
883,444 - PP_0766 0.77 +0.6
883,444 - PP_0766 0.77 -0.2
883,478 + PP_0766 0.79 -0.6
883,478 + PP_0766 0.79 -2.0
883,479 - PP_0766 0.79 +0.4
883,479 - PP_0766 0.79 +1.8
883,479 - PP_0766 0.79 -1.2
883,497 - PP_0766 0.81 -2.1
883,539 - PP_0766 0.84 -1.2
883,589 + PP_0766 0.87 +1.0
883,589 + PP_0766 0.87 -0.6
883,589 + PP_0766 0.87 -0.5
883,590 - PP_0766 0.87 -2.9
883,592 + PP_0766 0.87 +3.8
883,592 + PP_0766 0.87 -1.7
883,592 + PP_0766 0.87 -0.9
883,592 + PP_0766 0.87 -0.3
883,592 + PP_0766 0.87 -1.8
883,593 - PP_0766 0.88 -0.2
883,593 - PP_0766 0.88 -0.6
883,613 + PP_0766 0.89 -1.5
883,613 + PP_0766 0.89 -0.4
883,613 + PP_0766 0.89 -1.1
883,614 - PP_0766 0.89 -2.2
883,614 - PP_0766 0.89 -1.5
883,631 + -0.7
883,631 + +0.4
883,632 - +0.1
883,632 - -1.6
883,653 - -2.2
883,692 - -2.1
883,860 + -2.6
883,861 - -1.4
883,926 + +0.5
883,926 + -0.1
883,927 - -0.8
883,927 - -1.2
883,999 - -0.7
884,317 + -2.1
884,317 + -0.6
884,522 - PP_0767 0.16 -0.2
884,522 - PP_0767 0.16 -2.6
884,549 + PP_0767 0.17 +0.4
884,549 + PP_0767 0.17 -0.0
884,699 - PP_0767 0.22 -2.4

Or see this region's nucleotide sequence