Strain Fitness in Pseudomonas putida KT2440 around PP_3822

Experiment: Glutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3821 and PP_3822 are separated by 236 nucleotidesPP_3822 and PP_3823 overlap by 4 nucleotidesPP_3823 and PP_3824 are separated by 74 nucleotides PP_3821: PP_3821 - UTP-glucose-1-phosphate uridylyltransferase, at 4,349,109 to 4,349,948 _3821 PP_3822: PP_3822 - Cytochrome c family protein, at 4,350,185 to 4,351,099 _3822 PP_3823: PP_3823 - Cytochrome c-type protein, at 4,351,096 to 4,351,749 _3823 PP_3824: PP_3824 - conserved exported protein of unknown function, at 4,351,824 to 4,352,204 _3824 Position (kb) 4350 4351 4352Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4349.210 kb on + strand, within PP_3821at 4349.211 kb on - strand, within PP_3821at 4349.211 kb on - strand, within PP_3821at 4349.211 kb on - strand, within PP_3821at 4349.211 kb on - strand, within PP_3821at 4349.211 kb on - strand, within PP_3821at 4349.212 kb on + strand, within PP_3821at 4349.212 kb on + strand, within PP_3821at 4349.212 kb on + strand, within PP_3821at 4349.213 kb on - strand, within PP_3821at 4349.213 kb on - strand, within PP_3821at 4349.213 kb on - strand, within PP_3821at 4349.265 kb on + strand, within PP_3821at 4349.266 kb on - strand, within PP_3821at 4349.266 kb on - strand, within PP_3821at 4349.266 kb on - strand, within PP_3821at 4349.329 kb on + strand, within PP_3821at 4349.329 kb on + strand, within PP_3821at 4349.440 kb on + strand, within PP_3821at 4349.440 kb on + strand, within PP_3821at 4349.440 kb on + strand, within PP_3821at 4349.441 kb on - strand, within PP_3821at 4349.441 kb on - strand, within PP_3821at 4349.441 kb on - strand, within PP_3821at 4349.441 kb on - strand, within PP_3821at 4349.441 kb on - strand, within PP_3821at 4349.495 kb on - strand, within PP_3821at 4349.638 kb on + strand, within PP_3821at 4349.653 kb on + strand, within PP_3821at 4349.654 kb on - strand, within PP_3821at 4349.688 kb on - strand, within PP_3821at 4349.699 kb on - strand, within PP_3821at 4349.699 kb on - strand, within PP_3821at 4349.740 kb on + strand, within PP_3821at 4349.740 kb on + strand, within PP_3821at 4349.740 kb on + strand, within PP_3821at 4349.741 kb on - strand, within PP_3821at 4349.837 kb on - strand, within PP_3821at 4349.948 kb on + strandat 4349.948 kb on + strandat 4349.948 kb on + strandat 4349.948 kb on + strandat 4349.948 kb on + strandat 4349.948 kb on + strandat 4349.948 kb on + strandat 4349.948 kb on + strandat 4349.948 kb on + strandat 4349.948 kb on + strandat 4349.948 kb on + strandat 4349.949 kb on - strandat 4349.949 kb on - strandat 4349.949 kb on - strandat 4349.949 kb on - strandat 4349.949 kb on - strandat 4349.950 kb on + strandat 4349.950 kb on + strandat 4349.950 kb on + strandat 4349.950 kb on + strandat 4349.950 kb on + strandat 4349.950 kb on + strandat 4349.950 kb on + strandat 4349.950 kb on + strandat 4349.951 kb on - strandat 4349.951 kb on - strandat 4349.951 kb on - strandat 4349.951 kb on - strandat 4349.951 kb on - strandat 4349.951 kb on - strandat 4349.951 kb on - strandat 4349.958 kb on + strandat 4349.958 kb on + strandat 4349.959 kb on - strandat 4349.969 kb on - strandat 4349.969 kb on - strandat 4349.993 kb on + strandat 4349.993 kb on + strandat 4349.994 kb on - strandat 4350.013 kb on + strandat 4350.013 kb on + strandat 4350.013 kb on + strandat 4350.013 kb on + strandat 4350.013 kb on + strandat 4350.013 kb on + strandat 4350.014 kb on - strandat 4350.014 kb on - strandat 4350.045 kb on + strandat 4350.045 kb on + strandat 4350.045 kb on + strandat 4350.046 kb on - strandat 4350.046 kb on - strandat 4350.046 kb on - strandat 4350.046 kb on - strandat 4350.051 kb on + strandat 4350.052 kb on - strandat 4350.061 kb on + strandat 4350.061 kb on + strandat 4350.061 kb on + strandat 4350.061 kb on + strandat 4350.061 kb on + strandat 4350.062 kb on - strandat 4350.066 kb on - strandat 4350.081 kb on + strandat 4350.081 kb on + strandat 4350.086 kb on - strandat 4350.086 kb on - strandat 4350.096 kb on + strandat 4350.097 kb on - strandat 4350.097 kb on - strandat 4350.097 kb on - strandat 4350.097 kb on - strandat 4350.097 kb on - strandat 4350.191 kb on - strandat 4350.229 kb on + strandat 4350.229 kb on + strandat 4350.229 kb on + strandat 4350.230 kb on - strandat 4350.234 kb on + strandat 4350.234 kb on + strandat 4350.234 kb on + strandat 4350.293 kb on + strand, within PP_3822at 4350.293 kb on + strand, within PP_3822at 4350.397 kb on - strand, within PP_3822at 4350.397 kb on - strand, within PP_3822at 4350.418 kb on + strand, within PP_3822at 4350.450 kb on + strand, within PP_3822at 4350.450 kb on + strand, within PP_3822at 4350.451 kb on - strand, within PP_3822at 4350.479 kb on + strand, within PP_3822at 4350.479 kb on + strand, within PP_3822at 4350.479 kb on + strandat 4350.479 kb on + strand, within PP_3822at 4350.479 kb on + strand, within PP_3822at 4350.479 kb on + strand, within PP_3822at 4350.479 kb on + strand, within PP_3822at 4350.479 kb on + strand, within PP_3822at 4350.480 kb on - strand, within PP_3822at 4350.480 kb on - strand, within PP_3822at 4350.480 kb on - strand, within PP_3822at 4350.480 kb on - strand, within PP_3822at 4350.480 kb on - strand, within PP_3822at 4350.480 kb on - strand, within PP_3822at 4350.480 kb on - strand, within PP_3822at 4350.483 kb on + strand, within PP_3822at 4350.483 kb on + strand, within PP_3822at 4350.483 kb on + strand, within PP_3822at 4350.484 kb on - strand, within PP_3822at 4350.484 kb on - strand, within PP_3822at 4350.655 kb on - strand, within PP_3822at 4350.655 kb on - strand, within PP_3822at 4350.660 kb on + strand, within PP_3822at 4350.660 kb on + strand, within PP_3822at 4350.661 kb on - strand, within PP_3822at 4350.661 kb on - strand, within PP_3822at 4350.789 kb on + strand, within PP_3822at 4350.799 kb on - strand, within PP_3822at 4350.853 kb on + strand, within PP_3822at 4350.854 kb on - strand, within PP_3822at 4350.854 kb on - strand, within PP_3822at 4350.950 kb on - strand, within PP_3822at 4351.250 kb on + strand, within PP_3823at 4351.250 kb on + strand, within PP_3823at 4351.250 kb on + strand, within PP_3823at 4351.356 kb on - strand, within PP_3823at 4351.439 kb on + strand, within PP_3823at 4351.439 kb on + strand, within PP_3823at 4351.440 kb on - strand, within PP_3823at 4351.440 kb on - strand, within PP_3823at 4351.440 kb on - strand, within PP_3823at 4351.444 kb on - strand, within PP_3823at 4351.547 kb on + strand, within PP_3823at 4351.547 kb on + strand, within PP_3823at 4351.887 kb on - strand, within PP_3824at 4352.055 kb on + strand, within PP_3824at 4352.055 kb on + strand, within PP_3824at 4352.056 kb on - strand, within PP_3824

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Per-strain Table

Position Strand Gene LocusTag Fraction Glutaric (C)
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4,349,210 + PP_3821 0.12 -4.9
4,349,211 - PP_3821 0.12 -3.6
4,349,211 - PP_3821 0.12 -0.8
4,349,211 - PP_3821 0.12 -2.5
4,349,211 - PP_3821 0.12 -3.7
4,349,211 - PP_3821 0.12 -1.2
4,349,212 + PP_3821 0.12 -3.0
4,349,212 + PP_3821 0.12 -2.4
4,349,212 + PP_3821 0.12 -2.5
4,349,213 - PP_3821 0.12 -1.1
4,349,213 - PP_3821 0.12 -4.6
4,349,213 - PP_3821 0.12 -4.1
4,349,265 + PP_3821 0.19 -2.1
4,349,266 - PP_3821 0.19 +0.4
4,349,266 - PP_3821 0.19 -0.8
4,349,266 - PP_3821 0.19 -3.9
4,349,329 + PP_3821 0.26 -2.9
4,349,329 + PP_3821 0.26 +0.4
4,349,440 + PP_3821 0.39 -3.1
4,349,440 + PP_3821 0.39 -4.3
4,349,440 + PP_3821 0.39 -2.3
4,349,441 - PP_3821 0.40 -2.4
4,349,441 - PP_3821 0.40 -4.0
4,349,441 - PP_3821 0.40 +2.4
4,349,441 - PP_3821 0.40 -2.1
4,349,441 - PP_3821 0.40 -0.2
4,349,495 - PP_3821 0.46 +1.4
4,349,638 + PP_3821 0.63 -2.6
4,349,653 + PP_3821 0.65 -3.0
4,349,654 - PP_3821 0.65 -5.4
4,349,688 - PP_3821 0.69 -3.3
4,349,699 - PP_3821 0.70 -0.9
4,349,699 - PP_3821 0.70 -2.4
4,349,740 + PP_3821 0.75 -3.1
4,349,740 + PP_3821 0.75 -0.8
4,349,740 + PP_3821 0.75 -1.2
4,349,741 - PP_3821 0.75 -2.2
4,349,837 - PP_3821 0.87 -1.5
4,349,948 + -3.4
4,349,948 + -4.3
4,349,948 + -2.6
4,349,948 + -3.8
4,349,948 + +0.8
4,349,948 + -0.6
4,349,948 + -2.4
4,349,948 + +0.1
4,349,948 + -3.5
4,349,948 + -1.0
4,349,948 + -3.1
4,349,949 - +0.8
4,349,949 - -1.8
4,349,949 - -2.4
4,349,949 - +0.8
4,349,949 - -0.3
4,349,950 + -2.8
4,349,950 + -2.9
4,349,950 + -1.4
4,349,950 + -2.6
4,349,950 + -1.5
4,349,950 + +0.1
4,349,950 + -5.3
4,349,950 + -2.6
4,349,951 - -1.5
4,349,951 - -0.6
4,349,951 - -1.1
4,349,951 - -1.0
4,349,951 - -1.9
4,349,951 - -2.2
4,349,951 - -1.1
4,349,958 + +0.1
4,349,958 + -0.9
4,349,959 - -0.2
4,349,969 - +1.4
4,349,969 - -0.7
4,349,993 + -1.4
4,349,993 + -1.0
4,349,994 - +0.9
4,350,013 + -1.3
4,350,013 + -0.4
4,350,013 + -2.6
4,350,013 + -1.5
4,350,013 + -4.0
4,350,013 + -2.2
4,350,014 - +0.5
4,350,014 - -0.4
4,350,045 + -0.9
4,350,045 + -0.3
4,350,045 + +0.3
4,350,046 - -0.2
4,350,046 - +0.1
4,350,046 - -0.3
4,350,046 - -0.2
4,350,051 + +0.3
4,350,052 - +0.3
4,350,061 + -0.2
4,350,061 + -0.1
4,350,061 + +0.0
4,350,061 + +0.2
4,350,061 + -0.0
4,350,062 - +1.4
4,350,066 - -0.1
4,350,081 + -0.0
4,350,081 + +0.7
4,350,086 - +0.1
4,350,086 - -0.3
4,350,096 + +0.5
4,350,097 - +1.1
4,350,097 - -0.4
4,350,097 - -0.6
4,350,097 - -0.0
4,350,097 - +1.4
4,350,191 - -0.5
4,350,229 + -0.2
4,350,229 + +1.6
4,350,229 + -0.1
4,350,230 - +0.7
4,350,234 + -0.9
4,350,234 + -0.2
4,350,234 + +0.2
4,350,293 + PP_3822 0.12 -0.6
4,350,293 + PP_3822 0.12 +0.7
4,350,397 - PP_3822 0.23 -0.7
4,350,397 - PP_3822 0.23 +0.5
4,350,418 + PP_3822 0.25 +0.8
4,350,450 + PP_3822 0.29 +0.5
4,350,450 + PP_3822 0.29 -0.3
4,350,451 - PP_3822 0.29 -1.0
4,350,479 + PP_3822 0.32 +0.5
4,350,479 + PP_3822 0.32 +0.5
4,350,479 + +1.4
4,350,479 + PP_3822 0.32 -0.1
4,350,479 + PP_3822 0.32 -0.0
4,350,479 + PP_3822 0.32 -0.0
4,350,479 + PP_3822 0.32 -0.1
4,350,479 + PP_3822 0.32 +0.4
4,350,480 - PP_3822 0.32 -0.5
4,350,480 - PP_3822 0.32 +1.5
4,350,480 - PP_3822 0.32 +1.6
4,350,480 - PP_3822 0.32 +0.0
4,350,480 - PP_3822 0.32 -0.5
4,350,480 - PP_3822 0.32 +0.2
4,350,480 - PP_3822 0.32 -0.0
4,350,483 + PP_3822 0.33 +0.4
4,350,483 + PP_3822 0.33 +0.3
4,350,483 + PP_3822 0.33 +0.3
4,350,484 - PP_3822 0.33 +1.0
4,350,484 - PP_3822 0.33 -1.2
4,350,655 - PP_3822 0.51 +0.4
4,350,655 - PP_3822 0.51 +0.9
4,350,660 + PP_3822 0.52 +1.4
4,350,660 + PP_3822 0.52 -1.0
4,350,661 - PP_3822 0.52 -0.1
4,350,661 - PP_3822 0.52 +0.4
4,350,789 + PP_3822 0.66 +0.5
4,350,799 - PP_3822 0.67 -0.4
4,350,853 + PP_3822 0.73 -0.1
4,350,854 - PP_3822 0.73 +1.2
4,350,854 - PP_3822 0.73 -0.3
4,350,950 - PP_3822 0.84 +0.2
4,351,250 + PP_3823 0.24 -1.7
4,351,250 + PP_3823 0.24 -0.5
4,351,250 + PP_3823 0.24 +1.1
4,351,356 - PP_3823 0.40 -0.1
4,351,439 + PP_3823 0.52 +1.4
4,351,439 + PP_3823 0.52 +1.0
4,351,440 - PP_3823 0.53 -0.7
4,351,440 - PP_3823 0.53 -2.3
4,351,440 - PP_3823 0.53 +0.4
4,351,444 - PP_3823 0.53 +0.2
4,351,547 + PP_3823 0.69 +0.3
4,351,547 + PP_3823 0.69 -1.1
4,351,887 - PP_3824 0.17 +0.4
4,352,055 + PP_3824 0.61 -0.1
4,352,055 + PP_3824 0.61 +0.1
4,352,056 - PP_3824 0.61 +0.2

Or see this region's nucleotide sequence