Strain Fitness in Pseudomonas putida KT2440 around PP_1688

Experiment: Glutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1686 and PP_1687 are separated by 135 nucleotidesPP_1687 and PP_1688 are separated by 75 nucleotidesPP_1688 and PP_1689 are separated by 41 nucleotides PP_1686: PP_1686 - Glutathione peroxidase, at 1,879,208 to 1,879,816 _1686 PP_1687: PP_1687 - conserved exported protein of unknown function, at 1,879,952 to 1,880,251 _1687 PP_1688: PP_1688 - Transcriptional regulator, LysR family, at 1,880,327 to 1,881,256 _1688 PP_1689: PP_1689 - putative Long-chain fatty acid transporter, at 1,881,298 to 1,882,563 _1689 Position (kb) 1880 1881 1882Strain fitness (log2 ratio) -2 -1 0 1 2at 1879.442 kb on + strand, within PP_1686at 1879.443 kb on - strand, within PP_1686at 1879.484 kb on + strand, within PP_1686at 1879.484 kb on + strand, within PP_1686at 1879.485 kb on - strand, within PP_1686at 1879.485 kb on - strand, within PP_1686at 1879.485 kb on - strand, within PP_1686at 1879.485 kb on - strand, within PP_1686at 1879.493 kb on + strand, within PP_1686at 1879.493 kb on + strand, within PP_1686at 1879.494 kb on - strand, within PP_1686at 1879.584 kb on - strand, within PP_1686at 1879.592 kb on + strand, within PP_1686at 1879.592 kb on + strand, within PP_1686at 1879.592 kb on + strand, within PP_1686at 1879.593 kb on - strand, within PP_1686at 1879.593 kb on - strand, within PP_1686at 1879.593 kb on - strand, within PP_1686at 1879.593 kb on - strand, within PP_1686at 1879.593 kb on - strand, within PP_1686at 1879.593 kb on - strand, within PP_1686at 1879.593 kb on - strand, within PP_1686at 1879.700 kb on + strand, within PP_1686at 1879.706 kb on + strand, within PP_1686at 1879.706 kb on + strand, within PP_1686at 1879.706 kb on + strand, within PP_1686at 1879.706 kb on + strand, within PP_1686at 1879.706 kb on + strand, within PP_1686at 1879.706 kb on + strand, within PP_1686at 1879.707 kb on - strand, within PP_1686at 1879.707 kb on - strand, within PP_1686at 1879.707 kb on - strand, within PP_1686at 1879.970 kb on - strandat 1879.973 kb on - strandat 1880.043 kb on + strand, within PP_1687at 1880.044 kb on - strand, within PP_1687at 1880.067 kb on + strand, within PP_1687at 1880.067 kb on + strand, within PP_1687at 1880.067 kb on + strand, within PP_1687at 1880.067 kb on + strand, within PP_1687at 1880.067 kb on + strand, within PP_1687at 1880.068 kb on - strand, within PP_1687at 1880.068 kb on - strand, within PP_1687at 1880.068 kb on - strand, within PP_1687at 1880.068 kb on - strand, within PP_1687at 1880.068 kb on - strand, within PP_1687at 1880.139 kb on + strand, within PP_1687at 1880.139 kb on + strand, within PP_1687at 1880.139 kb on + strand, within PP_1687at 1880.139 kb on + strand, within PP_1687at 1880.139 kb on + strand, within PP_1687at 1880.139 kb on + strand, within PP_1687at 1880.140 kb on - strand, within PP_1687at 1880.140 kb on - strand, within PP_1687at 1880.155 kb on - strand, within PP_1687at 1880.179 kb on + strand, within PP_1687at 1880.246 kb on + strandat 1880.263 kb on - strandat 1880.270 kb on + strandat 1880.271 kb on - strandat 1880.295 kb on + strandat 1880.295 kb on + strandat 1880.347 kb on + strandat 1880.377 kb on + strandat 1880.378 kb on - strandat 1880.463 kb on + strand, within PP_1688at 1880.519 kb on + strand, within PP_1688at 1880.519 kb on + strand, within PP_1688at 1880.520 kb on - strand, within PP_1688at 1880.520 kb on - strand, within PP_1688at 1880.522 kb on + strand, within PP_1688at 1880.523 kb on - strand, within PP_1688at 1880.523 kb on - strand, within PP_1688at 1880.532 kb on + strand, within PP_1688at 1880.533 kb on - strand, within PP_1688at 1880.540 kb on - strand, within PP_1688at 1880.540 kb on - strand, within PP_1688at 1880.658 kb on + strand, within PP_1688at 1880.722 kb on + strand, within PP_1688at 1880.856 kb on + strand, within PP_1688at 1880.982 kb on + strand, within PP_1688at 1880.982 kb on + strand, within PP_1688at 1880.982 kb on + strand, within PP_1688at 1880.982 kb on + strand, within PP_1688at 1880.983 kb on - strand, within PP_1688at 1880.983 kb on - strand, within PP_1688at 1881.122 kb on + strand, within PP_1688at 1881.149 kb on + strand, within PP_1688at 1881.155 kb on + strandat 1881.155 kb on + strand, within PP_1688at 1881.156 kb on - strand, within PP_1688at 1881.156 kb on - strand, within PP_1688at 1881.156 kb on - strand, within PP_1688at 1881.156 kb on - strand, within PP_1688at 1881.156 kb on - strand, within PP_1688at 1881.156 kb on - strand, within PP_1688at 1881.156 kb on - strand, within PP_1688at 1881.156 kb on - strand, within PP_1688at 1881.213 kb on - strandat 1881.285 kb on + strandat 1881.285 kb on + strandat 1881.285 kb on + strandat 1881.285 kb on - strandat 1881.286 kb on - strandat 1881.309 kb on - strandat 1881.309 kb on - strandat 1881.347 kb on + strandat 1881.347 kb on + strandat 1881.347 kb on + strandat 1881.348 kb on - strandat 1881.348 kb on - strandat 1881.360 kb on - strandat 1881.413 kb on + strandat 1881.414 kb on - strandat 1881.414 kb on - strandat 1881.414 kb on - strandat 1881.414 kb on - strandat 1881.414 kb on - strandat 1881.420 kb on - strandat 1881.582 kb on - strand, within PP_1689at 1881.582 kb on - strand, within PP_1689at 1881.582 kb on - strand, within PP_1689at 1881.731 kb on + strand, within PP_1689at 1881.732 kb on - strandat 1881.732 kb on - strand, within PP_1689at 1881.732 kb on - strand, within PP_1689at 1881.893 kb on + strand, within PP_1689at 1881.894 kb on - strand, within PP_1689at 1881.905 kb on - strand, within PP_1689at 1881.928 kb on + strand, within PP_1689at 1881.928 kb on + strand, within PP_1689at 1881.929 kb on - strand, within PP_1689at 1881.947 kb on + strand, within PP_1689at 1881.947 kb on + strand, within PP_1689at 1881.960 kb on + strand, within PP_1689at 1882.024 kb on - strand, within PP_1689at 1882.094 kb on + strand, within PP_1689at 1882.094 kb on + strand, within PP_1689at 1882.095 kb on - strand, within PP_1689at 1882.126 kb on + strand, within PP_1689at 1882.126 kb on + strand, within PP_1689at 1882.127 kb on - strand, within PP_1689at 1882.196 kb on - strand, within PP_1689at 1882.199 kb on + strand, within PP_1689at 1882.199 kb on + strand, within PP_1689at 1882.199 kb on + strand, within PP_1689at 1882.199 kb on + strand, within PP_1689at 1882.199 kb on + strand, within PP_1689at 1882.199 kb on + strand, within PP_1689at 1882.199 kb on + strand, within PP_1689at 1882.199 kb on + strand, within PP_1689at 1882.199 kb on + strand, within PP_1689at 1882.199 kb on + strand, within PP_1689at 1882.200 kb on - strand, within PP_1689at 1882.200 kb on - strand, within PP_1689at 1882.200 kb on - strand, within PP_1689at 1882.200 kb on - strand, within PP_1689at 1882.200 kb on - strand, within PP_1689at 1882.200 kb on - strand, within PP_1689at 1882.200 kb on - strand, within PP_1689at 1882.204 kb on - strand, within PP_1689at 1882.240 kb on + strand, within PP_1689at 1882.240 kb on + strand, within PP_1689at 1882.244 kb on + strand, within PP_1689at 1882.244 kb on + strandat 1882.245 kb on - strand, within PP_1689at 1882.245 kb on - strand, within PP_1689at 1882.245 kb on - strand, within PP_1689at 1882.245 kb on - strand, within PP_1689at 1882.247 kb on + strand, within PP_1689at 1882.248 kb on - strand, within PP_1689

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Per-strain Table

Position Strand Gene LocusTag Fraction Glutaric (C)
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1,879,442 + PP_1686 0.38 -0.6
1,879,443 - PP_1686 0.39 -0.3
1,879,484 + PP_1686 0.45 -0.9
1,879,484 + PP_1686 0.45 -0.0
1,879,485 - PP_1686 0.45 -0.1
1,879,485 - PP_1686 0.45 -0.1
1,879,485 - PP_1686 0.45 +1.1
1,879,485 - PP_1686 0.45 +0.8
1,879,493 + PP_1686 0.47 -0.9
1,879,493 + PP_1686 0.47 -0.4
1,879,494 - PP_1686 0.47 +0.7
1,879,584 - PP_1686 0.62 +1.2
1,879,592 + PP_1686 0.63 +0.8
1,879,592 + PP_1686 0.63 +0.4
1,879,592 + PP_1686 0.63 -0.6
1,879,593 - PP_1686 0.63 +0.5
1,879,593 - PP_1686 0.63 -0.4
1,879,593 - PP_1686 0.63 -0.9
1,879,593 - PP_1686 0.63 +0.6
1,879,593 - PP_1686 0.63 -0.3
1,879,593 - PP_1686 0.63 -0.1
1,879,593 - PP_1686 0.63 -0.6
1,879,700 + PP_1686 0.81 -0.5
1,879,706 + PP_1686 0.82 +0.3
1,879,706 + PP_1686 0.82 -0.1
1,879,706 + PP_1686 0.82 -1.0
1,879,706 + PP_1686 0.82 -0.3
1,879,706 + PP_1686 0.82 +0.6
1,879,706 + PP_1686 0.82 +0.6
1,879,707 - PP_1686 0.82 +0.7
1,879,707 - PP_1686 0.82 +0.3
1,879,707 - PP_1686 0.82 -0.0
1,879,970 - -0.7
1,879,973 - -0.1
1,880,043 + PP_1687 0.30 -1.3
1,880,044 - PP_1687 0.31 -0.4
1,880,067 + PP_1687 0.38 +1.4
1,880,067 + PP_1687 0.38 -1.1
1,880,067 + PP_1687 0.38 -0.8
1,880,067 + PP_1687 0.38 -1.3
1,880,067 + PP_1687 0.38 -0.8
1,880,068 - PP_1687 0.39 -0.2
1,880,068 - PP_1687 0.39 -0.5
1,880,068 - PP_1687 0.39 +0.4
1,880,068 - PP_1687 0.39 -0.8
1,880,068 - PP_1687 0.39 +1.1
1,880,139 + PP_1687 0.62 +0.3
1,880,139 + PP_1687 0.62 -0.3
1,880,139 + PP_1687 0.62 -1.3
1,880,139 + PP_1687 0.62 +2.4
1,880,139 + PP_1687 0.62 +0.4
1,880,139 + PP_1687 0.62 -1.2
1,880,140 - PP_1687 0.63 -0.1
1,880,140 - PP_1687 0.63 -0.4
1,880,155 - PP_1687 0.68 -0.4
1,880,179 + PP_1687 0.76 -0.3
1,880,246 + -0.5
1,880,263 - -0.1
1,880,270 + -0.4
1,880,271 - +0.0
1,880,295 + -0.5
1,880,295 + +0.1
1,880,347 + -0.6
1,880,377 + +0.5
1,880,378 - -0.3
1,880,463 + PP_1688 0.15 -0.2
1,880,519 + PP_1688 0.21 -0.3
1,880,519 + PP_1688 0.21 -0.2
1,880,520 - PP_1688 0.21 +0.3
1,880,520 - PP_1688 0.21 -0.2
1,880,522 + PP_1688 0.21 -0.5
1,880,523 - PP_1688 0.21 -0.7
1,880,523 - PP_1688 0.21 -1.3
1,880,532 + PP_1688 0.22 -0.4
1,880,533 - PP_1688 0.22 +0.2
1,880,540 - PP_1688 0.23 -1.7
1,880,540 - PP_1688 0.23 +0.3
1,880,658 + PP_1688 0.36 +0.4
1,880,722 + PP_1688 0.42 -0.3
1,880,856 + PP_1688 0.57 -0.4
1,880,982 + PP_1688 0.70 -0.3
1,880,982 + PP_1688 0.70 +0.1
1,880,982 + PP_1688 0.70 -0.2
1,880,982 + PP_1688 0.70 -1.4
1,880,983 - PP_1688 0.71 -0.2
1,880,983 - PP_1688 0.71 -1.2
1,881,122 + PP_1688 0.85 -0.6
1,881,149 + PP_1688 0.88 -0.5
1,881,155 + -1.1
1,881,155 + PP_1688 0.89 -0.4
1,881,156 - PP_1688 0.89 -1.6
1,881,156 - PP_1688 0.89 -0.7
1,881,156 - PP_1688 0.89 +0.1
1,881,156 - PP_1688 0.89 -0.1
1,881,156 - PP_1688 0.89 -0.3
1,881,156 - PP_1688 0.89 -1.3
1,881,156 - PP_1688 0.89 +0.4
1,881,156 - PP_1688 0.89 +0.8
1,881,213 - -1.7
1,881,285 + +0.8
1,881,285 + +0.0
1,881,285 + +0.4
1,881,285 - -0.7
1,881,286 - -1.2
1,881,309 - +0.6
1,881,309 - -0.2
1,881,347 + -0.7
1,881,347 + -0.1
1,881,347 + -0.1
1,881,348 - -0.2
1,881,348 - +2.0
1,881,360 - -0.0
1,881,413 + +0.4
1,881,414 - +0.5
1,881,414 - -0.0
1,881,414 - +0.3
1,881,414 - -0.3
1,881,414 - -0.7
1,881,420 - +1.4
1,881,582 - PP_1689 0.22 -0.3
1,881,582 - PP_1689 0.22 -0.1
1,881,582 - PP_1689 0.22 +0.5
1,881,731 + PP_1689 0.34 -0.5
1,881,732 - +2.4
1,881,732 - PP_1689 0.34 +0.0
1,881,732 - PP_1689 0.34 -0.0
1,881,893 + PP_1689 0.47 -0.6
1,881,894 - PP_1689 0.47 +0.6
1,881,905 - PP_1689 0.48 -1.0
1,881,928 + PP_1689 0.50 +0.7
1,881,928 + PP_1689 0.50 +0.5
1,881,929 - PP_1689 0.50 +0.7
1,881,947 + PP_1689 0.51 -1.4
1,881,947 + PP_1689 0.51 +0.3
1,881,960 + PP_1689 0.52 -0.1
1,882,024 - PP_1689 0.57 +1.2
1,882,094 + PP_1689 0.63 -0.1
1,882,094 + PP_1689 0.63 -0.4
1,882,095 - PP_1689 0.63 -0.6
1,882,126 + PP_1689 0.65 +0.5
1,882,126 + PP_1689 0.65 +0.4
1,882,127 - PP_1689 0.65 -0.1
1,882,196 - PP_1689 0.71 +0.3
1,882,199 + PP_1689 0.71 +0.2
1,882,199 + PP_1689 0.71 +0.2
1,882,199 + PP_1689 0.71 +0.4
1,882,199 + PP_1689 0.71 +1.8
1,882,199 + PP_1689 0.71 +0.3
1,882,199 + PP_1689 0.71 +0.0
1,882,199 + PP_1689 0.71 +0.2
1,882,199 + PP_1689 0.71 +0.7
1,882,199 + PP_1689 0.71 -0.2
1,882,199 + PP_1689 0.71 -0.1
1,882,200 - PP_1689 0.71 +0.2
1,882,200 - PP_1689 0.71 -0.8
1,882,200 - PP_1689 0.71 -1.6
1,882,200 - PP_1689 0.71 -0.0
1,882,200 - PP_1689 0.71 -2.5
1,882,200 - PP_1689 0.71 -0.5
1,882,200 - PP_1689 0.71 -0.9
1,882,204 - PP_1689 0.72 -0.0
1,882,240 + PP_1689 0.74 -1.3
1,882,240 + PP_1689 0.74 -0.6
1,882,244 + PP_1689 0.75 -0.8
1,882,244 + +2.4
1,882,245 - PP_1689 0.75 +0.4
1,882,245 - PP_1689 0.75 +1.2
1,882,245 - PP_1689 0.75 -0.3
1,882,245 - PP_1689 0.75 -0.1
1,882,247 + PP_1689 0.75 -0.6
1,882,248 - PP_1689 0.75 -0.0

Or see this region's nucleotide sequence