Experiment: Valerolactone (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0049 and PP_5424 are separated by 12 nucleotides PP_5424 and PP_0050 are separated by 687 nucleotides
PP_0049: PP_0049 - conserved protein of unknown function, at 56,161 to 57,627
_0049
PP_5424: PP_5424 - conserved protein of unknown function, at 57,640 to 58,089
_5424
PP_0050: PP_0050 - conserved exported protein of unknown function, at 58,777 to 59,184
_0050
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 56.641 kb on + strand, within PP_0049 at 56.668 kb on + strand, within PP_0049 at 56.668 kb on + strand, within PP_0049 at 56.669 kb on - strand, within PP_0049 at 56.669 kb on - strand, within PP_0049 at 56.714 kb on + strand, within PP_0049 at 56.714 kb on + strand, within PP_0049 at 56.714 kb on + strand, within PP_0049 at 56.714 kb on + strand, within PP_0049 at 56.714 kb on + strand, within PP_0049 at 56.720 kb on + strand, within PP_0049 at 56.720 kb on + strand, within PP_0049 at 56.720 kb on + strand, within PP_0049 at 56.720 kb on + strand, within PP_0049 at 56.721 kb on - strand, within PP_0049 at 56.796 kb on + strand, within PP_0049 at 56.796 kb on + strand, within PP_0049 at 56.822 kb on + strand, within PP_0049 at 56.991 kb on + strand, within PP_0049 at 56.992 kb on - strand, within PP_0049 at 56.992 kb on - strand, within PP_0049 at 56.992 kb on - strand, within PP_0049 at 57.021 kb on + strand, within PP_0049 at 57.022 kb on - strand, within PP_0049 at 57.064 kb on + strand, within PP_0049 at 57.064 kb on + strand, within PP_0049 at 57.064 kb on + strand, within PP_0049 at 57.065 kb on - strand, within PP_0049 at 57.065 kb on - strand, within PP_0049 at 57.065 kb on - strand, within PP_0049 at 57.065 kb on - strand, within PP_0049 at 57.065 kb on - strand, within PP_0049 at 57.149 kb on + strand, within PP_0049 at 57.150 kb on - strand, within PP_0049 at 57.150 kb on - strand, within PP_0049 at 57.150 kb on - strand, within PP_0049 at 57.150 kb on - strand, within PP_0049 at 57.150 kb on - strand, within PP_0049 at 57.178 kb on - strand, within PP_0049 at 57.197 kb on - strand, within PP_0049 at 57.229 kb on - strand, within PP_0049 at 57.294 kb on + strand, within PP_0049 at 57.294 kb on + strand, within PP_0049 at 57.296 kb on + strand, within PP_0049 at 57.297 kb on - strand, within PP_0049 at 57.297 kb on - strand, within PP_0049 at 57.423 kb on + strand, within PP_0049 at 57.463 kb on - strand, within PP_0049 at 57.527 kb on - strand at 57.637 kb on + strand at 57.637 kb on + strand at 57.637 kb on + strand at 57.637 kb on + strand at 57.638 kb on - strand at 57.638 kb on - strand at 57.641 kb on + strand at 57.641 kb on + strand at 57.641 kb on + strand at 57.642 kb on - strand at 57.782 kb on + strand, within PP_5424 at 57.783 kb on - strand, within PP_5424 at 57.783 kb on - strand, within PP_5424 at 57.917 kb on + strand, within PP_5424 at 57.917 kb on + strand, within PP_5424 at 57.918 kb on - strand, within PP_5424 at 57.918 kb on - strand, within PP_5424 at 57.961 kb on + strand, within PP_5424 at 57.961 kb on + strand, within PP_5424 at 57.961 kb on + strand, within PP_5424 at 57.962 kb on - strand, within PP_5424 at 57.962 kb on - strand, within PP_5424 at 57.962 kb on - strand, within PP_5424 at 57.962 kb on - strand, within PP_5424 at 57.969 kb on + strand, within PP_5424 at 57.969 kb on + strand, within PP_5424 at 57.969 kb on + strand, within PP_5424 at 57.969 kb on + strand, within PP_5424 at 57.970 kb on - strand, within PP_5424 at 57.970 kb on - strand, within PP_5424 at 57.970 kb on - strand, within PP_5424 at 57.970 kb on - strand, within PP_5424 at 57.970 kb on - strand, within PP_5424 at 57.973 kb on + strand, within PP_5424 at 57.973 kb on + strand, within PP_5424 at 57.973 kb on + strand, within PP_5424 at 57.973 kb on + strand, within PP_5424 at 58.016 kb on - strand, within PP_5424 at 58.016 kb on - strand, within PP_5424 at 58.082 kb on + strand at 58.082 kb on + strand at 58.082 kb on + strand at 58.082 kb on + strand at 58.082 kb on + strand at 58.082 kb on + strand at 58.083 kb on - strand at 58.083 kb on - strand at 58.083 kb on - strand at 58.083 kb on - strand at 58.083 kb on - strand at 58.083 kb on - strand at 58.164 kb on + strand at 58.164 kb on + strand at 58.165 kb on - strand at 58.168 kb on + strand at 58.169 kb on - strand at 58.192 kb on + strand at 58.192 kb on + strand at 58.192 kb on + strand at 58.253 kb on - strand at 58.266 kb on - strand at 58.451 kb on + strand at 58.451 kb on + strand at 58.452 kb on - strand at 58.501 kb on + strand at 58.501 kb on + strand at 58.502 kb on - strand at 58.502 kb on - strand at 58.502 kb on - strand at 58.508 kb on + strand at 58.508 kb on + strand at 58.508 kb on + strand at 58.508 kb on + strand at 58.509 kb on - strand at 58.509 kb on - strand at 58.509 kb on - strand at 58.526 kb on - strand at 58.607 kb on - strand at 58.698 kb on + strand at 58.699 kb on - strand at 58.711 kb on + strand at 58.711 kb on + strand at 58.712 kb on - strand at 58.712 kb on - strand at 58.712 kb on - strand at 58.720 kb on + strand at 58.736 kb on - strand at 58.781 kb on + strand at 58.832 kb on + strand, within PP_0050 at 58.847 kb on + strand, within PP_0050 at 58.847 kb on + strand, within PP_0050 at 58.847 kb on + strand, within PP_0050 at 58.847 kb on + strand, within PP_0050 at 58.848 kb on - strand, within PP_0050 at 58.848 kb on - strand, within PP_0050 at 58.848 kb on - strand, within PP_0050 at 58.877 kb on + strand, within PP_0050 at 58.878 kb on - strand, within PP_0050 at 58.878 kb on - strand, within PP_0050 at 58.878 kb on - strand, within PP_0050 at 58.904 kb on - strand, within PP_0050 at 58.925 kb on + strand, within PP_0050 at 58.962 kb on + strand, within PP_0050 at 58.962 kb on + strand, within PP_0050 at 58.963 kb on - strand, within PP_0050 at 58.963 kb on - strand, within PP_0050 at 58.969 kb on + strand, within PP_0050 at 58.969 kb on + strand, within PP_0050
Per-strain Table
Position Strand Gene LocusTag Fraction Valerolactone (C) remove 56,641 + PP_0049 0.33 +1.6 56,668 + PP_0049 0.35 -2.0 56,668 + PP_0049 0.35 -2.1 56,669 - PP_0049 0.35 +0.5 56,669 - PP_0049 0.35 -0.1 56,714 + PP_0049 0.38 -1.3 56,714 + PP_0049 0.38 +1.5 56,714 + PP_0049 0.38 -0.4 56,714 + PP_0049 0.38 -0.1 56,714 + PP_0049 0.38 +0.5 56,720 + PP_0049 0.38 -0.1 56,720 + PP_0049 0.38 -0.5 56,720 + PP_0049 0.38 +0.3 56,720 + PP_0049 0.38 +1.3 56,721 - PP_0049 0.38 +0.3 56,796 + PP_0049 0.43 -0.9 56,796 + PP_0049 0.43 +0.2 56,822 + PP_0049 0.45 +0.3 56,991 + PP_0049 0.57 -1.2 56,992 - PP_0049 0.57 +1.0 56,992 - PP_0049 0.57 +1.6 56,992 - PP_0049 0.57 +3.8 57,021 + PP_0049 0.59 -0.0 57,022 - PP_0049 0.59 -0.3 57,064 + PP_0049 0.62 -1.2 57,064 + PP_0049 0.62 +1.4 57,064 + PP_0049 0.62 -0.3 57,065 - PP_0049 0.62 -1.4 57,065 - PP_0049 0.62 +0.4 57,065 - PP_0049 0.62 +0.4 57,065 - PP_0049 0.62 +1.9 57,065 - PP_0049 0.62 -0.5 57,149 + PP_0049 0.67 -0.5 57,150 - PP_0049 0.67 -0.3 57,150 - PP_0049 0.67 -0.6 57,150 - PP_0049 0.67 +2.3 57,150 - PP_0049 0.67 +0.2 57,150 - PP_0049 0.67 -1.5 57,178 - PP_0049 0.69 +0.7 57,197 - PP_0049 0.71 +0.6 57,229 - PP_0049 0.73 -0.5 57,294 + PP_0049 0.77 -0.4 57,294 + PP_0049 0.77 -0.1 57,296 + PP_0049 0.77 -1.2 57,297 - PP_0049 0.77 +0.6 57,297 - PP_0049 0.77 +0.8 57,423 + PP_0049 0.86 +1.6 57,463 - PP_0049 0.89 -1.0 57,527 - +0.1 57,637 + -0.6 57,637 + -1.4 57,637 + +3.8 57,637 + -0.2 57,638 - +1.4 57,638 - -0.4 57,641 + -0.2 57,641 + -0.7 57,641 + -1.3 57,642 - +0.7 57,782 + PP_5424 0.32 -0.9 57,783 - PP_5424 0.32 -1.4 57,783 - PP_5424 0.32 -0.1 57,917 + PP_5424 0.62 +1.0 57,917 + PP_5424 0.62 +0.2 57,918 - PP_5424 0.62 -0.9 57,918 - PP_5424 0.62 +0.8 57,961 + PP_5424 0.71 -0.1 57,961 + PP_5424 0.71 -0.6 57,961 + PP_5424 0.71 -0.6 57,962 - PP_5424 0.72 -0.5 57,962 - PP_5424 0.72 -0.2 57,962 - PP_5424 0.72 -0.4 57,962 - PP_5424 0.72 -0.2 57,969 + PP_5424 0.73 +0.9 57,969 + PP_5424 0.73 -0.0 57,969 + PP_5424 0.73 -1.7 57,969 + PP_5424 0.73 -1.1 57,970 - PP_5424 0.73 -1.2 57,970 - PP_5424 0.73 +0.4 57,970 - PP_5424 0.73 +0.1 57,970 - PP_5424 0.73 -2.4 57,970 - PP_5424 0.73 +0.9 57,973 + PP_5424 0.74 -0.1 57,973 + PP_5424 0.74 -1.4 57,973 + PP_5424 0.74 -0.6 57,973 + PP_5424 0.74 -0.2 58,016 - PP_5424 0.84 -2.4 58,016 - PP_5424 0.84 -0.9 58,082 + -0.5 58,082 + +0.2 58,082 + -0.2 58,082 + -0.4 58,082 + -0.0 58,082 + -1.7 58,083 - +0.8 58,083 - -0.5 58,083 - +0.3 58,083 - +1.2 58,083 - -0.8 58,083 - -0.6 58,164 + -0.2 58,164 + +0.2 58,165 - +0.2 58,168 + -0.9 58,169 - +1.0 58,192 + -0.2 58,192 + +0.5 58,192 + +2.2 58,253 - +1.3 58,266 - +1.3 58,451 + +0.3 58,451 + -0.5 58,452 - -0.1 58,501 + +0.8 58,501 + -1.9 58,502 - -0.6 58,502 - +1.3 58,502 - +0.9 58,508 + -0.2 58,508 + -0.9 58,508 + -0.5 58,508 + -0.5 58,509 - -1.3 58,509 - -0.6 58,509 - +0.9 58,526 - +1.4 58,607 - -1.2 58,698 + +0.4 58,699 - -0.6 58,711 + -1.5 58,711 + -0.7 58,712 - -1.7 58,712 - -1.0 58,712 - -1.6 58,720 + -0.8 58,736 - +1.4 58,781 + -1.4 58,832 + PP_0050 0.13 +1.8 58,847 + PP_0050 0.17 -0.6 58,847 + PP_0050 0.17 -0.2 58,847 + PP_0050 0.17 +0.7 58,847 + PP_0050 0.17 +0.2 58,848 - PP_0050 0.17 -0.1 58,848 - PP_0050 0.17 +1.5 58,848 - PP_0050 0.17 -0.6 58,877 + PP_0050 0.25 -0.4 58,878 - PP_0050 0.25 +0.6 58,878 - PP_0050 0.25 +0.4 58,878 - PP_0050 0.25 -1.5 58,904 - PP_0050 0.31 +0.6 58,925 + PP_0050 0.36 -0.5 58,962 + PP_0050 0.45 -0.9 58,962 + PP_0050 0.45 -1.0 58,963 - PP_0050 0.46 -1.3 58,963 - PP_0050 0.46 -0.5 58,969 + PP_0050 0.47 -0.2 58,969 + PP_0050 0.47 +0.1
Or see this region's nucleotide sequence