Strain Fitness in Pseudomonas putida KT2440 around PP_1887

Experiment: Valerolactone (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Valerolactone (C)
2,123,699	+		PP_1886	0.86	+1.4
2,123,699	+		PP_1886	0.86	-0.5
2,123,700	-		PP_1886	0.86	+1.5
2,123,822	+				-0.5
2,123,881	+				-0.4
2,123,894	-				+1.2
2,123,978	+				+1.1
2,123,978	+				-1.2
2,123,979	-				-0.6
2,124,010	+				+3.5
2,124,096	+				-0.3
2,124,096	+				-0.8
2,124,097	-				+0.9
2,124,097	-				-1.4
2,124,189	+		PP_5480	0.18	+1.9
2,124,211	-		PP_5480	0.22	+0.1
2,124,224	+		PP_5480	0.25	-0.6
2,124,244	-		PP_5480	0.29	+0.7
2,124,265	-		PP_5480	0.33	-0.4
2,124,334	-		PP_5480	0.46	-1.6
2,124,339	-		PP_5480	0.47	-1.0
2,124,391	+		PP_5480	0.58	+0.3
2,124,523	-		PP_5480	0.84	+1.1
2,124,535	-		PP_5480	0.86	-1.2
2,124,600	+				-0.3
2,124,681	+				+1.9
2,124,682	-				+2.5
2,124,685	+				+0.6
2,124,685	+				+0.5
2,124,686	-				+0.1
2,124,856	+				-1.5
2,124,856	+				+0.7
2,124,857	-				-0.8
2,124,908	+				-0.7
2,124,969	+				-1.5
2,124,970	-				-0.4
2,124,970	-				+1.4
2,124,970	-				+1.1
2,124,970	-				-0.2
2,125,125	+		PP_1887	0.13	-1.3
2,125,126	-		PP_1887	0.13	+0.2
2,125,211	+		PP_1887	0.15	+0.0
2,125,356	+		PP_1887	0.19	+0.5
2,125,356	+		PP_1887	0.19	-0.5
2,125,356	+		PP_1887	0.19	-0.0
2,125,356	+		PP_1887	0.19	-0.8
2,125,357	-		PP_1887	0.19	+1.0
2,125,357	-		PP_1887	0.19	-0.5
2,125,374	+		PP_1887	0.19	+1.2
2,125,374	+		PP_1887	0.19	-1.9
2,125,384	+		PP_1887	0.19	+0.2
2,125,385	-		PP_1887	0.19	-1.8
2,125,385	-		PP_1887	0.19	+0.1
2,125,404	+		PP_1887	0.20	-0.9
2,125,404	+		PP_1887	0.20	+0.1
2,125,405	-		PP_1887	0.20	-1.0
2,125,405	-		PP_1887	0.20	+1.1
2,125,405	-		PP_1887	0.20	+0.3
2,125,428	+		PP_1887	0.21	+1.9
2,125,445	+		PP_1887	0.21	+1.5
2,125,445	+		PP_1887	0.21	-0.6
2,125,446	-		PP_1887	0.21	+0.1
2,125,446	-		PP_1887	0.21	+0.6
2,125,543	-		PP_1887	0.24	-0.0
2,125,548	+		PP_1887	0.24	+1.5
2,125,620	+		PP_1887	0.26	-1.3
2,125,620	+		PP_1887	0.26	+0.4
2,125,620	+		PP_1887	0.26	+0.5
2,125,621	-				+1.9
2,125,621	-		PP_1887	0.26	+1.4
2,125,621	-		PP_1887	0.26	+0.1
2,125,621	-		PP_1887	0.26	+0.2
2,125,621	-		PP_1887	0.26	+1.0
2,125,621	-		PP_1887	0.26	+0.7
2,125,621	-		PP_1887	0.26	+1.4
2,125,621	-		PP_1887	0.26	+3.5
2,125,622	+		PP_1887	0.26	-0.4
2,125,623	-		PP_1887	0.26	-1.1
2,125,638	+		PP_1887	0.26	+2.3
2,125,638	+		PP_1887	0.26	-0.5
2,125,638	+		PP_1887	0.26	-0.1
2,125,638	+		PP_1887	0.26	+1.9
2,125,639	-		PP_1887	0.26	+0.5
2,125,639	-		PP_1887	0.26	+0.3
2,125,639	-		PP_1887	0.26	+1.2
2,125,640	+		PP_1887	0.26	+0.8
2,125,640	+		PP_1887	0.26	+1.4
2,125,640	+		PP_1887	0.26	-1.1
2,125,640	+		PP_1887	0.26	+0.3
2,125,640	+		PP_1887	0.26	+0.0
2,125,640	+		PP_1887	0.26	-0.6
2,125,640	+		PP_1887	0.26	+1.0
2,125,640	+		PP_1887	0.26	-0.2
2,125,641	-		PP_1887	0.26	-0.7
2,125,641	-		PP_1887	0.26	+1.0
2,125,641	-		PP_1887	0.26	+0.2
2,125,641	-		PP_1887	0.26	+0.5
2,125,644	+		PP_1887	0.26	+1.0
2,125,644	+		PP_1887	0.26	-1.0
2,125,644	+		PP_1887	0.26	+1.2
2,125,644	+		PP_1887	0.26	-1.0
2,125,644	+		PP_1887	0.26	-0.7
2,125,644	+		PP_1887	0.26	+0.0
2,125,644	+				+3.5
2,125,644	+		PP_1887	0.26	-0.1
2,125,645	-		PP_1887	0.26	-0.3
2,125,660	+		PP_1887	0.27	-0.6
2,125,688	+		PP_1887	0.27	-1.1
2,125,688	+		PP_1887	0.27	+1.3
2,125,689	-		PP_1887	0.27	-0.5
2,125,700	+		PP_1887	0.28	-0.3
2,125,700	+		PP_1887	0.28	-1.4
2,125,700	+		PP_1887	0.28	+0.4
2,125,701	-		PP_1887	0.28	+0.1
2,125,701	-		PP_1887	0.28	-0.4
2,125,701	-		PP_1887	0.28	+0.4
2,125,816	-		PP_1887	0.31	+0.2
2,125,903	-		PP_1887	0.33	+1.6
2,125,969	-		PP_1887	0.35	+0.3
2,126,086	-		PP_1887	0.38	-0.2
2,126,109	-		PP_1887	0.38	-0.5
2,126,112	+		PP_1887	0.38	-1.9
2,126,112	+		PP_1887	0.38	-0.0
2,126,113	-		PP_1887	0.38	-0.7
2,126,113	-		PP_1887	0.38	+0.4
2,126,113	-		PP_1887	0.38	-0.2
2,126,177	+		PP_1887	0.40	+0.6
2,126,177	+		PP_1887	0.40	+1.1
2,126,177	+		PP_1887	0.40	+0.0
2,126,178	-		PP_1887	0.40	+0.5
2,126,235	+		PP_1887	0.41	+0.5
2,126,235	+		PP_1887	0.41	-0.9
2,126,235	+		PP_1887	0.41	+1.0
2,126,235	+		PP_1887	0.41	-0.4
2,126,235	+		PP_1887	0.41	+0.4
2,126,235	+		PP_1887	0.41	+0.0
2,126,235	+		PP_1887	0.41	+0.7
2,126,236	-		PP_1887	0.41	-1.7
2,126,236	-		PP_1887	0.41	-0.4
2,126,310	+		PP_1887	0.43	-0.3
2,126,311	-		PP_1887	0.43	+1.4
2,126,316	+		PP_1887	0.44	-0.4
2,126,317	-		PP_1887	0.44	+0.5
2,126,466	+		PP_1887	0.47	+0.2
2,126,466	+		PP_1887	0.47	-0.5
2,126,467	-		PP_1887	0.47	+0.7
2,126,467	-		PP_1887	0.47	-0.0
2,126,467	-		PP_1887	0.47	+0.5
2,126,469	+		PP_1887	0.47	-0.3
2,126,469	+		PP_1887	0.47	-0.9
2,126,469	+		PP_1887	0.47	-0.5
2,126,469	+		PP_1887	0.47	-0.7
2,126,470	-		PP_1887	0.48	+0.0
2,126,470	-		PP_1887	0.48	-0.1
2,126,538	+		PP_1887	0.49	-0.7
2,126,538	+		PP_1887	0.49	-0.4
2,126,539	-		PP_1887	0.49	-1.4
2,126,544	+		PP_1887	0.49	-0.7
2,126,545	-		PP_1887	0.49	+0.7
2,126,545	-		PP_1887	0.49	-0.7
2,126,560	-		PP_1887	0.50	+1.0
2,126,560	-		PP_1887	0.50	+0.3
2,126,560	-		PP_1887	0.50	+0.7
2,126,589	+		PP_1887	0.51	+0.8
2,126,589	+		PP_1887	0.51	-0.3
2,126,679	+		PP_1887	0.53	-0.8
2,126,679	+		PP_1887	0.53	-0.0
2,126,679	+		PP_1887	0.53	-1.4
2,126,679	+		PP_1887	0.53	+0.7
2,126,679	+		PP_1887	0.53	+1.0
2,126,679	+		PP_1887	0.53	+0.0
2,126,680	-		PP_1887	0.53	+0.5
2,126,680	-		PP_1887	0.53	-0.4
2,126,680	-		PP_1887	0.53	-1.3
2,126,680	-		PP_1887	0.53	-0.2
2,126,699	+		PP_1887	0.53	+0.3
2,126,699	+		PP_1887	0.53	-0.2
2,126,699	+		PP_1887	0.53	+1.8
2,126,700	-		PP_1887	0.53	+0.9
2,126,700	-		PP_1887	0.53	+1.1
2,126,704	-		PP_1887	0.54	-1.0
2,126,800	-		PP_1887	0.56	-0.5
2,126,820	+		PP_1887	0.57	+0.6
2,126,820	+		PP_1887	0.57	+1.1
2,126,821	-		PP_1887	0.57	+1.0
2,126,821	-		PP_1887	0.57	-0.6
2,126,821	-		PP_1887	0.57	-1.2
2,126,952	+		PP_1887	0.60	+0.1
2,126,952	+		PP_1887	0.60	+0.8
2,126,953	-		PP_1887	0.60	-0.2
2,126,953	-		PP_1887	0.60	-1.0
2,127,011	+		PP_1887	0.61	-0.5
2,127,012	-		PP_1887	0.62	+1.2
2,127,033	+		PP_1887	0.62	-1.6
2,127,033	+		PP_1887	0.62	+0.0
2,127,034	-		PP_1887	0.62	+0.5
2,127,034	-		PP_1887	0.62	+0.8
2,127,034	-		PP_1887	0.62	-0.5
2,127,057	-		PP_1887	0.63	-1.3
2,127,100	-		PP_1887	0.64	+0.2
2,127,106	-		PP_1887	0.64	-0.4
2,127,155	+		PP_1887	0.65	-0.3
2,127,155	+		PP_1887	0.65	+1.9
2,127,155	+		PP_1887	0.65	+0.2
2,127,162	+		PP_1887	0.65	-0.3
2,127,163	-		PP_1887	0.65	-0.3
2,127,171	+		PP_1887	0.66	-0.4
2,127,171	+		PP_1887	0.66	-2.6
2,127,172	-		PP_1887	0.66	-0.4
2,127,172	-		PP_1887	0.66	-1.0
2,127,172	-		PP_1887	0.66	+0.4
2,127,172	-		PP_1887	0.66	+0.8
2,127,284	-		PP_1887	0.69	-0.4
2,127,319	-		PP_1887	0.69	+0.3
2,127,379	-		PP_1887	0.71	+2.0
2,127,444	+		PP_1887	0.73	-0.0
2,127,474	-		PP_1887	0.73	+0.0
2,127,474	-		PP_1887	0.73	+0.6
2,127,513	+		PP_1887	0.74	+0.2
2,127,513	+		PP_1887	0.74	-0.4
2,127,600	+		PP_1887	0.77	+1.3
2,127,600	+		PP_1887	0.77	+1.1
2,127,600	+		PP_1887	0.77	-0.8
2,127,601	-		PP_1887	0.77	+0.3
2,127,601	-		PP_1887	0.77	-1.6
2,127,601	-		PP_1887	0.77	+1.0
2,127,607	-		PP_1887	0.77	-0.2
2,127,633	+		PP_1887	0.78	+1.4
2,127,633	+		PP_1887	0.78	-0.1
2,127,633	+		PP_1887	0.78	+2.8
2,127,633	+		PP_1887	0.78	+0.7
2,127,634	-		PP_1887	0.78	-0.0
2,127,634	-		PP_1887	0.78	+0.0
2,127,634	-		PP_1887	0.78	+1.1
2,127,634	-		PP_1887	0.78	+0.3
2,127,664	-		PP_1887	0.78	-0.2
2,127,818	+		PP_1887	0.82	-1.3
2,127,819	-		PP_1887	0.82	-2.1
2,127,819	-		PP_1887	0.82	-0.4
2,127,867	+		PP_1887	0.84	+2.1
2,127,939	+		PP_1887	0.85	+0.2
2,127,939	+		PP_1887	0.85	-0.3
2,127,939	+		PP_1887	0.85	-0.8
2,127,940	-		PP_1887	0.85	+1.4
2,128,032	+		PP_1887	0.88	+0.3
2,128,039	-		PP_1887	0.88	+0.3
2,128,063	+		PP_1887	0.89	-0.7
2,128,063	+		PP_1887	0.89	+0.2
2,128,064	-		PP_1887	0.89	+1.6
2,128,064	-		PP_1887	0.89	-1.1
2,128,064	-		PP_1887	0.89	+1.4
2,128,065	+		PP_1887	0.89	+1.5
2,128,065	+		PP_1887	0.89	+0.3
2,128,065	+		PP_1887	0.89	+0.3
2,128,065	+		PP_1887	0.89	-1.3
2,128,065	+		PP_1887	0.89	-0.0
2,128,065	+		PP_1887	0.89	-0.5
2,128,065	+		PP_1887	0.89	-0.5
2,128,065	+		PP_1887	0.89	+0.2
2,128,066	-		PP_1887	0.89	-0.7
2,128,066	-		PP_1887	0.89	+0.4
2,128,066	-		PP_1887	0.89	-1.3
2,128,066	-		PP_1887	0.89	-0.8
2,128,066	-		PP_1887	0.89	+0.5
2,128,066	-		PP_1887	0.89	+0.6
2,128,066	-		PP_1887	0.89	-1.8
2,128,066	-		PP_1887	0.89	-0.2
2,128,066	-		PP_1887	0.89	-0.8
2,128,066	-		PP_1887	0.89	+0.3
2,128,066	-		PP_1887	0.89	+0.7
2,128,127	-				-0.5
2,128,170	+				+2.1
2,128,170	+				-2.0
2,128,217	+				+0.8
2,128,272	+				+1.6
2,128,272	+				+0.4
2,128,272	+				-0.2
2,128,272	+				-0.5
2,128,272	+				+0.9
2,128,273	-				-0.4
2,128,273	-				+0.0
2,128,273	-				-0.7
2,128,273	-				-1.0
2,128,273	-				-0.4
2,128,273	-				+0.1
2,128,273	-				+0.7
2,128,273	-				-1.7
2,128,318	-				-0.0
2,128,348	-				+2.3
2,128,391	-				-0.5
2,128,398	+				+0.2
2,128,398	+				+0.5
2,128,398	+				+1.5
2,128,399	-				+1.9
2,128,456	-				+0.9
2,128,456	-				-0.6
2,128,461	+				-0.4
2,128,461	+				-0.1
2,128,461	+				-0.6
2,128,529	+				-0.1
2,128,530	-				+2.2
2,128,531	+				+0.3
2,128,531	+				+2.5
2,128,532	-				-0.1
2,128,675	+		PP_1888	0.11	+0.1
2,128,708	+		PP_1888	0.14	+0.4
2,128,718	+		PP_1888	0.15	-1.8
2,128,719	-		PP_1888	0.15	-0.2
2,128,719	-		PP_1888	0.15	-1.0
2,128,719	-		PP_1888	0.15	-0.0
2,128,719	-				+0.2
2,128,731	+		PP_1888	0.16	+0.2
2,128,731	+		PP_1888	0.16	+0.6
2,128,731	+		PP_1888	0.16	-2.1
2,128,732	-		PP_1888	0.16	+1.7
2,128,732	-		PP_1888	0.16	-0.7
2,128,735	+		PP_1888	0.17	+0.3
2,128,735	+		PP_1888	0.17	+2.5
2,128,735	+		PP_1888	0.17	+0.9
2,128,735	+		PP_1888	0.17	-1.0
2,128,735	+		PP_1888	0.17	-0.6
2,128,736	-		PP_1888	0.17	+0.4
2,128,736	-		PP_1888	0.17	+0.2
2,128,736	-		PP_1888	0.17	-0.7
2,128,736	-		PP_1888	0.17	-0.1
2,128,736	-		PP_1888	0.17	-0.4
2,128,831	-		PP_1888	0.25	+0.1
2,129,021	+		PP_1888	0.43	-0.1
2,129,021	+		PP_1888	0.43	-0.8
2,129,022	-		PP_1888	0.43	+1.1
2,129,071	+		PP_1888	0.47	-1.7
2,129,177	+		PP_1888	0.57	+0.5
2,129,177	+		PP_1888	0.57	-1.3
2,129,177	+		PP_1888	0.57	+0.9
2,129,181	-		PP_1888	0.57	-1.3
2,129,344	+		PP_1888	0.72	-0.2
2,129,388	-		PP_1888	0.76	-0.4
2,129,388	-		PP_1888	0.76	+0.3
2,129,486	+		PP_1888	0.85	-0.9
2,129,486	+		PP_1888	0.85	+3.8
2,129,486	+		PP_1888	0.85	-0.0
2,129,486	+		PP_1888	0.85	-1.2
2,129,486	+		PP_1888	0.85	-0.1
2,129,486	+		PP_1888	0.85	-0.3
2,129,487	-		PP_1888	0.85	-0.7
2,129,487	-		PP_1888	0.85	-0.4
2,129,487	-		PP_1888	0.85	-0.0