Strain Fitness in Pseudomonas putida KT2440 around PP_0300

Experiment: Valerolactone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0298 and PP_0299 are separated by 119 nucleotidesPP_0299 and PP_0300 are separated by 131 nucleotidesPP_0300 and PP_0301 are separated by 99 nucleotidesPP_0301 and PP_0302 are separated by 10 nucleotides PP_0298: PP_0298 - AraC-family transcriptional regulator, at 358,534 to 359,640 _0298 PP_0299: PP_0299 - conserved protein of unknown function, at 359,760 to 360,218 _0299 PP_0300: PP_0300 - putative metallopeptidase, at 360,350 to 361,936 _0300 PP_0301: PP_0301 - betainyl-CoA thiolase, at 362,036 to 362,506 _0301 PP_0302: PP_0302 - L-carnitine 3-dehydrogenase (EC 1.1.1.108) (from data), at 362,517 to 363,482 _0302 Position (kb) 360 361 362Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 359.350 kb on + strand, within PP_0298at 359.351 kb on - strand, within PP_0298at 359.353 kb on + strand, within PP_0298at 359.354 kb on - strand, within PP_0298at 359.354 kb on - strand, within PP_0298at 359.354 kb on - strand, within PP_0298at 359.467 kb on + strand, within PP_0298at 359.476 kb on + strand, within PP_0298at 359.630 kb on + strandat 359.631 kb on - strandat 359.631 kb on - strandat 359.631 kb on - strandat 359.631 kb on - strandat 359.631 kb on - strandat 359.820 kb on + strand, within PP_0299at 359.851 kb on + strand, within PP_0299at 359.851 kb on + strand, within PP_0299at 359.851 kb on + strand, within PP_0299at 359.851 kb on + strand, within PP_0299at 359.851 kb on + strand, within PP_0299at 359.852 kb on - strand, within PP_0299at 359.852 kb on - strand, within PP_0299at 359.852 kb on - strand, within PP_0299at 359.852 kb on - strand, within PP_0299at 359.852 kb on - strand, within PP_0299at 359.852 kb on - strand, within PP_0299at 359.951 kb on + strand, within PP_0299at 360.034 kb on - strand, within PP_0299at 360.040 kb on - strand, within PP_0299at 360.060 kb on + strand, within PP_0299at 360.126 kb on + strand, within PP_0299at 360.147 kb on + strand, within PP_0299at 360.191 kb on + strandat 360.192 kb on - strandat 360.192 kb on - strandat 360.290 kb on - strandat 360.290 kb on - strandat 360.293 kb on + strandat 360.330 kb on - strandat 360.387 kb on + strandat 360.430 kb on + strandat 360.458 kb on - strandat 360.574 kb on - strand, within PP_0300at 360.616 kb on - strand, within PP_0300at 360.691 kb on - strand, within PP_0300at 360.721 kb on + strand, within PP_0300at 360.722 kb on - strand, within PP_0300at 360.732 kb on - strandat 360.732 kb on - strand, within PP_0300at 360.753 kb on - strand, within PP_0300at 360.927 kb on + strand, within PP_0300at 360.928 kb on - strand, within PP_0300at 360.982 kb on + strand, within PP_0300at 360.983 kb on - strand, within PP_0300at 360.983 kb on - strand, within PP_0300at 360.994 kb on - strand, within PP_0300at 360.994 kb on - strand, within PP_0300at 361.001 kb on - strand, within PP_0300at 361.034 kb on + strand, within PP_0300at 361.060 kb on - strand, within PP_0300at 361.076 kb on + strand, within PP_0300at 361.077 kb on - strand, within PP_0300at 361.104 kb on + strand, within PP_0300at 361.105 kb on - strand, within PP_0300at 361.178 kb on - strand, within PP_0300at 361.265 kb on - strand, within PP_0300at 361.282 kb on - strand, within PP_0300at 361.324 kb on + strand, within PP_0300at 361.324 kb on + strand, within PP_0300at 361.324 kb on + strand, within PP_0300at 361.325 kb on - strand, within PP_0300at 361.361 kb on - strand, within PP_0300at 361.361 kb on - strand, within PP_0300at 361.378 kb on + strand, within PP_0300at 361.378 kb on + strand, within PP_0300at 361.405 kb on - strand, within PP_0300at 361.412 kb on + strand, within PP_0300at 361.413 kb on - strand, within PP_0300at 361.418 kb on + strand, within PP_0300at 361.424 kb on + strand, within PP_0300at 361.425 kb on - strand, within PP_0300at 361.425 kb on - strand, within PP_0300at 361.425 kb on - strand, within PP_0300at 361.433 kb on - strand, within PP_0300at 361.433 kb on - strand, within PP_0300at 361.484 kb on + strand, within PP_0300at 361.508 kb on + strand, within PP_0300at 361.538 kb on - strand, within PP_0300at 361.628 kb on + strand, within PP_0300at 361.738 kb on - strand, within PP_0300at 361.805 kb on - strandat 361.854 kb on + strandat 361.855 kb on - strandat 361.917 kb on - strandat 361.928 kb on + strandat 361.957 kb on + strandat 361.958 kb on - strandat 362.000 kb on + strandat 362.005 kb on - strandat 362.005 kb on - strandat 362.005 kb on - strandat 362.005 kb on - strandat 362.056 kb on + strandat 362.066 kb on - strandat 362.067 kb on + strandat 362.068 kb on - strandat 362.068 kb on - strandat 362.100 kb on - strand, within PP_0301at 362.174 kb on + strand, within PP_0301at 362.175 kb on - strand, within PP_0301at 362.232 kb on + strand, within PP_0301at 362.233 kb on - strand, within PP_0301at 362.233 kb on - strand, within PP_0301at 362.313 kb on + strand, within PP_0301at 362.314 kb on - strand, within PP_0301at 362.321 kb on - strand, within PP_0301at 362.409 kb on + strand, within PP_0301at 362.409 kb on + strand, within PP_0301at 362.427 kb on + strand, within PP_0301at 362.454 kb on + strand, within PP_0301at 362.519 kb on - strandat 362.519 kb on - strandat 362.695 kb on + strand, within PP_0302at 362.695 kb on + strand, within PP_0302at 362.696 kb on - strand, within PP_0302at 362.696 kb on - strand, within PP_0302at 362.771 kb on + strand, within PP_0302at 362.771 kb on + strand, within PP_0302at 362.773 kb on + strand, within PP_0302at 362.773 kb on + strand, within PP_0302at 362.773 kb on + strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.777 kb on + strand, within PP_0302at 362.777 kb on + strand, within PP_0302at 362.777 kb on + strand, within PP_0302at 362.778 kb on - strand, within PP_0302at 362.778 kb on - strand, within PP_0302at 362.778 kb on - strand, within PP_0302at 362.778 kb on - strand, within PP_0302at 362.778 kb on - strand, within PP_0302

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Per-strain Table

Position Strand Gene LocusTag Fraction Valerolactone (C)
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359,350 + PP_0298 0.74 -0.3
359,351 - PP_0298 0.74 -1.7
359,353 + PP_0298 0.74 -0.1
359,354 - PP_0298 0.74 -0.6
359,354 - PP_0298 0.74 +1.4
359,354 - PP_0298 0.74 +0.8
359,467 + PP_0298 0.84 +1.0
359,476 + PP_0298 0.85 +0.1
359,630 + -0.1
359,631 - -0.9
359,631 - -0.4
359,631 - -0.5
359,631 - +0.8
359,631 - -0.5
359,820 + PP_0299 0.13 -0.1
359,851 + PP_0299 0.20 -2.0
359,851 + PP_0299 0.20 +0.2
359,851 + PP_0299 0.20 -0.6
359,851 + PP_0299 0.20 -0.2
359,851 + PP_0299 0.20 +0.3
359,852 - PP_0299 0.20 +0.4
359,852 - PP_0299 0.20 -0.7
359,852 - PP_0299 0.20 +0.3
359,852 - PP_0299 0.20 +0.9
359,852 - PP_0299 0.20 +1.4
359,852 - PP_0299 0.20 -0.7
359,951 + PP_0299 0.42 +1.0
360,034 - PP_0299 0.60 -1.9
360,040 - PP_0299 0.61 -0.2
360,060 + PP_0299 0.65 -0.6
360,126 + PP_0299 0.80 +0.2
360,147 + PP_0299 0.84 -0.4
360,191 + -0.4
360,192 - -0.6
360,192 - +0.6
360,290 - +0.1
360,290 - -0.2
360,293 + -0.6
360,330 - -0.8
360,387 + -0.3
360,430 + +2.3
360,458 - -1.5
360,574 - PP_0300 0.14 +2.7
360,616 - PP_0300 0.17 +0.5
360,691 - PP_0300 0.21 +0.5
360,721 + PP_0300 0.23 +0.8
360,722 - PP_0300 0.23 -0.1
360,732 - +2.7
360,732 - PP_0300 0.24 +0.1
360,753 - PP_0300 0.25 +0.5
360,927 + PP_0300 0.36 +0.3
360,928 - PP_0300 0.36 +0.4
360,982 + PP_0300 0.40 +1.8
360,983 - PP_0300 0.40 +0.4
360,983 - PP_0300 0.40 +3.3
360,994 - PP_0300 0.41 +0.1
360,994 - PP_0300 0.41 +0.7
361,001 - PP_0300 0.41 +2.5
361,034 + PP_0300 0.43 +0.6
361,060 - PP_0300 0.45 -0.7
361,076 + PP_0300 0.46 +0.8
361,077 - PP_0300 0.46 +1.0
361,104 + PP_0300 0.48 +0.4
361,105 - PP_0300 0.48 +2.1
361,178 - PP_0300 0.52 -2.3
361,265 - PP_0300 0.58 +0.3
361,282 - PP_0300 0.59 +2.7
361,324 + PP_0300 0.61 +0.1
361,324 + PP_0300 0.61 -1.5
361,324 + PP_0300 0.61 +1.2
361,325 - PP_0300 0.61 -0.0
361,361 - PP_0300 0.64 +0.2
361,361 - PP_0300 0.64 +1.4
361,378 + PP_0300 0.65 +0.8
361,378 + PP_0300 0.65 +0.4
361,405 - PP_0300 0.66 +2.3
361,412 + PP_0300 0.67 +0.5
361,413 - PP_0300 0.67 -1.5
361,418 + PP_0300 0.67 -0.3
361,424 + PP_0300 0.68 +0.1
361,425 - PP_0300 0.68 +0.1
361,425 - PP_0300 0.68 +1.5
361,425 - PP_0300 0.68 -0.2
361,433 - PP_0300 0.68 +0.2
361,433 - PP_0300 0.68 +0.5
361,484 + PP_0300 0.71 +0.6
361,508 + PP_0300 0.73 -0.9
361,538 - PP_0300 0.75 +0.3
361,628 + PP_0300 0.81 -1.1
361,738 - PP_0300 0.87 +0.8
361,805 - -0.0
361,854 + -0.2
361,855 - +0.1
361,917 - +0.2
361,928 + +0.2
361,957 + -3.1
361,958 - -0.1
362,000 + -0.5
362,005 - -0.7
362,005 - -0.7
362,005 - -1.2
362,005 - +1.3
362,056 + -1.2
362,066 - -0.7
362,067 + +0.4
362,068 - +2.7
362,068 - -1.1
362,100 - PP_0301 0.14 +0.1
362,174 + PP_0301 0.29 -0.9
362,175 - PP_0301 0.30 +0.0
362,232 + PP_0301 0.42 -2.0
362,233 - PP_0301 0.42 -0.4
362,233 - PP_0301 0.42 +1.7
362,313 + PP_0301 0.59 +0.1
362,314 - PP_0301 0.59 -0.5
362,321 - PP_0301 0.61 -1.8
362,409 + PP_0301 0.79 -1.3
362,409 + PP_0301 0.79 +1.4
362,427 + PP_0301 0.83 +2.7
362,454 + PP_0301 0.89 -0.4
362,519 - +0.8
362,519 - -0.5
362,695 + PP_0302 0.18 +0.8
362,695 + PP_0302 0.18 +0.1
362,696 - PP_0302 0.19 -1.3
362,696 - PP_0302 0.19 -0.1
362,771 + PP_0302 0.26 -0.2
362,771 + PP_0302 0.26 -0.6
362,773 + PP_0302 0.27 +1.3
362,773 + PP_0302 0.27 -0.4
362,773 + PP_0302 0.27 -2.0
362,774 - PP_0302 0.27 -0.9
362,774 - PP_0302 0.27 -0.7
362,774 - PP_0302 0.27 +1.1
362,774 - PP_0302 0.27 +0.9
362,774 - PP_0302 0.27 -0.1
362,774 - PP_0302 0.27 -1.2
362,777 + PP_0302 0.27 -2.3
362,777 + PP_0302 0.27 +2.0
362,777 + PP_0302 0.27 +2.5
362,778 - PP_0302 0.27 +0.5
362,778 - PP_0302 0.27 -0.8
362,778 - PP_0302 0.27 +1.7
362,778 - PP_0302 0.27 -0.2
362,778 - PP_0302 0.27 -1.6

Or see this region's nucleotide sequence