Experiment: Valerolactone (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5200 and PP_5201 are separated by 21 nucleotides PP_5201 and PP_5721 are separated by 145 nucleotides PP_5721 and PP_5202 overlap by 4 nucleotides PP_5202 and PP_5203 are separated by 322 nucleotides
PP_5200: PP_5200 - proline aminopeptidase P II, at 5,932,066 to 5,933,400
_5200
PP_5201: PP_5201 - conserved protein of unknown function, UPF0149 family, at 5,933,422 to 5,933,976
_5201
PP_5721: PP_5721 - conserved protein of unknown function, at 5,934,122 to 5,934,340
_5721
PP_5202: PP_5202 - putative cell division protein, at 5,934,337 to 5,934,657
_5202
PP_5203: PP_5203 - 5-formyltetrahydrofolate cyclo-ligase, at 5,934,980 to 5,935,588
_5203
Position (kb) 5934
5935 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5933.180 kb on + strand, within PP_5200 at 5933.181 kb on - strand, within PP_5200 at 5933.375 kb on + strand at 5933.376 kb on - strand at 5933.409 kb on + strand at 5933.409 kb on + strand at 5933.410 kb on - strand at 5933.410 kb on - strand at 5933.502 kb on - strand, within PP_5201 at 5933.502 kb on - strand, within PP_5201 at 5933.519 kb on + strand, within PP_5201 at 5933.519 kb on + strand, within PP_5201 at 5933.955 kb on - strand at 5933.967 kb on + strand at 5933.985 kb on - strand at 5934.023 kb on + strand at 5934.023 kb on + strand at 5934.024 kb on - strand at 5934.024 kb on - strand at 5934.024 kb on - strand at 5934.029 kb on - strand at 5934.029 kb on - strand at 5934.198 kb on + strand, within PP_5721 at 5934.198 kb on + strand, within PP_5721 at 5934.199 kb on - strand, within PP_5721 at 5934.219 kb on + strand, within PP_5721 at 5934.219 kb on + strand, within PP_5721 at 5934.219 kb on + strand, within PP_5721 at 5934.220 kb on - strand, within PP_5721 at 5934.220 kb on - strand, within PP_5721 at 5934.220 kb on - strand, within PP_5721 at 5934.220 kb on - strand, within PP_5721 at 5934.220 kb on - strand, within PP_5721 at 5934.220 kb on - strand, within PP_5721 at 5934.223 kb on - strand, within PP_5721 at 5934.223 kb on - strand, within PP_5721 at 5934.223 kb on - strand, within PP_5721 at 5934.223 kb on - strand, within PP_5721 at 5934.223 kb on - strand, within PP_5721 at 5934.309 kb on + strand, within PP_5721 at 5934.351 kb on + strand at 5934.351 kb on + strand at 5934.352 kb on - strand at 5934.522 kb on + strand, within PP_5202 at 5934.523 kb on - strand, within PP_5202 at 5934.619 kb on - strand, within PP_5202 at 5934.642 kb on + strand at 5934.665 kb on - strand at 5934.702 kb on + strand at 5934.703 kb on - strand at 5934.703 kb on - strand at 5934.826 kb on - strand at 5934.842 kb on + strand at 5934.903 kb on + strand at 5934.903 kb on + strand at 5934.904 kb on - strand at 5934.904 kb on - strand at 5934.917 kb on - strand at 5934.946 kb on + strand at 5935.014 kb on + strand at 5935.014 kb on + strand at 5935.015 kb on - strand at 5935.048 kb on + strand, within PP_5203 at 5935.085 kb on + strand, within PP_5203 at 5935.140 kb on - strand, within PP_5203 at 5935.211 kb on + strand, within PP_5203 at 5935.211 kb on + strand, within PP_5203 at 5935.212 kb on - strand, within PP_5203 at 5935.212 kb on - strand, within PP_5203 at 5935.300 kb on + strand, within PP_5203
Per-strain Table
Position Strand Gene LocusTag Fraction Valerolactone (C) remove 5,933,180 + PP_5200 0.83 +3.9 5,933,181 - PP_5200 0.84 -1.3 5,933,375 + +2.4 5,933,376 - +3.9 5,933,409 + +2.9 5,933,409 + +1.9 5,933,410 - +0.9 5,933,410 - +0.2 5,933,502 - PP_5201 0.14 +0.0 5,933,502 - PP_5201 0.14 -0.2 5,933,519 + PP_5201 0.17 +1.1 5,933,519 + PP_5201 0.17 +2.4 5,933,955 - +0.1 5,933,967 + +1.4 5,933,985 - +0.2 5,934,023 + +2.9 5,934,023 + +1.6 5,934,024 - -0.1 5,934,024 - -0.5 5,934,024 - -1.1 5,934,029 - +0.5 5,934,029 - +3.4 5,934,198 + PP_5721 0.35 -1.1 5,934,198 + PP_5721 0.35 +1.5 5,934,199 - PP_5721 0.35 -1.0 5,934,219 + PP_5721 0.44 +0.8 5,934,219 + PP_5721 0.44 +1.4 5,934,219 + PP_5721 0.44 +0.9 5,934,220 - PP_5721 0.45 +0.1 5,934,220 - PP_5721 0.45 +0.5 5,934,220 - PP_5721 0.45 +1.4 5,934,220 - PP_5721 0.45 -0.4 5,934,220 - PP_5721 0.45 +2.1 5,934,220 - PP_5721 0.45 +0.0 5,934,223 - PP_5721 0.46 +1.1 5,934,223 - PP_5721 0.46 +0.0 5,934,223 - PP_5721 0.46 +0.1 5,934,223 - PP_5721 0.46 +1.2 5,934,223 - PP_5721 0.46 +0.3 5,934,309 + PP_5721 0.85 +0.3 5,934,351 + -0.5 5,934,351 + +0.5 5,934,352 - -0.4 5,934,522 + PP_5202 0.58 -1.2 5,934,523 - PP_5202 0.58 -0.3 5,934,619 - PP_5202 0.88 +0.3 5,934,642 + +0.6 5,934,665 - -1.5 5,934,702 + -0.0 5,934,703 - -2.5 5,934,703 - -0.3 5,934,826 - -1.3 5,934,842 + +0.9 5,934,903 + -1.6 5,934,903 + +2.4 5,934,904 - +0.1 5,934,904 - -0.6 5,934,917 - -0.9 5,934,946 + +0.8 5,935,014 + -1.0 5,935,014 + -1.7 5,935,015 - -1.6 5,935,048 + PP_5203 0.11 -0.6 5,935,085 + PP_5203 0.17 -0.2 5,935,140 - PP_5203 0.26 -3.4 5,935,211 + PP_5203 0.38 -0.7 5,935,211 + PP_5203 0.38 +1.1 5,935,212 - PP_5203 0.38 -0.4 5,935,212 - PP_5203 0.38 -0.3 5,935,300 + PP_5203 0.53 +0.5
Or see this region's nucleotide sequence