Strain Fitness in Pseudomonas putida KT2440 around PP_5044

Experiment: Valerolactone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5043 and PP_5044 are separated by 185 nucleotidesPP_5044 and PP_5045 are separated by 128 nucleotides PP_5043: PP_5043 - putative PhoPQ-activated pathogenicity-related protein, at 5,746,552 to 5,747,973 _5043 PP_5044: PP_5044 - ribosome associated GTPase, at 5,748,159 to 5,749,979 _5044 PP_5045: PP_5045 - tRNA sulfurtransferase, at 5,750,108 to 5,751,562 _5045 Position (kb) 5748 5749 5750Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5747.173 kb on + strand, within PP_5043at 5747.173 kb on + strand, within PP_5043at 5747.173 kb on + strand, within PP_5043at 5747.174 kb on - strand, within PP_5043at 5747.174 kb on - strand, within PP_5043at 5747.490 kb on + strand, within PP_5043at 5747.490 kb on + strand, within PP_5043at 5747.491 kb on - strand, within PP_5043at 5747.491 kb on - strand, within PP_5043at 5747.546 kb on + strand, within PP_5043at 5747.546 kb on + strand, within PP_5043at 5747.546 kb on + strand, within PP_5043at 5747.546 kb on + strand, within PP_5043at 5747.546 kb on + strand, within PP_5043at 5747.546 kb on + strand, within PP_5043at 5747.547 kb on - strand, within PP_5043at 5747.547 kb on - strand, within PP_5043at 5747.547 kb on - strand, within PP_5043at 5747.547 kb on - strand, within PP_5043at 5747.547 kb on - strand, within PP_5043at 5747.672 kb on - strand, within PP_5043at 5747.672 kb on - strand, within PP_5043at 5747.672 kb on - strand, within PP_5043at 5747.674 kb on + strand, within PP_5043at 5747.674 kb on + strand, within PP_5043at 5747.674 kb on + strand, within PP_5043at 5747.674 kb on + strand, within PP_5043at 5747.675 kb on - strand, within PP_5043at 5747.675 kb on - strand, within PP_5043at 5747.792 kb on + strand, within PP_5043at 5747.792 kb on + strand, within PP_5043at 5747.792 kb on + strand, within PP_5043at 5747.792 kb on + strand, within PP_5043at 5747.793 kb on - strand, within PP_5043at 5747.793 kb on - strand, within PP_5043at 5747.793 kb on - strand, within PP_5043at 5747.799 kb on + strand, within PP_5043at 5747.799 kb on + strand, within PP_5043at 5747.799 kb on + strand, within PP_5043at 5747.800 kb on - strand, within PP_5043at 5747.801 kb on + strand, within PP_5043at 5747.802 kb on - strand, within PP_5043at 5747.834 kb on + strandat 5747.879 kb on - strandat 5747.901 kb on + strandat 5747.949 kb on + strandat 5747.961 kb on - strandat 5748.006 kb on + strandat 5748.006 kb on + strandat 5748.007 kb on - strandat 5748.007 kb on - strandat 5748.007 kb on - strandat 5748.081 kb on + strandat 5748.155 kb on + strandat 5748.155 kb on + strandat 5748.156 kb on - strandat 5748.156 kb on - strandat 5748.958 kb on + strand, within PP_5044at 5749.717 kb on - strand, within PP_5044at 5750.030 kb on + strandat 5750.030 kb on + strandat 5750.031 kb on - strandat 5750.031 kb on - strandat 5750.042 kb on - strandat 5750.083 kb on - strandat 5750.083 kb on - strandat 5750.083 kb on - strandat 5750.093 kb on + strandat 5750.109 kb on + strandat 5750.197 kb on - strandat 5750.250 kb on + strandat 5750.251 kb on - strandat 5750.781 kb on + strand, within PP_5045at 5750.782 kb on - strandat 5750.782 kb on - strand, within PP_5045at 5750.782 kb on - strand, within PP_5045at 5750.782 kb on - strand, within PP_5045at 5750.782 kb on - strand, within PP_5045at 5750.846 kb on + strand, within PP_5045at 5750.847 kb on - strand, within PP_5045at 5750.881 kb on - strand, within PP_5045at 5750.973 kb on + strand, within PP_5045at 5750.973 kb on + strand, within PP_5045

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Per-strain Table

Position Strand Gene LocusTag Fraction Valerolactone (C)
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5,747,173 + PP_5043 0.44 +1.4
5,747,173 + PP_5043 0.44 +2.0
5,747,173 + PP_5043 0.44 -0.5
5,747,174 - PP_5043 0.44 -0.6
5,747,174 - PP_5043 0.44 -0.2
5,747,490 + PP_5043 0.66 -0.5
5,747,490 + PP_5043 0.66 -1.2
5,747,491 - PP_5043 0.66 +0.8
5,747,491 - PP_5043 0.66 +1.4
5,747,546 + PP_5043 0.70 -0.7
5,747,546 + PP_5043 0.70 -0.2
5,747,546 + PP_5043 0.70 -0.8
5,747,546 + PP_5043 0.70 +2.8
5,747,546 + PP_5043 0.70 +0.5
5,747,546 + PP_5043 0.70 +1.7
5,747,547 - PP_5043 0.70 -2.3
5,747,547 - PP_5043 0.70 -0.1
5,747,547 - PP_5043 0.70 -0.6
5,747,547 - PP_5043 0.70 +0.0
5,747,547 - PP_5043 0.70 +1.6
5,747,672 - PP_5043 0.79 -0.9
5,747,672 - PP_5043 0.79 +0.6
5,747,672 - PP_5043 0.79 -0.6
5,747,674 + PP_5043 0.79 +1.7
5,747,674 + PP_5043 0.79 +1.5
5,747,674 + PP_5043 0.79 +1.1
5,747,674 + PP_5043 0.79 +0.1
5,747,675 - PP_5043 0.79 -1.0
5,747,675 - PP_5043 0.79 -1.3
5,747,792 + PP_5043 0.87 +0.6
5,747,792 + PP_5043 0.87 -1.2
5,747,792 + PP_5043 0.87 +0.4
5,747,792 + PP_5043 0.87 -1.2
5,747,793 - PP_5043 0.87 -0.4
5,747,793 - PP_5043 0.87 -0.9
5,747,793 - PP_5043 0.87 -0.1
5,747,799 + PP_5043 0.88 -0.1
5,747,799 + PP_5043 0.88 +1.1
5,747,799 + PP_5043 0.88 +2.1
5,747,800 - PP_5043 0.88 -0.1
5,747,801 + PP_5043 0.88 -0.9
5,747,802 - PP_5043 0.88 -0.2
5,747,834 + +4.0
5,747,879 - +0.1
5,747,901 + +0.3
5,747,949 + +1.4
5,747,961 - -0.1
5,748,006 + -0.2
5,748,006 + -0.3
5,748,007 - +0.1
5,748,007 - -0.0
5,748,007 - +1.4
5,748,081 + -1.4
5,748,155 + +0.4
5,748,155 + +0.5
5,748,156 - +1.4
5,748,156 - -0.5
5,748,958 + PP_5044 0.44 +4.0
5,749,717 - PP_5044 0.86 +1.6
5,750,030 + +4.0
5,750,030 + +1.4
5,750,031 - +1.3
5,750,031 - -0.5
5,750,042 - -1.2
5,750,083 - +0.0
5,750,083 - +2.5
5,750,083 - +1.1
5,750,093 + +1.0
5,750,109 + +4.0
5,750,197 - +1.8
5,750,250 + +2.0
5,750,251 - +0.4
5,750,781 + PP_5045 0.46 +4.0
5,750,782 - +2.4
5,750,782 - PP_5045 0.46 -0.0
5,750,782 - PP_5045 0.46 -0.7
5,750,782 - PP_5045 0.46 +0.3
5,750,782 - PP_5045 0.46 +0.2
5,750,846 + PP_5045 0.51 +4.0
5,750,847 - PP_5045 0.51 -1.5
5,750,881 - PP_5045 0.53 +0.0
5,750,973 + PP_5045 0.59 +3.0
5,750,973 + PP_5045 0.59 +4.0

Or see this region's nucleotide sequence