Experiment: Valerolactone (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4893 and PP_4894 are separated by 12 nucleotides PP_4894 and PP_4895 are separated by 94 nucleotides
PP_4893: PP_4893 - GTPase HflX, at 5,562,945 to 5,564,246
_4893
PP_4894: PP_4894 - RNA-binding protein Hfq, at 5,564,259 to 5,564,519
_4894
PP_4895: PP_4895 - tRNA dimethylallyltransferase, at 5,564,614 to 5,565,585
_4895
Position (kb) 5564
5565 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 5563.297 kb on + strand, within PP_4893 at 5563.297 kb on + strand, within PP_4893 at 5563.298 kb on - strand, within PP_4893 at 5563.298 kb on - strand, within PP_4893 at 5563.298 kb on - strand, within PP_4893 at 5563.298 kb on - strand, within PP_4893 at 5563.298 kb on - strand, within PP_4893 at 5563.485 kb on + strand, within PP_4893 at 5563.486 kb on - strand, within PP_4893 at 5563.576 kb on + strand, within PP_4893 at 5563.576 kb on + strand, within PP_4893 at 5563.576 kb on + strand, within PP_4893 at 5563.577 kb on - strand, within PP_4893 at 5563.628 kb on + strand, within PP_4893 at 5563.628 kb on + strand, within PP_4893 at 5563.628 kb on + strand, within PP_4893 at 5563.629 kb on - strand, within PP_4893 at 5563.629 kb on - strand, within PP_4893 at 5563.629 kb on - strand, within PP_4893 at 5563.629 kb on - strand, within PP_4893 at 5563.629 kb on - strand, within PP_4893 at 5563.629 kb on - strand, within PP_4893 at 5563.630 kb on + strand, within PP_4893 at 5563.630 kb on + strand, within PP_4893 at 5563.630 kb on + strand, within PP_4893 at 5563.631 kb on - strand, within PP_4893 at 5563.731 kb on + strand, within PP_4893 at 5563.731 kb on + strand, within PP_4893 at 5563.731 kb on + strand, within PP_4893 at 5563.732 kb on - strand, within PP_4893 at 5563.733 kb on + strand, within PP_4893 at 5563.733 kb on + strand, within PP_4893 at 5563.734 kb on - strand, within PP_4893 at 5563.734 kb on - strand, within PP_4893 at 5563.734 kb on - strand, within PP_4893 at 5563.917 kb on - strand, within PP_4893 at 5564.019 kb on + strand, within PP_4893 at 5564.077 kb on + strand, within PP_4893 at 5564.078 kb on - strand, within PP_4893 at 5564.257 kb on + strand at 5564.799 kb on - strand, within PP_4895 at 5564.985 kb on - strand, within PP_4895 at 5565.080 kb on - strand, within PP_4895 at 5565.080 kb on - strand, within PP_4895 at 5565.080 kb on - strand, within PP_4895 at 5565.124 kb on - strand, within PP_4895 at 5565.266 kb on + strand, within PP_4895 at 5565.266 kb on + strand, within PP_4895 at 5565.266 kb on + strand, within PP_4895 at 5565.267 kb on - strand, within PP_4895 at 5565.267 kb on - strand, within PP_4895 at 5565.267 kb on - strand, within PP_4895 at 5565.267 kb on - strand, within PP_4895 at 5565.365 kb on + strand, within PP_4895 at 5565.365 kb on + strand, within PP_4895 at 5565.366 kb on - strand, within PP_4895
Per-strain Table
Position Strand Gene LocusTag Fraction Valerolactone (C) remove 5,563,297 + PP_4893 0.27 +3.3 5,563,297 + PP_4893 0.27 +1.6 5,563,298 - PP_4893 0.27 -0.8 5,563,298 - PP_4893 0.27 -0.1 5,563,298 - PP_4893 0.27 +1.8 5,563,298 - PP_4893 0.27 +0.8 5,563,298 - PP_4893 0.27 +0.5 5,563,485 + PP_4893 0.41 +3.9 5,563,486 - PP_4893 0.42 +0.2 5,563,576 + PP_4893 0.48 +0.8 5,563,576 + PP_4893 0.48 +0.7 5,563,576 + PP_4893 0.48 +2.3 5,563,577 - PP_4893 0.49 +0.5 5,563,628 + PP_4893 0.52 +1.9 5,563,628 + PP_4893 0.52 +0.4 5,563,628 + PP_4893 0.52 +1.4 5,563,629 - PP_4893 0.53 +1.8 5,563,629 - PP_4893 0.53 -0.3 5,563,629 - PP_4893 0.53 +1.3 5,563,629 - PP_4893 0.53 +0.7 5,563,629 - PP_4893 0.53 +1.9 5,563,629 - PP_4893 0.53 +2.8 5,563,630 + PP_4893 0.53 +4.5 5,563,630 + PP_4893 0.53 -0.1 5,563,630 + PP_4893 0.53 +0.9 5,563,631 - PP_4893 0.53 -0.5 5,563,731 + PP_4893 0.60 +1.6 5,563,731 + PP_4893 0.60 -0.2 5,563,731 + PP_4893 0.60 -0.4 5,563,732 - PP_4893 0.60 +1.4 5,563,733 + PP_4893 0.61 +1.6 5,563,733 + PP_4893 0.61 +0.6 5,563,734 - PP_4893 0.61 +1.6 5,563,734 - PP_4893 0.61 +0.5 5,563,734 - PP_4893 0.61 +0.1 5,563,917 - PP_4893 0.75 -0.3 5,564,019 + PP_4893 0.82 +0.1 5,564,077 + PP_4893 0.87 +2.4 5,564,078 - PP_4893 0.87 +1.3 5,564,257 + +1.4 5,564,799 - PP_4895 0.19 +1.4 5,564,985 - PP_4895 0.38 +1.6 5,565,080 - PP_4895 0.48 -0.3 5,565,080 - PP_4895 0.48 +1.4 5,565,080 - PP_4895 0.48 +3.9 5,565,124 - PP_4895 0.52 +2.4 5,565,266 + PP_4895 0.67 +1.4 5,565,266 + PP_4895 0.67 +1.4 5,565,266 + PP_4895 0.67 +3.9 5,565,267 - PP_4895 0.67 +1.6 5,565,267 - PP_4895 0.67 +1.4 5,565,267 - PP_4895 0.67 +1.4 5,565,267 - PP_4895 0.67 +0.5 5,565,365 + PP_4895 0.77 +1.2 5,565,365 + PP_4895 0.77 +1.5 5,565,366 - PP_4895 0.77 +1.4
Or see this region's nucleotide sequence