Experiment: Valerolactone (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3797 and PP_3798 overlap by 4 nucleotides PP_3798 and PP_3799 overlap by 4 nucleotides PP_3799 and PP_3800 overlap by 4 nucleotides PP_3800 and PP_3801 are separated by 16 nucleotides
PP_3797: PP_3797 - conserved membrane protein of unknown function, at 4,327,033 to 4,328,226
_3797
PP_3798: PP_3798 - conserved protein of unknown function, at 4,328,223 to 4,328,756
_3798
PP_3799: PP_3799 - conserved exported protein of unknown function, at 4,328,753 to 4,329,073
_3799
PP_3800: PP_3800 - conserved protein of unknown function, at 4,329,070 to 4,329,639
_3800
PP_3801: PP_3801 - putative Cation ABC transporter, periplasmic cation-binding protein, at 4,329,656 to 4,330,558
_3801
Position (kb) 4328
4329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4327.239 kb on - strand, within PP_3797 at 4327.361 kb on - strand, within PP_3797 at 4327.364 kb on + strand, within PP_3797 at 4327.365 kb on - strand, within PP_3797 at 4327.365 kb on - strand, within PP_3797 at 4327.365 kb on - strand, within PP_3797 at 4327.365 kb on - strand, within PP_3797 at 4327.491 kb on - strand, within PP_3797 at 4327.543 kb on + strand, within PP_3797 at 4327.543 kb on + strand, within PP_3797 at 4327.543 kb on + strand, within PP_3797 at 4327.882 kb on + strand, within PP_3797 at 4327.882 kb on + strand, within PP_3797 at 4327.882 kb on + strand, within PP_3797 at 4327.916 kb on - strand, within PP_3797 at 4327.951 kb on + strand, within PP_3797 at 4327.952 kb on - strand, within PP_3797 at 4328.328 kb on + strand, within PP_3798 at 4328.328 kb on + strand, within PP_3798 at 4328.328 kb on + strand, within PP_3798 at 4328.329 kb on - strand, within PP_3798 at 4328.406 kb on + strand, within PP_3798 at 4328.406 kb on + strand, within PP_3798 at 4328.467 kb on - strand, within PP_3798 at 4328.679 kb on + strand, within PP_3798 at 4328.680 kb on - strand, within PP_3798 at 4328.680 kb on - strand, within PP_3798 at 4328.766 kb on + strand at 4328.766 kb on + strand at 4328.766 kb on + strand at 4328.793 kb on + strand, within PP_3799 at 4328.793 kb on + strand, within PP_3799 at 4329.005 kb on + strand, within PP_3799 at 4329.005 kb on + strand, within PP_3799 at 4329.005 kb on + strand, within PP_3799 at 4329.006 kb on - strand, within PP_3799 at 4329.006 kb on - strand, within PP_3799 at 4329.006 kb on - strand, within PP_3799 at 4329.050 kb on + strand at 4329.051 kb on - strand at 4329.121 kb on + strand at 4329.121 kb on + strand at 4329.121 kb on + strand at 4329.121 kb on + strand at 4329.153 kb on - strand, within PP_3800 at 4329.153 kb on - strand, within PP_3800 at 4329.153 kb on - strand, within PP_3800 at 4329.262 kb on + strand, within PP_3800 at 4329.263 kb on - strand, within PP_3800 at 4329.263 kb on - strand, within PP_3800 at 4329.263 kb on - strand, within PP_3800 at 4329.300 kb on - strand, within PP_3800 at 4329.332 kb on + strand, within PP_3800 at 4329.333 kb on - strand, within PP_3800 at 4329.604 kb on + strand at 4329.719 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valerolactone (C) remove 4,327,239 - PP_3797 0.17 -1.3 4,327,361 - PP_3797 0.27 -1.6 4,327,364 + PP_3797 0.28 +0.8 4,327,365 - PP_3797 0.28 +1.0 4,327,365 - PP_3797 0.28 +0.5 4,327,365 - PP_3797 0.28 -0.1 4,327,365 - PP_3797 0.28 +0.7 4,327,491 - PP_3797 0.38 -0.7 4,327,543 + PP_3797 0.43 +0.1 4,327,543 + PP_3797 0.43 -2.3 4,327,543 + PP_3797 0.43 +1.4 4,327,882 + PP_3797 0.71 -2.9 4,327,882 + PP_3797 0.71 -0.6 4,327,882 + PP_3797 0.71 +0.0 4,327,916 - PP_3797 0.74 +0.8 4,327,951 + PP_3797 0.77 +0.1 4,327,952 - PP_3797 0.77 -0.2 4,328,328 + PP_3798 0.20 +2.7 4,328,328 + PP_3798 0.20 -1.0 4,328,328 + PP_3798 0.20 -0.7 4,328,329 - PP_3798 0.20 +0.9 4,328,406 + PP_3798 0.34 +0.4 4,328,406 + PP_3798 0.34 -1.6 4,328,467 - PP_3798 0.46 +0.9 4,328,679 + PP_3798 0.85 -0.3 4,328,680 - PP_3798 0.86 -0.4 4,328,680 - PP_3798 0.86 +0.1 4,328,766 + -0.7 4,328,766 + +0.7 4,328,766 + +1.2 4,328,793 + PP_3799 0.12 +0.0 4,328,793 + PP_3799 0.12 +0.5 4,329,005 + PP_3799 0.79 -0.4 4,329,005 + PP_3799 0.79 -1.4 4,329,005 + PP_3799 0.79 +2.3 4,329,006 - PP_3799 0.79 +1.1 4,329,006 - PP_3799 0.79 -0.2 4,329,006 - PP_3799 0.79 -2.9 4,329,050 + +0.2 4,329,051 - -0.0 4,329,121 + -2.5 4,329,121 + -0.2 4,329,121 + +0.1 4,329,121 + +2.4 4,329,153 - PP_3800 0.15 +0.1 4,329,153 - PP_3800 0.15 +0.6 4,329,153 - PP_3800 0.15 -1.1 4,329,262 + PP_3800 0.34 +0.5 4,329,263 - PP_3800 0.34 +0.3 4,329,263 - PP_3800 0.34 +0.1 4,329,263 - PP_3800 0.34 -1.4 4,329,300 - PP_3800 0.40 -0.5 4,329,332 + PP_3800 0.46 +0.6 4,329,333 - PP_3800 0.46 -0.9 4,329,604 + -0.5 4,329,719 - -1.4
Or see this region's nucleotide sequence