Strain Fitness in Pseudomonas putida KT2440 around PP_0857

Experiment: Valerolactone (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0856 and PP_0857 are separated by 116 nucleotidesPP_0857 and PP_0858 are separated by 151 nucleotides PP_0856: PP_0856 - conserved lipoprotein of unknown function, at 990,120 to 991,262 _0856 PP_0857: PP_0857 - GTPase Der, at 991,379 to 992,842 _0857 PP_0858: PP_0858 - putative methionine/glutamine aminotransferase, at 992,994 to 994,142 _0858 Position (kb) 991 992 993Strain fitness (log2 ratio) -2 -1 0 1 2 3at 990.431 kb on - strand, within PP_0856at 990.435 kb on + strand, within PP_0856at 990.728 kb on - strand, within PP_0856at 990.855 kb on + strand, within PP_0856at 990.855 kb on + strand, within PP_0856at 990.936 kb on + strand, within PP_0856at 990.969 kb on + strand, within PP_0856at 991.086 kb on + strand, within PP_0856at 991.150 kb on + strandat 991.266 kb on + strandat 991.266 kb on + strandat 991.266 kb on + strandat 992.908 kb on + strandat 992.973 kb on + strandat 992.973 kb on + strandat 992.973 kb on + strandat 992.973 kb on + strandat 992.973 kb on + strandat 992.973 kb on + strandat 992.974 kb on - strandat 992.974 kb on - strandat 992.974 kb on - strandat 993.163 kb on - strand, within PP_0858at 993.225 kb on + strand, within PP_0858at 993.225 kb on + strand, within PP_0858at 993.226 kb on - strand, within PP_0858at 993.226 kb on - strand, within PP_0858at 993.226 kb on - strand, within PP_0858at 993.226 kb on - strand, within PP_0858at 993.260 kb on + strand, within PP_0858at 993.260 kb on + strand, within PP_0858at 993.261 kb on - strand, within PP_0858at 993.284 kb on + strand, within PP_0858at 993.285 kb on - strand, within PP_0858at 993.357 kb on + strand, within PP_0858at 993.358 kb on - strand, within PP_0858at 993.395 kb on - strand, within PP_0858at 993.395 kb on - strand, within PP_0858at 993.549 kb on - strand, within PP_0858at 993.549 kb on - strand, within PP_0858at 993.563 kb on + strand, within PP_0858at 993.567 kb on + strand, within PP_0858at 993.567 kb on + strand, within PP_0858at 993.568 kb on - strand, within PP_0858at 993.568 kb on - strand, within PP_0858at 993.588 kb on + strand, within PP_0858at 993.588 kb on + strand, within PP_0858at 993.589 kb on - strand, within PP_0858at 993.589 kb on - strand, within PP_0858at 993.603 kb on + strand, within PP_0858at 993.603 kb on + strand, within PP_0858at 993.614 kb on - strand, within PP_0858at 993.649 kb on - strand, within PP_0858at 993.649 kb on - strand, within PP_0858at 993.649 kb on - strand, within PP_0858at 993.649 kb on - strand, within PP_0858at 993.649 kb on - strand, within PP_0858at 993.687 kb on + strand, within PP_0858at 993.687 kb on + strand, within PP_0858at 993.688 kb on - strand, within PP_0858at 993.765 kb on + strand, within PP_0858at 993.766 kb on - strand, within PP_0858at 993.766 kb on - strand, within PP_0858at 993.836 kb on + strand, within PP_0858at 993.836 kb on + strand, within PP_0858at 993.837 kb on - strand, within PP_0858at 993.837 kb on - strand, within PP_0858

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Valerolactone (C)
remove
990,431 - PP_0856 0.27 +2.9
990,435 + PP_0856 0.28 +2.9
990,728 - PP_0856 0.53 +1.9
990,855 + PP_0856 0.64 +2.9
990,855 + PP_0856 0.64 +0.7
990,936 + PP_0856 0.71 +1.3
990,969 + PP_0856 0.74 +0.0
991,086 + PP_0856 0.85 +0.9
991,150 + -0.1
991,266 + -0.5
991,266 + -0.2
991,266 + +0.3
992,908 + +0.0
992,973 + +0.9
992,973 + -1.2
992,973 + +0.4
992,973 + -0.4
992,973 + -0.8
992,973 + -1.0
992,974 - +0.5
992,974 - +1.9
992,974 - -0.8
993,163 - PP_0858 0.15 +2.3
993,225 + PP_0858 0.20 +0.8
993,225 + PP_0858 0.20 +0.1
993,226 - PP_0858 0.20 +1.7
993,226 - PP_0858 0.20 +0.6
993,226 - PP_0858 0.20 +1.3
993,226 - PP_0858 0.20 -0.7
993,260 + PP_0858 0.23 -0.2
993,260 + PP_0858 0.23 +0.0
993,261 - PP_0858 0.23 +0.5
993,284 + PP_0858 0.25 -1.5
993,285 - PP_0858 0.25 +0.6
993,357 + PP_0858 0.32 -0.2
993,358 - PP_0858 0.32 -1.1
993,395 - PP_0858 0.35 -0.1
993,395 - PP_0858 0.35 +1.9
993,549 - PP_0858 0.48 -0.4
993,549 - PP_0858 0.48 -0.1
993,563 + PP_0858 0.50 +0.5
993,567 + PP_0858 0.50 -0.1
993,567 + PP_0858 0.50 +0.5
993,568 - PP_0858 0.50 -0.1
993,568 - PP_0858 0.50 +0.9
993,588 + PP_0858 0.52 +1.0
993,588 + PP_0858 0.52 -1.1
993,589 - PP_0858 0.52 -0.1
993,589 - PP_0858 0.52 +3.0
993,603 + PP_0858 0.53 +0.6
993,603 + PP_0858 0.53 -1.8
993,614 - PP_0858 0.54 -0.1
993,649 - PP_0858 0.57 -0.8
993,649 - PP_0858 0.57 +1.3
993,649 - PP_0858 0.57 +0.3
993,649 - PP_0858 0.57 +0.8
993,649 - PP_0858 0.57 -0.3
993,687 + PP_0858 0.60 -0.2
993,687 + PP_0858 0.60 -0.7
993,688 - PP_0858 0.60 -0.5
993,765 + PP_0858 0.67 +1.3
993,766 - PP_0858 0.67 +3.1
993,766 - PP_0858 0.67 +1.9
993,836 + PP_0858 0.73 -2.1
993,836 + PP_0858 0.73 -1.0
993,837 - PP_0858 0.73 -0.8
993,837 - PP_0858 0.73 +1.9

Or see this region's nucleotide sequence