Strain Fitness in Pseudomonas putida KT2440 around PP_1931

Experiment: 2,6-diaminopimelic (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2,6-diaminopimelic (N)
2,176,817	+		PP_1930	0.63	-0.9
2,176,817	+		PP_1930	0.63	-0.3
2,176,895	+		PP_1930	0.83	-0.5
2,176,999	-				+0.6
2,177,008	-				+0.2
2,177,011	+				-0.9
2,177,040	-				+1.1
2,177,070	+				+0.4
2,177,070	+				+0.7
2,177,070	+				+1.4
2,177,070	+				-1.7
2,177,071	-				-2.1
2,177,071	-				-1.1
2,177,071	-				-0.4
2,177,071	-				+1.3
2,177,071	-				-2.2
2,177,071	-				-0.2
2,177,072	+				+0.8
2,177,072	+				+2.4
2,177,072	+				+0.3
2,177,073	-				-0.4
2,177,073	-				-1.1
2,177,073	-				-1.4
2,177,086	-				+0.1
2,177,119	+				+1.1
2,177,119	+				+0.8
2,177,120	-				-0.5
2,177,120	-				-1.8
2,177,160	+		PP_5485	0.11	+1.8
2,177,160	+		PP_5485	0.11	+0.1
2,177,161	-		PP_5485	0.11	+1.1
2,177,225	+		PP_5485	0.24	-0.3
2,177,225	+		PP_5485	0.24	-1.1
2,177,225	+		PP_5485	0.24	-0.2
2,177,226	-		PP_5485	0.24	-1.5
2,177,226	-		PP_5485	0.24	-0.7
2,177,226	-		PP_5485	0.24	-1.1
2,177,226	-		PP_5485	0.24	-1.2
2,177,314	-		PP_5485	0.42	-0.3
2,177,445	-		PP_5485	0.69	-1.2
2,177,529	-		PP_5485	0.86	-2.1
2,177,574	+				-1.8
2,177,574	+				-0.6
2,177,574	+				-0.5
2,177,574	+				+0.5
2,177,575	-				-0.4
2,177,674	+				-1.9
2,177,675	-				-0.5
2,177,803	+				-1.0
2,177,803	+				-1.1
2,177,803	+				+0.6
2,177,803	+				+0.5
2,177,804	-				-1.5
2,177,804	-				+1.8
2,177,804	-				-0.3
2,177,804	-				+2.2
2,177,804	-				-2.3
2,177,804	-				+0.6
2,177,832	-				+1.0
2,177,942	+				+0.8
2,177,969	+		PP_1931	0.14	-0.3
2,177,970	-		PP_1931	0.14	+1.1
2,177,970	-		PP_1931	0.14	+0.4
2,177,970	-		PP_1931	0.14	-0.7
2,177,970	-		PP_1931	0.14	+1.1
2,177,975	+		PP_1931	0.15	-0.3
2,177,975	+		PP_1931	0.15	+0.6
2,177,975	+		PP_1931	0.15	+3.4
2,177,975	+		PP_1931	0.15	+1.5
2,177,976	-		PP_1931	0.15	-0.8
2,177,976	-		PP_1931	0.15	+0.3
2,177,981	+		PP_1931	0.15	+1.5
2,177,985	+		PP_1931	0.15	+0.6
2,178,109	+		PP_1931	0.24	+0.8
2,178,121	+		PP_1931	0.25	-2.3
2,178,122	-				+3.4
2,178,229	+		PP_1931	0.32	-2.0
2,178,229	+		PP_1931	0.32	-0.5
2,178,230	-		PP_1931	0.32	-0.8
2,178,230	-		PP_1931	0.32	+1.6
2,178,290	+		PP_1931	0.37	+0.4
2,178,290	+		PP_1931	0.37	+0.5
2,178,291	-		PP_1931	0.37	+0.2
2,178,406	+		PP_1931	0.45	-0.6
2,178,420	+		PP_1931	0.46	+1.8
2,178,420	+		PP_1931	0.46	+0.5
2,178,421	-		PP_1931	0.46	+0.7
2,178,421	-		PP_1931	0.46	-0.3
2,178,509	+		PP_1931	0.52	-2.2
2,178,509	+		PP_1931	0.52	+0.7
2,178,511	+		PP_1931	0.52	-0.9
2,178,511	+		PP_1931	0.52	+3.1
2,178,512	-		PP_1931	0.52	-0.5
2,178,512	-		PP_1931	0.52	+1.2
2,178,516	+		PP_1931	0.52	+1.7
2,178,516	+		PP_1931	0.52	+1.7
2,178,517	-		PP_1931	0.52	+0.5
2,178,517	-		PP_1931	0.52	-0.1
2,178,517	-		PP_1931	0.52	-0.1
2,178,517	-		PP_1931	0.52	-2.2
2,178,517	-		PP_1931	0.52	+1.5
2,178,666	-		PP_1931	0.63	-2.0
2,178,668	+		PP_1931	0.63	+1.2
2,178,669	-		PP_1931	0.63	-0.1
2,178,669	-		PP_1931	0.63	+0.4
2,178,669	-		PP_1931	0.63	+1.4
2,178,669	-		PP_1931	0.63	-2.2
2,178,669	-		PP_1931	0.63	+0.1
2,178,739	+		PP_1931	0.68	-0.2
2,178,739	+		PP_1931	0.68	-1.4
2,178,739	+				+1.8
2,178,739	+		PP_1931	0.68	-1.4
2,178,740	-		PP_1931	0.68	+2.5
2,178,782	+		PP_1931	0.71	+0.1
2,178,782	+		PP_1931	0.71	-0.4
2,178,804	-				+3.4
2,178,840	-		PP_1931	0.75	-1.3
2,178,840	-		PP_1931	0.75	-0.2
2,178,875	+		PP_1931	0.77	-0.1
2,178,876	-		PP_1931	0.77	+1.1
2,178,876	-		PP_1931	0.77	+3.4
2,178,876	-		PP_1931	0.77	-2.0
2,178,919	+		PP_1931	0.80	-0.3
2,178,920	-		PP_1931	0.80	-0.8
2,179,105	+				+1.1
2,179,105	+				-0.0
2,179,136	+				+1.2
2,179,136	+				+0.2
2,179,136	+				-0.1
2,179,137	-				-1.1
2,179,210	-				+1.5
2,179,210	-				+3.1
2,179,291	+				+1.9
2,179,329	+				-2.0
2,179,329	+				+1.8
2,179,329	+				+0.7
2,179,329	+				+1.4
2,179,330	-				+2.2
2,179,330	-				+1.0
2,179,330	-				-0.8
2,179,330	-				-0.3
2,179,414	-				+1.2
2,179,443	-				+0.5
2,179,457	+				+1.3
2,179,458	-				+0.5
2,179,511	-		PP_5486	0.21	+0.6
2,179,592	+		PP_5486	0.62	+2.5
2,179,653	-				-0.7
2,179,673	+				+0.9
2,179,701	-				-1.3
2,179,701	-				+3.1
2,179,701	-				-0.8
2,179,701	-				+0.2
2,179,704	-				-2.1
2,179,704	-				-0.4
2,179,704	-				-0.3
2,179,704	-				-0.8
2,179,704	-				-1.8
2,179,704	-				-0.1
2,179,718	+				-1.5
2,179,718	+				-0.8
2,179,718	+				-0.1
2,179,718	+				-0.2
2,179,718	+				-1.2
2,179,719	-				-0.6
2,179,719	-				-0.2
2,179,719	-				-0.3
2,179,740	+				-1.1
2,179,772	+				-1.7
2,179,773	-				+0.0
2,179,808	-				-1.2
2,179,808	-				+3.4
2,179,808	-				-1.3
2,179,851	-				-0.4
2,179,912	+		PP_1932	0.14	-0.4
2,179,912	+		PP_1932	0.14	-1.7
2,179,912	+				+1.4
2,179,926	+		PP_1932	0.16	-0.5
2,179,927	-		PP_1932	0.16	-2.5
2,179,927	-		PP_1932	0.16	+0.5
2,179,955	-		PP_1932	0.20	+0.5
2,180,084	-		PP_1932	0.37	-1.3
2,180,111	+		PP_1932	0.41	+0.3
2,180,130	+		PP_1932	0.43	-1.1
2,180,131	-		PP_1932	0.43	-1.6
2,180,155	-		PP_1932	0.47	+0.7
2,180,161	+		PP_1932	0.47	-2.1
2,180,162	-		PP_1932	0.47	-2.2
2,180,162	-		PP_1932	0.47	+1.0
2,180,162	-		PP_1932	0.47	-1.6