Experiment: 2,6-diaminopimelic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0700 and PP_0701 are separated by 130 nucleotides PP_0701 and PP_0702 are separated by 324 nucleotides
PP_0700: PP_0700 - putative Transmembrane sensor, at 813,396 to 814,382
_0700
PP_0701: PP_0701 - fosmidomycin efflux system, at 814,513 to 815,727
_0701
PP_0702: PP_0702 - Major facilitator family transporter, at 816,052 to 817,209
_0702
Position (kb) 814
815
816 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 813.650 kb on + strand, within PP_0700 at 813.651 kb on - strand, within PP_0700 at 813.651 kb on - strand, within PP_0700 at 813.783 kb on + strand, within PP_0700 at 813.784 kb on - strand, within PP_0700 at 813.802 kb on + strand, within PP_0700 at 813.803 kb on - strand, within PP_0700 at 813.803 kb on - strand, within PP_0700 at 813.804 kb on + strand, within PP_0700 at 813.805 kb on - strand, within PP_0700 at 813.805 kb on - strand, within PP_0700 at 813.972 kb on + strand, within PP_0700 at 813.972 kb on + strand, within PP_0700 at 813.972 kb on + strand, within PP_0700 at 813.973 kb on - strand, within PP_0700 at 814.037 kb on - strand, within PP_0700 at 814.037 kb on - strand, within PP_0700 at 814.042 kb on + strand, within PP_0700 at 814.043 kb on - strand, within PP_0700 at 814.043 kb on - strand, within PP_0700 at 814.180 kb on + strand, within PP_0700 at 814.200 kb on + strand, within PP_0700 at 814.200 kb on + strand, within PP_0700 at 814.201 kb on - strand, within PP_0700 at 814.201 kb on - strand, within PP_0700 at 814.453 kb on + strand at 814.453 kb on + strand at 814.453 kb on + strand at 814.453 kb on + strand at 814.453 kb on + strand at 814.453 kb on + strand at 814.453 kb on + strand at 814.453 kb on + strand at 814.453 kb on + strand at 814.453 kb on + strand at 814.453 kb on + strand at 814.453 kb on + strand at 814.453 kb on + strand at 814.454 kb on - strand at 814.454 kb on - strand at 814.454 kb on - strand at 814.454 kb on - strand at 814.454 kb on - strand at 814.454 kb on - strand at 814.454 kb on - strand at 814.454 kb on - strand at 814.454 kb on - strand at 814.457 kb on + strand at 814.457 kb on + strand at 814.458 kb on - strand at 814.458 kb on - strand at 814.458 kb on - strand at 814.461 kb on + strand at 814.462 kb on - strand at 814.524 kb on + strand at 814.584 kb on + strand at 814.584 kb on + strand at 814.584 kb on + strand at 814.584 kb on + strand at 814.585 kb on - strand at 814.672 kb on + strand, within PP_0701 at 814.672 kb on + strand, within PP_0701 at 814.673 kb on - strand, within PP_0701 at 814.806 kb on + strand, within PP_0701 at 814.806 kb on + strand, within PP_0701 at 814.807 kb on - strand, within PP_0701 at 814.807 kb on - strand, within PP_0701 at 814.807 kb on - strand, within PP_0701 at 814.807 kb on - strand, within PP_0701 at 814.917 kb on + strand, within PP_0701 at 815.027 kb on + strand, within PP_0701 at 815.111 kb on - strand, within PP_0701 at 815.227 kb on + strand, within PP_0701 at 815.227 kb on + strand at 815.227 kb on + strand, within PP_0701 at 815.227 kb on + strand, within PP_0701 at 815.227 kb on + strand at 815.228 kb on - strand, within PP_0701 at 815.228 kb on - strand, within PP_0701 at 815.228 kb on - strand, within PP_0701 at 815.228 kb on - strand, within PP_0701 at 815.233 kb on + strand, within PP_0701 at 815.233 kb on + strand, within PP_0701 at 815.233 kb on + strand, within PP_0701 at 815.234 kb on - strand, within PP_0701 at 815.234 kb on - strand, within PP_0701 at 815.255 kb on - strand, within PP_0701 at 815.259 kb on + strand, within PP_0701 at 815.259 kb on + strand, within PP_0701 at 815.260 kb on - strand, within PP_0701 at 815.266 kb on + strand, within PP_0701 at 815.267 kb on - strand, within PP_0701 at 815.491 kb on - strand, within PP_0701 at 815.524 kb on + strand, within PP_0701 at 815.524 kb on + strand, within PP_0701 at 815.525 kb on - strand, within PP_0701 at 815.525 kb on - strand, within PP_0701 at 815.624 kb on - strand at 815.644 kb on - strand at 815.650 kb on + strand at 815.650 kb on + strand at 815.650 kb on + strand at 815.651 kb on - strand at 815.651 kb on - strand at 815.651 kb on - strand at 815.651 kb on - strand at 815.656 kb on + strand at 815.657 kb on - strand at 815.657 kb on - strand at 815.657 kb on - strand at 815.712 kb on + strand at 815.712 kb on + strand at 815.712 kb on + strand at 815.712 kb on + strand at 815.719 kb on - strand at 815.817 kb on + strand at 815.817 kb on + strand at 815.818 kb on - strand at 815.821 kb on - strand at 815.821 kb on - strand at 816.049 kb on + strand at 816.049 kb on + strand at 816.049 kb on + strand at 816.049 kb on + strand at 816.050 kb on - strand at 816.050 kb on - strand at 816.050 kb on - strand at 816.050 kb on - strand at 816.050 kb on - strand at 816.078 kb on - strand at 816.265 kb on + strand, within PP_0702 at 816.265 kb on + strand, within PP_0702 at 816.265 kb on + strand, within PP_0702 at 816.265 kb on + strand, within PP_0702 at 816.265 kb on + strand, within PP_0702 at 816.266 kb on - strand, within PP_0702 at 816.266 kb on - strand, within PP_0702 at 816.266 kb on - strand, within PP_0702 at 816.266 kb on - strand, within PP_0702 at 816.266 kb on - strand, within PP_0702 at 816.266 kb on - strand, within PP_0702 at 816.266 kb on - strand, within PP_0702 at 816.451 kb on + strand, within PP_0702 at 816.452 kb on - strand, within PP_0702 at 816.452 kb on - strand, within PP_0702 at 816.452 kb on - strand, within PP_0702 at 816.724 kb on + strand, within PP_0702
Per-strain Table
Position Strand Gene LocusTag Fraction 2,6-diaminopimelic (N) remove 813,650 + PP_0700 0.26 +0.8 813,651 - PP_0700 0.26 +1.0 813,651 - PP_0700 0.26 -0.2 813,783 + PP_0700 0.39 -1.5 813,784 - PP_0700 0.39 +0.3 813,802 + PP_0700 0.41 +1.6 813,803 - PP_0700 0.41 -0.9 813,803 - PP_0700 0.41 +2.6 813,804 + PP_0700 0.41 -1.3 813,805 - PP_0700 0.41 -1.7 813,805 - PP_0700 0.41 +2.7 813,972 + PP_0700 0.58 +1.2 813,972 + PP_0700 0.58 -1.2 813,972 + PP_0700 0.58 +0.7 813,973 - PP_0700 0.58 -0.9 814,037 - PP_0700 0.65 +1.0 814,037 - PP_0700 0.65 -1.6 814,042 + PP_0700 0.65 -0.9 814,043 - PP_0700 0.66 -1.2 814,043 - PP_0700 0.66 +2.4 814,180 + PP_0700 0.79 -1.6 814,200 + PP_0700 0.81 -0.6 814,200 + PP_0700 0.81 +3.7 814,201 - PP_0700 0.82 +4.7 814,201 - PP_0700 0.82 +0.8 814,453 + +0.1 814,453 + +0.5 814,453 + -1.6 814,453 + -0.8 814,453 + -1.2 814,453 + -0.3 814,453 + -1.3 814,453 + -0.1 814,453 + -0.0 814,453 + -0.8 814,453 + -1.2 814,453 + -0.3 814,453 + -0.6 814,454 - -1.8 814,454 - -0.4 814,454 - -1.3 814,454 - +0.3 814,454 - -0.6 814,454 - -0.8 814,454 - -0.1 814,454 - +0.7 814,454 - +0.5 814,457 + +2.0 814,457 + -2.0 814,458 - -0.6 814,458 - -1.0 814,458 - -0.1 814,461 + -0.5 814,462 - +0.8 814,524 + +3.7 814,584 + -2.2 814,584 + -0.6 814,584 + -0.3 814,584 + -0.2 814,585 - -1.0 814,672 + PP_0701 0.13 -0.1 814,672 + PP_0701 0.13 -0.8 814,673 - PP_0701 0.13 -1.2 814,806 + PP_0701 0.24 +0.2 814,806 + PP_0701 0.24 -0.6 814,807 - PP_0701 0.24 +1.2 814,807 - PP_0701 0.24 -0.6 814,807 - PP_0701 0.24 -0.0 814,807 - PP_0701 0.24 -0.7 814,917 + PP_0701 0.33 +0.8 815,027 + PP_0701 0.42 +0.1 815,111 - PP_0701 0.49 +0.9 815,227 + PP_0701 0.59 +2.8 815,227 + +2.1 815,227 + PP_0701 0.59 -1.6 815,227 + PP_0701 0.59 -0.2 815,227 + +4.7 815,228 - PP_0701 0.59 -3.0 815,228 - PP_0701 0.59 -0.6 815,228 - PP_0701 0.59 +0.1 815,228 - PP_0701 0.59 -0.2 815,233 + PP_0701 0.59 -0.0 815,233 + PP_0701 0.59 +1.0 815,233 + PP_0701 0.59 -0.6 815,234 - PP_0701 0.59 -0.8 815,234 - PP_0701 0.59 +0.1 815,255 - PP_0701 0.61 +3.9 815,259 + PP_0701 0.61 +1.1 815,259 + PP_0701 0.61 +1.6 815,260 - PP_0701 0.61 -1.0 815,266 + PP_0701 0.62 -2.4 815,267 - PP_0701 0.62 +1.1 815,491 - PP_0701 0.80 +1.2 815,524 + PP_0701 0.83 -0.4 815,524 + PP_0701 0.83 +0.4 815,525 - PP_0701 0.83 -1.1 815,525 - PP_0701 0.83 +0.1 815,624 - +1.6 815,644 - +1.7 815,650 + -0.0 815,650 + +1.4 815,650 + -1.0 815,651 - -0.3 815,651 - -0.2 815,651 - -1.6 815,651 - -0.1 815,656 + +0.4 815,657 - +1.5 815,657 - +1.4 815,657 - +0.3 815,712 + -0.1 815,712 + -0.0 815,712 + +1.1 815,712 + +0.2 815,719 - +0.2 815,817 + +2.0 815,817 + -2.4 815,818 - -0.5 815,821 - -0.7 815,821 - +1.8 816,049 + -2.0 816,049 + -0.8 816,049 + -0.8 816,049 + -3.2 816,050 - +0.3 816,050 - -0.6 816,050 - -0.2 816,050 - +0.9 816,050 - -0.8 816,078 - +1.4 816,265 + PP_0702 0.18 -1.6 816,265 + PP_0702 0.18 -0.6 816,265 + PP_0702 0.18 -1.1 816,265 + PP_0702 0.18 +3.7 816,265 + PP_0702 0.18 +1.2 816,266 - PP_0702 0.18 -1.2 816,266 - PP_0702 0.18 +1.6 816,266 - PP_0702 0.18 -2.0 816,266 - PP_0702 0.18 +0.6 816,266 - PP_0702 0.18 +1.0 816,266 - PP_0702 0.18 -0.8 816,266 - PP_0702 0.18 -0.3 816,451 + PP_0702 0.34 +0.5 816,452 - PP_0702 0.35 +0.7 816,452 - PP_0702 0.35 -0.4 816,452 - PP_0702 0.35 +1.7 816,724 + PP_0702 0.58 -0.7
Or see this region's nucleotide sequence